mRNA_E-siliculosus-1a_F_contig1033.269.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1033.269.1 vs. uniprot
Match: D8LKX7_ECTSI (K+ transporter, Kef-type n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKX7_ECTSI) HSP 1 Score: 1263 bits (3267), Expect = 0.000e+0 Identity = 756/931 (81.20%), Postives = 767/931 (82.38%), Query Frame = 3 Query: 579 MVLALWEGGMSPFPLHPAVTATEVFFSLCYAAHILLNLWTFGVKQYRDKKWHFTFTALAAAHLVLMCLAFLASKRSRTSGEAPPPAPARGAATTTGGLYEDDEGWWNCSRFALLGAQALRPMMLISNLKTIRRVFTNVLRTAKRTGSILMLGAVVLAFYSVLGINLFNSNQVKGYTDDGDNFNNFGSALLSLFVLVTEENFPMVADPSFTQRPLVAFPFFVSFLLLVXXXXXXXXXXXXXXXXXXXXXXXXXXXRRKARNALLAAYFVLDGDGVEGLSRDQLVGVLTVEAGVGIDREQQAEQLWHVLVPEDEDDFVLSRSYSVPIGNDRFVGGSTAQANXXXXXXXXXXXXXXXXXXXXXXTHAAKDGFRMARTRARSLPHGPSGGGHSNGNVGRGIRGGSDLRLDVHAFLRLADLLHVKVVESGEDGDGVEGGRTCFIAGYGDEGFGSAHGGQTWERGEGARGAGSLGDGKYSFREDEEELEGGA--EQERQKVCWCPRDKRGNSDSTNNSERRRADSEGCSEDGDSAAFCPQRRLKRLAHRMEEQVRAAARDMVGREWFSLMSKGIGVLLAMQAVTWTPRSQLRYDKCPLGEGEEVCDKPHESEVDFLREDLFRRLEGLVLLAFSFEMAAKVLAVGGRRLLRLHWAHRFDLIILVTCLASYLFVGVPGNRRALYVDHHPLLSDVVELPMALAVLRLVTVFPQLRKLLETMSTVAGVLMKIMVLYSCVSYTFATLGMAIFANARSDLLEPRYSFSTLPEAAMTLFFLTVSNNWNDLLYPLVDSNRLGRWSAIYFVAYMLFCATMMLDVLTGVVIEGFRVSTKGPEQAQDLGLPLASTASAGAGDATGRPTLARSDDGDSGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGHRTGERRGQLTRKASQRKYTQVRAEDMFRSEGK 3365
MVLALWEGGMSPFPLHPAV ATEVFFSLCYAAHI LNLWTFGVKQYRDK+WHFTFT LAAAHLVLMCLAFLASKRSRTS E GGLYED E WWNCSRFALLGAQALRPMMLISNLKTIRRVFTNVLRTAKRTGSIL+LGAVVLAFYSVLGINLFNS QVKGYTDDGDNFNNFGS+LLSLFVLVTEENFPMVADPSFTQRPLVAFPFFVSFLLLVXXXXXXXXXXXXXXXXXXXXXXXXXXXRRKARNALLAAYFVLDGDGVEGLSRDQLVGVLTVEAGVGIDREQ V ESGE GDG EGGRTCFIAGYGDE FGSAHGGQ W+ GEG GAGSLGDGKYSFREDEE+LEGG EQERQKVCWCPRDKRGNSDSTNNSERRRADSEGCS DGDS AFCPQRRLKRLAHRMEEQ RAAARDMVGREWFSLMSKGIGVLLAM AVTWTPRSQLRYDKCPLGEGEEVC+KPHESEV FLREDLFRRLEGLVLLAFSFEMAAKVLAVGGRRLLRLHWAHRFDLIIL TCLASYLFVG+PGNRRALYVDHHPLLSDV+ELPMALAVLRLVTVFPQLRKLLETMSTVAG+LMKIMVLYSCVSYTFATLGMAIF+NARSDLLEPRYSFSTLPEAAMTLFFLTVSNNWNDLLYPLVDSN LGRWSAIYFVAYMLFCATMMLDVLTGVVIEGFRVSTKGPEQAQ+LGL LASTASAGAGDATGRPTLARSDDGDSG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGHRTG RRGQLTRKASQRKYTQVRAEDMFRSEGK
Sbjct: 1 MVLALWEGGMSPFPLHPAVAATEVFFSLCYAAHIFLNLWTFGVKQYRDKRWHFTFTVLAAAHLVLMCLAFLASKRSRTSVEPXXXXXXXXXXXAAGGLYEDGEDWWNCSRFALLGAQALRPMMLISNLKTIRRVFTNVLRTAKRTGSILVLGAVVLAFYSVLGINLFNSKQVKGYTDDGDNFNNFGSSLLSLFVLVTEENFPMVADPSFTQRPLVAFPFFVSFLLLVXXXXXXXXXXXXXXXXXXXXXXXXXXXRRKARNALLAAYFVLDGDGVEGLSRDQLVGVLTVEAGVGIDREQ--------------------------------------------------------------------------------------------------------------------------VAESGEGGDGAEGGRTCFIAGYGDELFGSAHGGQRWDGGEGTHGAGSLGDGKYSFREDEEDLEGGGGQEQERQKVCWCPRDKRGNSDSTNNSERRRADSEGCSGDGDSVAFCPQRRLKRLAHRMEEQARAAARDMVGREWFSLMSKGIGVLLAMLAVTWTPRSQLRYDKCPLGEGEEVCNKPHESEVAFLREDLFRRLEGLVLLAFSFEMAAKVLAVGGRRLLRLHWAHRFDLIILATCLASYLFVGMPGNRRALYVDHHPLLSDVIELPMALAVLRLVTVFPQLRKLLETMSTVAGMLMKIMVLYSCVSYTFATLGMAIFSNARSDLLEPRYSFSTLPEAAMTLFFLTVSNNWNDLLYPLVDSNPLGRWSAIYFVAYMLFCATMMLDVLTGVVIEGFRVSTKGPEQAQELGLRLASTASAGAGDATGRPTLARSDDGDSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGHRTGARRGQLTRKASQRKYTQVRAEDMFRSEGK 809
BLAST of mRNA_E-siliculosus-1a_F_contig1033.269.1 vs. uniprot
Match: A0A7S1CFS5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CFS5_9STRA) HSP 1 Score: 117 bits (293), Expect = 1.360e-23 Identity = 70/212 (33.02%), Postives = 120/212 (56.60%), Query Frame = 3 Query: 2424 LEGLVLLAFSFEMAAKVLAVGGRRLLRLHWAHRFDLIILVTCLA-SYLFVGVPGNRRALYVDHHPLLSDVVELPMALAVLRLVTVFPQLRKLLETMSTVAGVLMKIMVLYSCVSYTFATLGMAIFAN-ARSDLLEPRYSFSTLPEAAMTLFFLTVSNNWNDLLYPLVDSNRLGRWSAIYFVAYMLFCATMMLDVLTGVVIEGFRVSTKGPEQ 3053
+ G+ ++A + E++ ++ A G R WA R D++ + LA L + PG D L D + L +L +R+++VF + R + T++ V M++ VLY V+Y FA +GM F + + D E R+ F T A + L L+V+NNW D++YP++ + GRW+A+YFVAY + C ++L++L+G+VIE + S + E+
Sbjct: 194 IAGIAIMAQAAELSVRIAANGFPRFWASAWA-RVDVVAVAVSLAVCILSLCAPGATLTQLPDAG--LQDAIGLLRSLRYVRVLSVFERFRAFVATVADGVAVAMRLFVLYFSVTYAFAVVGMEWFGDLGQHDDGEQRWGFETFGAAMLALTQLSVTNNWQDVMYPVLRDSAAGRWAALYFVAYFVLCVILLLNILSGIVIEAYSNSKQRLEE 402
BLAST of mRNA_E-siliculosus-1a_F_contig1033.269.1 vs. uniprot
Match: A0A7S1C3P4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C3P4_9STRA) HSP 1 Score: 76.6 bits (187), Expect = 8.420e-11 Identity = 40/110 (36.36%), Postives = 67/110 (60.91%), Query Frame = 3 Query: 924 AQALRPMMLISNLKTIRRVFTNVLRTAKRTGSILMLGAVVLAFYSVLGINLFNSNQVKGYTDDGDNFNNFGSALLSLFVLVTEENFPMVADPSFTQRPLVAFPFFVSFLL 1253
++ LRP++ I+ ++++R + +R + + +L +V + + LF++ QV GY D DNF+ FGS+LLSLF+L T EN+P + P+ RPL+ FF +FLL
Sbjct: 112 SRVLRPLLFIAKIRSVRELLRTSIRALGQMLDVCVLTLLVFVAAADVASELFSTLQVTGYRADADNFDAFGSSLLSLFILSTTENYPSIFYPALDLRPLLGSLFFGAFLL 221
BLAST of mRNA_E-siliculosus-1a_F_contig1033.269.1 vs. uniprot
Match: A0A5P9ERN1_9GAMM (Ion transport protein n=1 Tax=Microbulbifer sp. THAF38 TaxID=2587856 RepID=A0A5P9ERN1_9GAMM) HSP 1 Score: 62.8 bits (151), Expect = 1.560e-6 Identity = 53/197 (26.90%), Postives = 93/197 (47.21%), Query Frame = 3 Query: 2433 LVLLAFSFEMAAKVLAVGGR--RLLRLHWAHRFDLIILVTCLASYLFVGVPGNRRALYVDHHPLLSDVVELPMALAVLRLVTVFPQLRKLLETMSTVAGVLMKIMVLYSCVSYTFATLGMAIFANARSDLLEPRYSFSTLPEAAMTLFFLTVSNNWNDLLYPLVDSNRLGRWSAIYFVAYMLFCATMMLDVLTGVVI 3017
LVL+AF E A K+ + G R R W + FD I+ L +P L+ + LV+ FP+LR L++T+ +M I +L + Y + G +F ++P + + +LP A ++LF + +W D++Y +DS W+ +YFV++++ A +M+++ GVVI
Sbjct: 62 LVLIAFILEAAIKIASQGSRPWRYFASGW-NCFDFTIIALSL-------IPATGP---------LATLXXXXXXXXXXXLVSAFPELRTLVDTLLRSLPSMMHIAILMGIIFYIYGVAGYFLFHE-----VDPTH-WRSLPIALLSLFRIVTFEDWTDIMYTAMDSMP---WAWLYFVSFVVMGAFVMINLFIGVVI 232
BLAST of mRNA_E-siliculosus-1a_F_contig1033.269.1 vs. uniprot
Match: UPI001CF6CA03 (voltage-dependent T-type calcium channel subunit alpha-1H-like isoform X1 n=26 Tax=Thunnus TaxID=8234 RepID=UPI001CF6CA03) HSP 1 Score: 62.8 bits (151), Expect = 8.060e-6 Identity = 60/253 (23.72%), Postives = 108/253 (42.69%), Query Frame = 3 Query: 2409 DLFRRLEGLVLLAFSFEMAAKVLAVGGRRLLRLHWAHR------FDLIILVTCLASYLFVGVPGNRRALYVDHHPLLSDVVELPMALAVLRLVTVFPQLRKLLETMSTVAGVLMKIMVLYSCVSYTFATLGMAIFA------NARSDLLEPRYSFSTLPEAAMTLFFLTVSNNWNDLLYPLVDSNRLGRWSAIYFVAYMLFCATMMLDVLTGVVIEGFRVSTKGPEQAQDLGL--PLASTASAGAGDATGRPT 3125
D+ + + + F EM K++A+ W++ FD +I++ L + G AL L +RLV P LRK L + + +L ++TF+ LGM +F D + R +F +L + +T+F + +WN +LY + + WSA+YFVA ++F ++L+VL G+V++ ++ L L P +ST ++ + + PT
Sbjct: 491 DVLKTSNIIFTIIFFMEMVLKLMALS--------WSYFKDKNNIFDFVIVIISLWE-IIAKADGRLSALRAFR------------LLRFVRLVHFLPYLRKQLLVLKRTIEKAAALCMLLLFATFTFSVLGMHLFGCQFSFKTVHGDTITDRKNFDSLLWSMVTVFQILTHEDWNLVLYNAMTAT--SPWSALYFVALIIFGKHVLLNVLVGIVVKSYQAKHSSSFSDSSLSLCGPTSSTTTSSSSETDISPT 720
BLAST of mRNA_E-siliculosus-1a_F_contig1033.269.1 vs. uniprot
Match: A0A2S1JMW8_9GAMM (Ion transporter n=1 Tax=Microbulbifer sp. A4B17 TaxID=359370 RepID=A0A2S1JMW8_9GAMM) HSP 1 Score: 60.1 bits (144), Expect = 1.200e-5 Identity = 52/204 (25.49%), Postives = 96/204 (47.06%), Query Frame = 3 Query: 2412 LFRRLEGLVLLAFSFEMAAKVLAVGGR--RLLRLHWAHRFDLIILVTCLASYLFVGVPGNRRALYVDHHPLLSDVVELPMALAVLRLVTVFPQLRKLLETMSTVAGVLMKIMVLYSCVSYTFATLGMAIFANARSDLLEPRYSFSTLPEAAMTLFFLTVSNNWNDLLYPLVDSNRLGRWSAIYFVAYMLFCATMMLDVLTGVVI 3017
L + L+L +F E A K+ + G R R W + FD I+ L +P L+ + LV+ FP+LR L++T+ +M I +L S + Y + G +F + ++P + + +LP A ++LF + +W D++Y +DS W+ +YFV++++ A +M+++ GVV+
Sbjct: 55 LLGTINQLILASFVIEAAVKIASHGTRPWRYFASGW-NCFDFTIIALSL-------IPATGP---------LATLXXXXXXXXXXXLVSAFPELRTLVDTLLRSLPSMMHIALLMSIIFYIYGVAGYFLFHD-----IDPTH-WRSLPIAFLSLFRIVTFEDWTDIMYTAMDSMP---WAWLYFVSFVVMGAFVMINLFIGVVL 232
BLAST of mRNA_E-siliculosus-1a_F_contig1033.269.1 vs. uniprot
Match: A0A7S0DDD6_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DDD6_9EUKA) HSP 1 Score: 61.6 bits (148), Expect = 1.240e-5 Identity = 35/108 (32.41%), Postives = 65/108 (60.19%), Query Frame = 3 Query: 933 LRPMMLISNLKTIRRVFTNVLRTAKRTGSILMLGAVVLAFYSVLGINLFNSNQVKGYTDDGDNFNNFGSALLSLFVLVTEENFPMVADPSFTQRPLVAFPFFVSFLLL 1256
LRP++L+ + + +R V ++ TA ++L + L Y+++G LF + + D F++F ++L+SLFVL+T EN+PM P++ + P +A +F SFL++
Sbjct: 84 LRPILLLLSSRNLRMVTVSLPYTAYYLRTLLGALLLFLISYAIVGTRLFKGIYDEDWGDSA-RFDSFTTSLISLFVLLTTENYPMALYPAYEKHPTIAILYFWSFLMI 190
BLAST of mRNA_E-siliculosus-1a_F_contig1033.269.1 vs. uniprot
Match: A0A2D5L9V4_9GAMM (Ion transporter n=5 Tax=unclassified Gammaproteobacteria TaxID=33811 RepID=A0A2D5L9V4_9GAMM) HSP 1 Score: 58.5 bits (140), Expect = 3.150e-5 Identity = 46/199 (23.12%), Postives = 97/199 (48.74%), Query Frame = 3 Query: 2424 LEGLVLLAFSFEMAAKVLAVGGRRLLRLHWAHRFDLIILVTCLASYLFVGVPGNRRALYVDHHPLLSDVVELPMALAVLRLVTVFPQLRKLLETMSTVAGVLMKIMVLYSCVSYTFATLGMAIFANARSDLLEPRYSFSTLPEAAMTLFFLTVSNNWNDLLYPLVDSNRLGRWSAIYFVAYMLFCATMMLDVLTGVVIE 3020
L+ + + F FE++ + L +R H + FD +I+ L +P + L LL ++ + VLR+V++ P+LR L+ ++ L + +L + Y +A +G +IFA+ L + + + +TLF + +W D++Y +++ WS IY+++++ A L+++ G+V++
Sbjct: 55 LDVAITVFFLFELSIRFLGEPEKRAFFRHGWNVFDTLIVTVSL-------IPIDEAEL-----ALLGRLIRI---FRVLRMVSIVPELRVLVNSLLRALPQLGYVCLLMFIIFYIYAAIGTSIFASVNPVL------WGDIAVSLLTLFRVMTFEDWTDVMYETINAGF--GWSWIYYLSFIFLTAFAFLNMIIGIVVK 230
BLAST of mRNA_E-siliculosus-1a_F_contig1033.269.1 vs. uniprot
Match: A0A357LXH2_9GAMM (Ion transporter n=2 Tax=Oceanospirillales TaxID=135619 RepID=A0A357LXH2_9GAMM) HSP 1 Score: 58.2 bits (139), Expect = 4.490e-5 Identity = 46/198 (23.23%), Postives = 93/198 (46.97%), Query Frame = 3 Query: 2424 LEGLVLLAFSFEMAAKVLAVGGRRLLRLHWAHRFDLIILVTCLASYLFVGVPGNRRALYVDHHPLLSDVVELPMALAVLRLVTVFPQLRKLLETMSTVAGVLMKIMVLYSCVSYTFATLGMAIFANARSDLLEPRYSFSTLPEAAMTLFFLTVSNNWNDLLYPLVDSNRLGRWSAIYFVAYMLFCATMMLDVLTGVVI 3017
L+ V L F FE+ + +A +R L+ + FD +++V L + + + AL + L VLR+V++ P+LR LL ++ L +++L + Y +A +G F+ DL + + + +TLF + +W D++Y +D L W +Y+++++ L+++ G+V+
Sbjct: 53 LDIAVTLLFLFEITVRFIADNNKRRFFLNGWNVFDTLVVVVSL-----IPIDNSEMAL----------IGRLVRVFRVLRMVSIIPELRMLLNSLVRALPQLGYVVLLMFIIFYIYAAVGATFFSEINHDL------WGDISLSMLTLFRVMTFEDWTDVMYETMDVYPLS-W--MYYLSFIFLTTFAFLNMVIGIVV 226
BLAST of mRNA_E-siliculosus-1a_F_contig1033.269.1 vs. uniprot
Match: A0A2E8K532_9GAMM (Ion transporter n=2 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E8K532_9GAMM) HSP 1 Score: 57.8 bits (138), Expect = 5.370e-5 Identity = 35/130 (26.92%), Postives = 68/130 (52.31%), Query Frame = 3 Query: 2628 VVELPMALAVLRLVTVFPQLRKLLETMSTVAGVLMKIMVLYSCVSYTFATLGMAIFANARSDLLEPRYSFSTLPEAAMTLFFLTVSNNWNDLLYPLVDSNRLGRWSAIYFVAYMLFCATMMLDVLTGVVI 3017
V L VLR++++ P+LR LL ++ L +M L + Y +A +G +F +DL + + + +TLF + +W D++Y +++ + WS YFV+++ F A L+++ G+V+
Sbjct: 102 VARLVRVFRVLRMISIIPELRVLLNSLLVALPRLGYVMALMFIIFYIYAAVGSLLFEKINADL------WGDIAISMLTLFRVMTFEDWTDVMYEVME---VYGWSWAYFVSFIFFTAFAFLNMVIGIVV 222 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1033.269.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 14 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1033.269.1 >prot_E-siliculosus-1a_F_contig1033.269.1 ID=prot_E-siliculosus-1a_F_contig1033.269.1|Name=mRNA_E-siliculosus-1a_F_contig1033.269.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=1113bp MHRKSEITPLVVRERGSESSGNGSPNTHPKQQGNGANSTARSPPTPAKARback to top mRNA from alignment at E-siliculosus-1a_F_contig1033:1079..18297+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1033.269.1 ID=mRNA_E-siliculosus-1a_F_contig1033.269.1|Name=mRNA_E-siliculosus-1a_F_contig1033.269.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=17219bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1033:1079..18297+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1033:1079..18297+ >mRNA_E-siliculosus-1a_F_contig1033.269.1 ID=mRNA_E-siliculosus-1a_F_contig1033.269.1|Name=mRNA_E-siliculosus-1a_F_contig1033.269.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=6678bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1033:1079..18297+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |