mRNA_E-siliculosus-1a_F_contig1034.273.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1034.273.1 vs. uniprot
Match: D7FS68_ECTSI (RNA-splicing ligase RtcB homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS68_ECTSI) HSP 1 Score: 987 bits (2551), Expect = 0.000e+0 Identity = 499/506 (98.62%), Postives = 503/506 (99.41%), Query Frame = 2 Query: 29 MKRSYEEEKSFITREDGQRFRIDPGFVPNMKVPGYFYANARLEKLTFEELRQQSGGKGGGGFLPAVKQIANVAALPGVVKGSIGLPDVHSGYGFAVGNVAAFDMADPDAVVSPAGGVGFDINCGVRLVRTNLTLEDVLPVKEELTQSLFDHIPVGVGTKGVVPITAADLNDVLEMGIDWSIREGYAWVEDKEHCEEYGRMLQADPTKASRRAKIRGLPQLGTLGAGNHYAEIQVVEEVYDEQAAKKMGIDKVNQVCIMIHSGSRGLGHQVATDALVLMEAAMARDNIDINDRQLACAKISSQEGQDYLAGMAAAANYAWVNRAMMTFLTRRAFSKKFGKTAEELDMHVVYDVSHNIAKVEQHIVDGDLKTLLVHRKGATRAFPPHHPLIPVDYQFTGQPVIVGGTMGTCSYVLTGTQKGMDETFGSTCHGAGRAKSRNESRKTLDYEAVLGGLEKKGISIRVASPKLVMEEAPESYKDVTEVVNTCHDAGVSMRAVKLRPIAVIKG 1546 MKRSYEEEKSFITRE+GQRFRIDPGFVPNMKVPGYFYAN RLEKLTFEELRQQSGGKGGGGFLPAVKQIANVAALPGVVKGSIGLPDVHSGYGFAVGNVAAFDMADPDAVVSP GGVGFDINCGVRLVRTNLTL+DVLPVKEELTQSLFDHIPVGVGTKG+VPITAADLNDVLEMGIDWSIREGYAWVEDKEHCEEYGRMLQADPTKA RRAKIRGLPQLGTLGAGNHYAEIQVVEEVYDEQAAKKMGIDKVNQVCIMIHSGSRGLGHQVATDALVLMEAAMARDNIDINDRQLACAKI+SQEGQDYLAGMAAAANYAWVNRAMMTFLTRRAFSKKFGKTAEELDMHVVYDVSHNIAKVEQHIVDGDLKTLLVHRKGATRAFPPHHPLIPVDYQFTGQPVIVGGTMGTCSYVLTGTQKGMDETFGSTCHGAGRAKSRNESRKTLDYEAVLGGLEKKGISIRVASPKLVMEEAPESYKDVTEVVNTCHDAGVSMRAVKLRPIAVIKG Sbjct: 1 MKRSYEEEKSFITRENGQRFRIDPGFVPNMKVPGYFYANDRLEKLTFEELRQQSGGKGGGGFLPAVKQIANVAALPGVVKGSIGLPDVHSGYGFAVGNVAAFDMADPDAVVSP-GGVGFDINCGVRLVRTNLTLDDVLPVKEELTQSLFDHIPVGVGTKGMVPITAADLNDVLEMGIDWSIREGYAWVEDKEHCEEYGRMLQADPTKA-RRAKIRGLPQLGTLGAGNHYAEIQVVEEVYDEQAAKKMGIDKVNQVCIMIHSGSRGLGHQVATDALVLMEAAMARDNIDINDRQLACAKINSQEGQDYLAGMAAAANYAWVNRAMMTFLTRRAFSKKFGKTAEELDMHVVYDVSHNIAKVEQHIVDGDLKTLLVHRKGATRAFPPHHPLIPVDYQFTGQPVIVGGTMGTCSYVLTGTQKGMDETFGSTCHGAGRAKSRNESRKTLDYEAVLGGLEKKGISIRVASPKLVMEEAPESYKDVTEVVNTCHDAGVSMRAVKLRPIAVIKG 504
BLAST of mRNA_E-siliculosus-1a_F_contig1034.273.1 vs. uniprot
Match: A0A7S1GE03_9STRA (RNA-splicing ligase RtcB homolog n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GE03_9STRA) HSP 1 Score: 792 bits (2046), Expect = 7.590e-285 Identity = 387/504 (76.79%), Postives = 442/504 (87.70%), Query Frame = 2 Query: 35 RSYEEEKSFITREDGQRFRIDPGFVPNMKVPGYFYANARLEKLTFEELRQQSGGKGGGGFLPAVKQIANVAALPGVVKGSIGLPDVHSGYGFAVGNVAAFDMADPDAVVSPAGGVGFDINCGVRLVRTNLTLEDVLPVKEELTQSLFDHIPVGVGTKGVVPITAADLNDVLEMGIDWSIREGYAWVEDKEHCEEYGRMLQADPTKASRRAKIRGLPQLGTLGAGNHYAEIQVVEEVYDEQAAKKMGIDKVNQVCIMIHSGSRGLGHQVATDALVLMEAAMARDNIDINDRQLACAKISSQEGQDYLAGMAAAANYAWVNRAMMTFLTRRAFSKKFGKTAEELDMHVVYDVSHNIAKVEQHIVDGDLKTLLVHRKGATRAFPPHHPLIPVDYQFTGQPVIVGGTMGTCSYVLTGTQKGMDETFGSTCHGAGRAKSRNESRKTLDYEAVLGGLEKKGISIRVASPKLVMEEAPESYKDVTEVVNTCHDAGVSMRAVKLRPIAVIKG 1546 R+YEEE +++ RE +RF +D GFVPNM+VPG FY N RLE L F+EL+Q S G GGFLPA+KQ+ANVAALPG+VK SI LPDVHSGYGFA+GNVAAFDM DP +VVSP GGVGFDINCGVRLVRTNLT D+LPVKE+LTQSLFDHIPVGVG+KG++P TA DL LEMG+DWS+REGYAW EDKEHCEEYGRML ADP+K S+RAK RGLPQLGTLGAGNHYAEIQ+V+E+YD AA +MGI++V QVC+MIHSGSRGLGHQVATDAL ME AM RD I++NDRQLACA+I+S EGQ+YL MAAAANYAWVNR+ MTFLTR+AF+K F T ++LDMHVVYDVSHNIAKVE+HIVDG L+ LLVHRKG+TRAFPPHHPLIPVDYQFTGQPV++GGTMGTCSYVLTGT+KGM ETFGSTCHGAGRA SR +SR+TLDY VL LE+KGISIRVASPKLVMEEAPESYKDVT VV+TCH AG+S + +KLRP+AV+KG Sbjct: 10 RTYEEECAYVKRETTERFGVDIGFVPNMRVPGVFYVNDRLESLMFDELKQFSTASGVGGFLPAMKQLANVAALPGIVKRSIALPDVHSGYGFAIGNVAAFDMNDPTSVVSP-GGVGFDINCGVRLVRTNLTEADLLPVKEKLTQSLFDHIPVGVGSKGIIPTTAKDLEAGLEMGMDWSLREGYAWAEDKEHCEEYGRMLAADPSKVSKRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDTHAAGRMGIEQVGQVCVMIHSGSRGLGHQVATDALNEMEKAMVRDRIEVNDRQLACARITSTEGQNYLKSMAAAANYAWVNRSSMTFLTRQAFAKMFNSTPDDLDMHVVYDVSHNIAKVEEHIVDGRLRKLLVHRKGSTRAFPPHHPLIPVDYQFTGQPVLIGGTMGTCSYVLTGTEKGMAETFGSTCHGAGRAHSRAKSRRTLDYHEVLRKLEEKGISIRVASPKLVMEEAPESYKDVTAVVDTCHAAGISKKVIKLRPVAVVKG 512
BLAST of mRNA_E-siliculosus-1a_F_contig1034.273.1 vs. uniprot
Match: A0A2I4D653_9TELE (RNA-splicing ligase RtcB homolog n=28 Tax=Gnathostomata TaxID=7776 RepID=A0A2I4D653_9TELE) HSP 1 Score: 783 bits (2023), Expect = 1.850e-281 Identity = 383/506 (75.69%), Postives = 435/506 (85.97%), Query Frame = 2 Query: 29 MKRSYEEEKSFITREDGQRFRIDPGFVPNMKVPGYFYANARLEKLTFEELRQQSGGKGGGGFLPAVKQIANVAALPGVVKGSIGLPDVHSGYGFAVGNVAAFDMADPDAVVSPAGGVGFDINCGVRLVRTNLTLEDVLPVKEELTQSLFDHIPVGVGTKGVVPITAADLNDVLEMGIDWSIREGYAWVEDKEHCEEYGRMLQADPTKASRRAKIRGLPQLGTLGAGNHYAEIQVVEEVYDEQAAKKMGIDKVNQVCIMIHSGSRGLGHQVATDALVLMEAAMARDNIDINDRQLACAKISSQEGQDYLAGMAAAANYAWVNRAMMTFLTRRAFSKKFGKTAEELDMHVVYDVSHNIAKVEQHIVDGDLKTLLVHRKGATRAFPPHHPLIPVDYQFTGQPVIVGGTMGTCSYVLTGTQKGMDETFGSTCHGAGRAKSRNESRKTLDYEAVLGGLEKKGISIRVASPKLVMEEAPESYKDVTEVVNTCHDAGVSMRAVKLRPIAVIKG 1546 M RSY +E F+ + + +RI GFVPNMKV G FY N LEKL FEELR G G GGFLPA+KQI NVAALPG+V SIGLPDVHSGYGFA+GN+AAFDM DPDAVVSP GGVGFDINCGVRL+RTNL DV PVKE+L QSLFDHIPVGVG+KGV+P+ A DL + LEMG+DWS+REGYAW EDKEHCEEYGRMLQADP K S +AK RGLPQLGTLGAGNHYAEIQVV+++YD+ AAKKMGID QVC+MIHSGSRGLGHQVATDALV ME AM RD I +NDRQLACA+I+SQEGQDYL GMAAA NYAWVNR+ MTFLTR+AFSK FG T ++LDMH++YDVSHNIAKVE+H+VDG +TLLVHRKG+TRAFPPHHPLIPVDYQ TGQPV++GGTMGTCSYVLTGT++GM ETFG+TCHGAGRA SR +SR+ LD++ VL L GI+IRVASPKLVMEEAPESYK+VT+VVNTCHDAG+S +A+KLRP+AVIKG Sbjct: 1 MSRSYNDELQFLEKLNSNCWRIKNGFVPNMKVEGIFYVNDSLEKLMFEELRNACRGGGVGGFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPDAVVSP-GGVGFDINCGVRLLRTNLDERDVQPVKEQLAQSLFDHIPVGVGSKGVIPMGAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNKVSSKAKKRGLPQLGTLGAGNHYAEIQVVDDIYDDYAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKITVNDRQLACARITSQEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFSKVFGTTPDDLDMHIIYDVSHNIAKVEEHMVDGKQRTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMTETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTDVVNTCHDAGISKKAIKLRPVAVIKG 505
BLAST of mRNA_E-siliculosus-1a_F_contig1034.273.1 vs. uniprot
Match: A0A7S3M965_9STRA (RNA-splicing ligase RtcB homolog n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M965_9STRA) HSP 1 Score: 781 bits (2016), Expect = 4.340e-280 Identity = 381/504 (75.60%), Postives = 438/504 (86.90%), Query Frame = 2 Query: 35 RSYEEEKSFITREDGQRFRIDPGFVPNMKVPGYFYANARLEKLTFEELRQQSGGKGGGGFLPAVKQIANVAALPGVVKGSIGLPDVHSGYGFAVGNVAAFDMADPDAVVSPAGGVGFDINCGVRLVRTNLTLEDVLPVKEELTQSLFDHIPVGVGTKGVVPITAADLNDVLEMGIDWSIREGYAWVEDKEHCEEYGRMLQADPTKASRRAKIRGLPQLGTLGAGNHYAEIQVVEEVYDEQAAKKMGIDKVNQVCIMIHSGSRGLGHQVATDALVLMEAAMARDNIDINDRQLACAKISSQEGQDYLAGMAAAANYAWVNRAMMTFLTRRAFSKKFGKTAEELDMHVVYDVSHNIAKVEQHIVDGDLKTLLVHRKGATRAFPPHHPLIPVDYQFTGQPVIVGGTMGTCSYVLTGTQKGMDETFGSTCHGAGRAKSRNESRKTLDYEAVLGGLEKKGISIRVASPKLVMEEAPESYKDVTEVVNTCHDAGVSMRAVKLRPIAVIKG 1546 R++++EKS+I + ++ I+ GFV M G FY N+ LE L F+ELR G GGFLPAVKQIANVAALPG+V SIGLPD+HSGYGFA+GNVAAFDM +P++VVSP GGVGFDINCGVRL+RTNLT DV PV+E+L QSLFDHIPVGVG+KGV+P T ADLN+ LEMG+DWS+REGYAW EDKEHCEEYGRMLQADPTK S RAK RGLPQLGTLGAGNHY EIQVV+E++D+QAA +MGIDK+ QVCIMIHSGSRGLGHQVATDAL MEAAM RD + NDRQLACA+I+S EGQDYLAGMAAAANYAWVNR+ MTFL R+AF+K+F + ++LDMHVVYDVSHNIAKVEQH+VDG +KTLLVHRKG+TRAFPPHHPLIPVDYQF GQPV++GGTMGTCSYVLTGTQ GMDETFGSTCHGAGRA+SRN SR+TL+Y+ VL L +GI+IRVASPKLVMEEAPESYKDVT+VV+TCH AG+S + +KLRPIAVIKG Sbjct: 22 RTFDQEKSYIKKISPWKYEINKGFVNGMNCKGTFYVNSALEGLVFDELRCSCGSGAFGGFLPAVKQIANVAALPGIVHKSIGLPDLHSGYGFAIGNVAAFDMDNPESVVSP-GGVGFDINCGVRLLRTNLTEADVGPVREQLAQSLFDHIPVGVGSKGVIPTTMADLNEALEMGMDWSVREGYAWAEDKEHCEEYGRMLQADPTKVSARAKKRGLPQLGTLGAGNHYCEIQVVDEIFDQQAAARMGIDKIGQVCIMIHSGSRGLGHQVATDALTAMEAAMTRDKLVTNDRQLACARINSPEGQDYLAGMAAAANYAWVNRSSMTFLVRQAFAKQFNREPDDLDMHVVYDVSHNIAKVEQHMVDGKMKTLLVHRKGSTRAFPPHHPLIPVDYQFIGQPVLIGGTMGTCSYVLTGTQTGMDETFGSTCHGAGRAQSRNASRRTLEYQEVLDKLASQGIAIRVASPKLVMEEAPESYKDVTQVVDTCHAAGISKKCIKLRPIAVIKG 524
BLAST of mRNA_E-siliculosus-1a_F_contig1034.273.1 vs. uniprot
Match: A0A7S3BHP6_9VIRI (RNA-splicing ligase RtcB homolog n=3 Tax=Eukaryota TaxID=2759 RepID=A0A7S3BHP6_9VIRI) HSP 1 Score: 780 bits (2015), Expect = 6.630e-280 Identity = 381/508 (75.00%), Postives = 439/508 (86.42%), Query Frame = 2 Query: 35 RSYEEEKSFITREDGQRFRIDPGFVPNMKVPGYFYANARLEKLTFEELR----QQSGGKGGGGFLPAVKQIANVAALPGVVKGSIGLPDVHSGYGFAVGNVAAFDMADPDAVVSPAGGVGFDINCGVRLVRTNLTLEDVLPVKEELTQSLFDHIPVGVGTKGVVPITAADLNDVLEMGIDWSIREGYAWVEDKEHCEEYGRMLQADPTKASRRAKIRGLPQLGTLGAGNHYAEIQVVEEVYDEQAAKKMGIDKVNQVCIMIHSGSRGLGHQVATDALVLMEAAMARDNIDINDRQLACAKISSQEGQDYLAGMAAAANYAWVNRAMMTFLTRRAFSKKFGKTAEELDMHVVYDVSHNIAKVEQHIVDGDLKTLLVHRKGATRAFPPHHPLIPVDYQFTGQPVIVGGTMGTCSYVLTGTQKGMDETFGSTCHGAGRAKSRNESRKTLDYEAVLGGLEKKGISIRVASPKLVMEEAPESYKDVTEVVNTCHDAGVSMRAVKLRPIAVIKG 1546 RSY+EE +++ R D QR+RI GFVPNM V G FY N +L+ L EL + GG GFLPAVKQIANVAALPGVV S+GLPDVHSGYGFA+GNVAAFDM DP+A+VSP GGVGFDINCGVRL+RTNLT DVLP+KEEL QSLFDHIPVGVG++G++P TA DLN+VLEMG+DWS+REG+AWVEDKEHCEEYGRML ADP K S RAK RGLPQ+GTLGAGNHYAE+QVV+E++DE+AA KMGI+ V QV +MIHSGSRGLGHQVATD+L ME AMARD I++NDRQLACA+I S+EGQDYL MAAAANYAWVNR+ MTFL R+AF+K F KT +ELDMHV+YDVSHNIAK+E+H+V+G+LK LLVHRKG+TRAFPPHHPLIPVDYQ TGQPV++GGTMGTCSYVLTGT++GM ETFGSTCHGAGRA+SRN+SR LDY+ VL L+ KGISIRVASPKLVMEEAPESYKDV +VV TCH AG+S +AVKLRPIAV+KG Sbjct: 20 RSYDEEIAYLERVDDQRWRIKAGFVPNMNVDGMFYVNEKLQGLALGELEVACERAKGGXXXXGFLPAVKQIANVAALPGVVGHSVGLPDVHSGYGFAIGNVAAFDMDDPEAIVSP-GGVGFDINCGVRLIRTNLTEADVLPIKEELAQSLFDHIPVGVGSQGIIPTTAGDLNEVLEMGMDWSVREGFAWVEDKEHCEEYGRMLTADPNKVSTRAKKRGLPQMGTLGAGNHYAEVQVVDEIFDERAASKMGINSVGQVVVMIHSGSRGLGHQVATDSLTAMERAMARDGIEVNDRQLACARIGSKEGQDYLQAMAAAANYAWVNRSSMTFLVRQAFAKAFKKTPDELDMHVIYDVSHNIAKMEEHVVNGELKRLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMRETFGSTCHGAGRAQSRNKSRHNLDYQQVLDALKAKGISIRVASPKLVMEEAPESYKDVCQVVETCHMAGISKKAVKLRPIAVVKG 526
BLAST of mRNA_E-siliculosus-1a_F_contig1034.273.1 vs. uniprot
Match: A0A315VIM7_GAMAF (RNA-splicing ligase RtcB homolog n=3 Tax=Cyprinodontiformes TaxID=28738 RepID=A0A315VIM7_GAMAF) HSP 1 Score: 783 bits (2023), Expect = 4.930e-279 Identity = 385/507 (75.94%), Postives = 435/507 (85.80%), Query Frame = 2 Query: 26 TMKRSYEEEKSFITREDGQRFRIDPGFVPNMKVPGYFYANARLEKLTFEELRQQSGGKGGGGFLPAVKQIANVAALPGVVKGSIGLPDVHSGYGFAVGNVAAFDMADPDAVVSPAGGVGFDINCGVRLVRTNLTLEDVLPVKEELTQSLFDHIPVGVGTKGVVPITAADLNDVLEMGIDWSIREGYAWVEDKEHCEEYGRMLQADPTKASRRAKIRGLPQLGTLGAGNHYAEIQVVEEVYDEQAAKKMGIDKVNQVCIMIHSGSRGLGHQVATDALVLMEAAMARDNIDINDRQLACAKISSQEGQDYLAGMAAAANYAWVNRAMMTFLTRRAFSKKFGKTAEELDMHVVYDVSHNIAKVEQHIVDGDLKTLLVHRKGATRAFPPHHPLIPVDYQFTGQPVIVGGTMGTCSYVLTGTQKGMDETFGSTCHGAGRAKSRNESRKTLDYEAVLGGLEKKGISIRVASPKLVMEEAPESYKDVTEVVNTCHDAGVSMRAVKLRPIAVIKG 1546 TM RSY +E F+ + +RI GFVPNM+V G FY N LEKL FEELR G G GGFLPA+KQI NVAALPG+V SIGLPDVHSGYGFA+GN+AAFDM DP+AVVSP GGVGFDINCGVRL+RTNL DV PVKE+L QSLFDHIPVGVG+KGV+P+ A DL + LEMG+DWS+REGYAW EDKEHCEEYGRMLQADP K S +AK RGLPQLGTLGAGNHYAEIQVV+E+Y+E AAKKMGID QVC+MIHSGSRGLGHQVATDALV ME AM RD I +NDRQLACA+I+SQEGQDYL GMAAA NYAWVNR+ MTFLTR+AFSK FG T ++LDMHV+YDVSHNIAKVE+H+VDG +TLLVHRKG+TRAFPPHHPLIPVDYQ TGQPV++GGTMGTCSYVLTGT++GM ETFG+TCHGAGRA SR +SR+ LD++ VL L GI+IRVASPKLVMEEAPESYK+VT+VVNTCHDAG+S +A+KLRPIAVIKG Sbjct: 153 TMSRSYNDELQFLEKTGSTSWRIKKGFVPNMQVEGVFYVNDSLEKLIFEELRNACRGGGVGGFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPNAVVSP-GGVGFDINCGVRLLRTNLDERDVQPVKEQLAQSLFDHIPVGVGSKGVIPMGAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNKVSSKAKKRGLPQLGTLGAGNHYAEIQVVDEIYNEYAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKITVNDRQLACARITSQEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFSKVFGTTPDDLDMHVIYDVSHNIAKVEEHMVDGKQRTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMAETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTDVVNTCHDAGISKKAIKLRPIAVIKG 658
BLAST of mRNA_E-siliculosus-1a_F_contig1034.273.1 vs. uniprot
Match: W7TEQ9_9STRA (RNA-splicing ligase RtcB homolog n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TEQ9_9STRA) HSP 1 Score: 776 bits (2004), Expect = 1.730e-278 Identity = 383/504 (75.99%), Postives = 438/504 (86.90%), Query Frame = 2 Query: 35 RSYEEEKSFITREDGQRFRIDPGFVPNMKVPGYFYANARLEKLTFEELRQQSGGKGGGGFLPAVKQIANVAALPGVVKGSIGLPDVHSGYGFAVGNVAAFDMADPDAVVSPAGGVGFDINCGVRLVRTNLTLEDVLPVKEELTQSLFDHIPVGVGTKGVVPITAADLNDVLEMGIDWSIREGYAWVEDKEHCEEYGRMLQADPTKASRRAKIRGLPQLGTLGAGNHYAEIQVVEEVYDEQAAKKMGIDKVNQVCIMIHSGSRGLGHQVATDALVLMEAAMARDNIDINDRQLACAKISSQEGQDYLAGMAAAANYAWVNRAMMTFLTRRAFSKKFGKTAEELDMHVVYDVSHNIAKVEQHIVDGDLKTLLVHRKGATRAFPPHHPLIPVDYQFTGQPVIVGGTMGTCSYVLTGTQKGMDETFGSTCHGAGRAKSRNESRKTLDYEAVLGGLEKKGISIRVASPKLVMEEAPESYKDVTEVVNTCHDAGVSMRAVKLRPIAVIKG 1546 R++EEE F+ RE RFRID G VPNMKV G FY N +LE+L F EL+Q + G GGFLPAVKQIANVAALPG+V SIGLPDVHSGYGFA+GNVAAF +AD +A+VSP GGVGFDINCGVRL+RTNLT EDV +E+LTQSLFDHIPVGVG+KGV+P +AADL LEMG+DWS+REGYAW ED EHCEE GRM QADPTK RAK RGLPQLGTLGAGNHYAEIQVVEE++D +AA +MGID++ QVC+MIHSGSRGLGHQVATDALV ME AMARD I NDRQLACA+I S EGQ+YLA MAAAAN+AWVNR+ MTFLTR+AF+K F T ++LDMHV+YDVSHNIAKVE+H+ G KTLLVHRKG+TRAFPP+HPLIPVDYQFTGQPV++GGTMGTCSYVLTGT KG++ETFGSTCHGAGRA+SRN+SRKTL+Y VL LE+KGISIRVASPKLVMEEAPESYKDVT+VV+TCH+AG+S +A+KLRPIAV+KG Sbjct: 8 RTFEEEMGFLHRETPTRFRIDKGCVPNMKVEGAFYVNTKLEELMFAELKQHTTAGGVGGFLPAVKQIANVAALPGIVGRSIGLPDVHSGYGFAIGNVAAFAVADTEAIVSP-GGVGFDINCGVRLIRTNLTEEDVRGKREKLTQSLFDHIPVGVGSKGVIPTSAADLEAALEMGMDWSLREGYAWAEDNEHCEENGRMRQADPTKVGMRAKKRGLPQLGTLGAGNHYAEIQVVEEIHDPRAAARMGIDQIGQVCVMIHSGSRGLGHQVATDALVEMERAMARDGILTNDRQLACARIQSPEGQNYLAAMAAAANFAWVNRSSMTFLTRQAFAKMFEATPDDLDMHVIYDVSHNIAKVEEHMYQGRPKTLLVHRKGSTRAFPPNHPLIPVDYQFTGQPVLIGGTMGTCSYVLTGTDKGLEETFGSTCHGAGRAQSRNKSRKTLEYTEVLAALEEKGISIRVASPKLVMEEAPESYKDVTQVVDTCHEAGISRKAIKLRPIAVVKG 510
BLAST of mRNA_E-siliculosus-1a_F_contig1034.273.1 vs. uniprot
Match: K8FAV9_9CHLO (RNA-splicing ligase RtcB homolog n=1 Tax=Bathycoccus prasinos TaxID=41875 RepID=K8FAV9_9CHLO) HSP 1 Score: 776 bits (2004), Expect = 3.620e-278 Identity = 383/504 (75.99%), Postives = 436/504 (86.51%), Query Frame = 2 Query: 35 RSYEEEKSFITREDGQRFRIDPGFVPNMKVPGYFYANARLEKLTFEELRQQSGGKGGGGFLPAVKQIANVAALPGVVKGSIGLPDVHSGYGFAVGNVAAFDMADPDAVVSPAGGVGFDINCGVRLVRTNLTLEDVLPVKEELTQSLFDHIPVGVGTKGVVPITAADLNDVLEMGIDWSIREGYAWVEDKEHCEEYGRMLQADPTKASRRAKIRGLPQLGTLGAGNHYAEIQVVEEVYDEQAAKKMGIDKVNQVCIMIHSGSRGLGHQVATDALVLMEAAMARDNIDINDRQLACAKISSQEGQDYLAGMAAAANYAWVNRAMMTFLTRRAFSKKFGKTAEELDMHVVYDVSHNIAKVEQHIVDGDLKTLLVHRKGATRAFPPHHPLIPVDYQFTGQPVIVGGTMGTCSYVLTGTQKGMDETFGSTCHGAGRAKSRNESRKTLDYEAVLGGLEKKGISIRVASPKLVMEEAPESYKDVTEVVNTCHDAGVSMRAVKLRPIAVIKG 1546 R+YEEE S+I D + + GFV NM+VPG FY N L LTFEEL+Q + GGFLPAVKQIANVA+LPG+V SI LPDVHSGYGFA+GNVAAFD+ DP AVVSP GGVGFDINCGVRLVRTNLT +V P+KEE+ Q+LFDHIPVGVG KG++P+ A L+ LEMGIDW +REGYAW+EDKE CEE GRML ADP+K S+RAK RGLPQ+GTLGAGNHYAEIQVV+E+YD+ AAKKMGIDK+ QV +MIHSGSRGLGHQVATDALV ME AMA+D +++NDRQLACA+I+SQEG+DYLA MA AANYAWVNR MTFL R+AF+K F KTAE+LDMHVVYDVSHNIAK+E+HIVDG+LKTLLVHRKG+TRAFPPHHPLIPVDYQ+TGQPV+VGGTMGTCSYVLTGT+KGM ETFGSTCHGAGRA+SR+ SR+ L YE VL L+ KGISIRVASPKLVMEEAPESYKDVTEVV+TCHDAG+S + VKLRPIAVIKG Sbjct: 28 RTYEEECSYIENRDPTSYVVKIGFVANMRVPGIFYVNKFLAGLTFEELKQHAERGRAGGFLPAVKQIANVASLPGIVGRSIALPDVHSGYGFAIGNVAAFDVNDPKAVVSP-GGVGFDINCGVRLVRTNLTEAEVQPLKEEVAQALFDHIPVGVGGKGIIPVDAKTLDTALEMGIDWCVREGYAWIEDKERCEENGRMLNADPSKVSQRAKKRGLPQMGTLGAGNHYAEIQVVDEIYDQFAAKKMGIDKIGQVVVMIHSGSRGLGHQVATDALVEMEKAMAKDGLELNDRQLACARINSQEGKDYLAAMACAANYAWVNRQSMTFLCRQAFAKTFNKTAEQLDMHVVYDVSHNIAKIEEHIVDGELKTLLVHRKGSTRAFPPHHPLIPVDYQYTGQPVLVGGTMGTCSYVLTGTEKGMHETFGSTCHGAGRARSRHNSRQKLSYEQVLENLKTKGISIRVASPKLVMEEAPESYKDVTEVVDTCHDAGISKKCVKLRPIAVIKG 530
BLAST of mRNA_E-siliculosus-1a_F_contig1034.273.1 vs. uniprot
Match: RTCB_DANRE (RNA-splicing ligase RtcB homolog n=385 Tax=Euteleostomi TaxID=117571 RepID=RTCB_DANRE) HSP 1 Score: 773 bits (1996), Expect = 2.360e-277 Identity = 381/506 (75.30%), Postives = 432/506 (85.38%), Query Frame = 2 Query: 29 MKRSYEEEKSFITREDGQRFRIDPGFVPNMKVPGYFYANARLEKLTFEELRQQSGGKGGGGFLPAVKQIANVAALPGVVKGSIGLPDVHSGYGFAVGNVAAFDMADPDAVVSPAGGVGFDINCGVRLVRTNLTLEDVLPVKEELTQSLFDHIPVGVGTKGVVPITAADLNDVLEMGIDWSIREGYAWVEDKEHCEEYGRMLQADPTKASRRAKIRGLPQLGTLGAGNHYAEIQVVEEVYDEQAAKKMGIDKVNQVCIMIHSGSRGLGHQVATDALVLMEAAMARDNIDINDRQLACAKISSQEGQDYLAGMAAAANYAWVNRAMMTFLTRRAFSKKFGKTAEELDMHVVYDVSHNIAKVEQHIVDGDLKTLLVHRKGATRAFPPHHPLIPVDYQFTGQPVIVGGTMGTCSYVLTGTQKGMDETFGSTCHGAGRAKSRNESRKTLDYEAVLGGLEKKGISIRVASPKLVMEEAPESYKDVTEVVNTCHDAGVSMRAVKLRPIAVIKG 1546 M RSY +E ++ + +RI GFVPNM V G FY N LEKL FEELR G G GGFLPA+KQI NVAALPG+V SIGLPDVHSGYGFA+GN+AAFDM +PDAVVSP GGVGFDINCGVRL+RTNL DV PVKE+L QSLFDHIPVGVG+KGV+P+ A DL + LEMG+DWS+REGYAW EDKEHCEEYGRMLQADP K S +AK RGLPQLGTLGAGNHYAEIQVV+E+Y++ AAKKMGID QVC+MIHSGSRGLGHQVATDALV ME AM RD I +NDRQLACA+I+S+EGQDYL GMAAA NYAWVNR+ MTFLTR+AFSK F T ++LDMHV+YDVSHNIAKVE+H+VDG KTLLVHRKG+TRAFPPHHPLIPVDYQ TGQPV++GGTMGTCSYVLTGT++GM ETFG+TCHGAGRA SR +SR+ LD++ VL L GI+IRVASPKLVMEEAPESYK+VT+VVNTCHDAG+S +A+KLRPIAVIKG Sbjct: 1 MSRSYNDELQYLDKIHKNCWRIKKGFVPNMLVEGVFYVNDPLEKLMFEELRNACRGGGFGGFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMENPDAVVSP-GGVGFDINCGVRLLRTNLDEGDVQPVKEQLAQSLFDHIPVGVGSKGVIPMGAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNKVSSKAKKRGLPQLGTLGAGNHYAEIQVVDEIYNDYAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDRITVNDRQLACARITSEEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFSKVFSTTPDDLDMHVIYDVSHNIAKVEEHMVDGRQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMTETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTDVVNTCHDAGISKKAIKLRPIAVIKG 505
BLAST of mRNA_E-siliculosus-1a_F_contig1034.273.1 vs. uniprot
Match: RTCB_NEMVE (RNA-splicing ligase RtcB homolog n=2 Tax=Eumetazoa TaxID=6072 RepID=RTCB_NEMVE) HSP 1 Score: 773 bits (1996), Expect = 2.360e-277 Identity = 382/506 (75.49%), Postives = 431/506 (85.18%), Query Frame = 2 Query: 29 MKRSYEEEKSFITREDGQRFRIDPGFVPNMKVPGYFYANARLEKLTFEELRQQSGGKGGGGFLPAVKQIANVAALPGVVKGSIGLPDVHSGYGFAVGNVAAFDMADPDAVVSPAGGVGFDINCGVRLVRTNLTLEDVLPVKEELTQSLFDHIPVGVGTKGVVPITAADLNDVLEMGIDWSIREGYAWVEDKEHCEEYGRMLQADPTKASRRAKIRGLPQLGTLGAGNHYAEIQVVEEVYDEQAAKKMGIDKVNQVCIMIHSGSRGLGHQVATDALVLMEAAMARDNIDINDRQLACAKISSQEGQDYLAGMAAAANYAWVNRAMMTFLTRRAFSKKFGKTAEELDMHVVYDVSHNIAKVEQHIVDGDLKTLLVHRKGATRAFPPHHPLIPVDYQFTGQPVIVGGTMGTCSYVLTGTQKGMDETFGSTCHGAGRAKSRNESRKTLDYEAVLGGLEKKGISIRVASPKLVMEEAPESYKDVTEVVNTCHDAGVSMRAVKLRPIAVIKG 1546 M RSY+EE SF+ R F I GFVPNMKV G FY N LEKL F+ELR G +G GGFLP VKQIANVAALPG+V S+GLPDVHSGYGFA+GN+AAFDM+ P+AVVSP GGVGFDINCGVRL+RTNL +DV PVKE L QSLFDHIPVGVG+KGV+P+ A DL D LEMG+DWS+REGYAW EDKEHCEEYGRMLQAD K S +AK RGLPQLGTLGAGNHYAEIQVV+E+Y+E AAKKMGID QVC+MIHSGSRGLGHQVATDALV ME AM RD I++NDRQLACA I S EGQDYL GMA AANYAWVNR+ MTFLTR+AF+K F T ++LDMH++YDVSHNIAKVE+H +DG + LLVHRKG+TRAFPPHHPLIPVDYQ TGQPV++GGTMGTCSYVLTGT+KGM ETFG+TCHGAGRA SR +SR+ LDY+ VL L +KGISIRVASPKLVMEEAPESYK+VT+VV+TCH AG+S +A+KLRPIAVIKG Sbjct: 1 MPRSYKEECSFLERLSDSAFLIKKGFVPNMKVEGKFYINEHLEKLMFDELRHWCGAQGIGGFLPGVKQIANVAALPGIVGYSVGLPDVHSGYGFAIGNMAAFDMSLPEAVVSP-GGVGFDINCGVRLLRTNLEEKDVQPVKERLAQSLFDHIPVGVGSKGVIPMGAKDLEDALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADSAKVSAKAKKRGLPQLGTLGAGNHYAEIQVVDEIYNEFAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIEVNDRQLACAHIKSPEGQDYLKGMAGAANYAWVNRSSMTFLTRQAFAKVFNSTPDDLDMHLIYDVSHNIAKVEEHFLDGRQRQLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMTETFGTTCHGAGRALSRAKSRRNLDYQDVLENLAQKGISIRVASPKLVMEEAPESYKNVTDVVDTCHSAGISKKAIKLRPIAVIKG 505 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1034.273.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1034.273.1 >prot_E-siliculosus-1a_F_contig1034.273.1 ID=prot_E-siliculosus-1a_F_contig1034.273.1|Name=mRNA_E-siliculosus-1a_F_contig1034.273.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=507bp MKRSYEEEKSFITREDGQRFRIDPGFVPNMKVPGYFYANARLEKLTFEELback to top mRNA from alignment at E-siliculosus-1a_F_contig1034:3118..11753- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1034.273.1 ID=mRNA_E-siliculosus-1a_F_contig1034.273.1|Name=mRNA_E-siliculosus-1a_F_contig1034.273.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=8636bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1034:3118..11753- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1034:3118..11753- >mRNA_E-siliculosus-1a_F_contig1034.273.1 ID=mRNA_E-siliculosus-1a_F_contig1034.273.1|Name=mRNA_E-siliculosus-1a_F_contig1034.273.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=3042bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1034:3118..11753- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |