mRNA_E-siliculosus-1a_F_contig1032.266.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1032.266.1 vs. uniprot
Match: A0A6H5JLQ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLQ9_9PHAE) HSP 1 Score: 464 bits (1193), Expect = 1.690e-153 Identity = 272/332 (81.93%), Postives = 282/332 (84.94%), Query Frame = 1 Query: 1 MYHLLCIGRARARVAAAAAATGAPAAKMGRCGGVLRALATSRGPEKTPSGDKE--------------------GGGGGAAGLAVKSMGIGAGAGSLGSLVGLGGGFVAIPFLTGWLGLTQHQAHGTSLGAVFATGAAGSTAYALAGHVDYQAAGAISVAGMAAAHAGARCTAGVDGNSLKMALGVLMLAVAPLVPLRDKLSHKGDVP-EDRSQXXXXXXXXXXXXEEATGVLDGGGLLPTEAGGERTSPSVPGVSSERVTTMLAIGAGSGFLAGVFGVGGGVLTVPSVSLATDLGHKKVLGTSLASMVLPALIGATTHYRQGNLIPRIAFPL 933
MY+LL IGRARARVAAAAA GAPAAK GRCGGVLRALATSRGP+KT SGDKE GG AAGLAV+SMGIGAGAGS+GSLVGLGGGFVAIPFLTGWLGLTQHQAHGTSLGAVFATGAAGSTAYALAGHVDYQAAGAI+VAGMA AHAGARCTAGVDGNSLKMALGVLMLAVAPLVPLRDKLSHK DV ++R + +ATG+ GG LLPTEAGGE TSPSVPGVSSERVTTMLAIGAGSGFLAGVFGVGGGVLTVPSVSLATDLGHKKVLGTSLASMVLPALIGATTHYRQGNLIPRIAFPL
Sbjct: 1 MYNLLRIGRARARVAAAAA--GAPAAKTGRCGGVLRALATSRGPDKTSSGDKEVFLDDGGAKDGADQRRILSQGGXXXAAGLAVRSMGIGAGAGSMGSLVGLGGGFVAIPFLTGWLGLTQHQAHGTSLGAVFATGAAGSTAYALAGHVDYQAAGAIAVAGMAGAHAGARCTAGVDGNSLKMALGVLMLAVAPLVPLRDKLSHKDDVSVKERHEEESEERSSA----DATGLQGGGRLLPTEAGGEGTSPSVPGVSSERVTTMLAIGAGSGFLAGVFGVGGGVLTVPSVSLATDLGHKKVLGTSLASMVLPALIGATTHYRQGNLIPRIAFPL 326
BLAST of mRNA_E-siliculosus-1a_F_contig1032.266.1 vs. uniprot
Match: D8LHF4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHF4_ECTSI) HSP 1 Score: 323 bits (829), Expect = 1.290e-101 Identity = 197/224 (87.95%), Postives = 202/224 (90.18%), Query Frame = 1 Query: 199 MGIGAGAGSLGSLVGLGGGFVAIPFLTGWLGLTQHQAHGTSLGAVFATGAAGSTAYALAGHVDYQAAGAISVAGMAAAHAGARCTAGVDGNSLKMALGVLMLAVAPLVPLRDKLSH-KG----------DVPEDRSQXXXXXXXXXXXXEEATGVLDGGGLLPTEAGGERTSPSVPGVSSERVTTMLAIGAGSGFLAGVFGVGGGVLTVPSVSLATDLGHKKVL 837
MGIGAGAGSLGSLVGLGGGFVAIPFLTGWLGLTQHQAHGTSLGAVFATGAAGSTAYALAGHVDYQAAGAI+VAGMAAAHAGARCTAGVDGNSLKMALGVLMLAVAPLVPLRDKLSH KG D+ XXXXXXXXXXXX EATG+LDGGGL+P E GGE TSPSVPGVSSERVTTMLAIGAGSGFLAGVFGVGGGVLTVPSVSLATDLGHKK +
Sbjct: 1 MGIGAGAGSLGSLVGLGGGFVAIPFLTGWLGLTQHQAHGTSLGAVFATGAAGSTAYALAGHVDYQAAGAIAVAGMAAAHAGARCTAGVDGNSLKMALGVLMLAVAPLVPLRDKLSHNKGPCLRPSTAADDIAXXXXXXXXXXXXXXXXXXEATGLLDGGGLIPMEEGGEGTSPSVPGVSSERVTTMLAIGAGSGFLAGVFGVGGGVLTVPSVSLATDLGHKKAV 224
BLAST of mRNA_E-siliculosus-1a_F_contig1032.266.1 vs. uniprot
Match: A0A836CP97_9STRA (Sulfite exporter TauE/SafE-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP97_9STRA) HSP 1 Score: 182 bits (461), Expect = 6.160e-48 Identity = 115/228 (50.44%), Postives = 142/228 (62.28%), Query Frame = 1 Query: 250 GGFVAIPFLTGWLGLTQHQAHGTSLGAVFATGAAGSTAYALAGHVDYQAAGAISVAGMAAAHAGARCTAGVDGNSLKMALGVLMLAVAPLVPLRDKLSHKGDVPEDRSQXXXXXXXXXXXXEEATGVLDGGGLLPTEAGGERTSPSVPGVSSERVTTMLAIGAGSGFLAGVFGVGGGVLTVPSVSLATDLGHKKVLGTSLASMVLPALIGATTHYRQGNLIPRIAFPL 933
GGFVAIP LTGWL LTQHQAHGTSLGAV ATGAAG+ +A AG VD+ A + VAGM + GA+ T + ++LK LGV M+ +AP+V RD+L P + A G DGGG E + +V SS+ + M AIGA SGFLAG+FGVGGG +TVP++SL TD HK+ LG SLA+MVLPA+ G HYR GNL+P +A PL
Sbjct: 1 GGFVAIPLLTGWLRLTQHQAHGTSLGAVCATGAAGAAGFAAAGQVDWMALPPMVVAGMVTSTLGAKATGRLKQSTLKRMLGVFMIGIAPVVIFRDQLLEYAHRPVHGEEPLHSNPNPSNQLGGAGG--DGGG----EHKAVVATAAVERPSSDPLR-MAAIGACSGFLAGIFGVGGGAVTVPAISLCTDFTHKEALGLSLAAMVLPAVSGGFVHYRAGNLLPAVAVPL 221
BLAST of mRNA_E-siliculosus-1a_F_contig1032.266.1 vs. uniprot
Match: A0A812LAW2_9DINO (YunE protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812LAW2_9DINO) HSP 1 Score: 155 bits (392), Expect = 4.540e-38 Identity = 99/242 (40.91%), Postives = 143/242 (59.09%), Query Frame = 1 Query: 217 AGSLGSLVGLGGGFVAIPFLTGWLGLTQHQAHGTSLGAVFATGAAGSTAYALAGHVDYQAAGAISVAGMAAAHAGARCTAGVDGNSLKMALGVLMLAVAPLVPLRDKLSHKGDVPEDRSQXXXXXXXXXXXXEEATGVLDGGGLLPTEAGGE-RTSPSVPGVSSERVTTMLAIGAGSGFLAGVFGVGGGVLTVPSVSLATDLGHKKVLGTSLASMVLPALIGATTHYRQGNLIPRIAFPLVS 939
AG LGSLVGLGGGF+A+P +T W+G++QH A G+SL V TG++G+ Y G +DY+ A AI++ GM A AGA+ A D LK+ +G+L +AV+PL+PL+ S E++ EA V +L AG E R V +ER M +G+ +GFL+G+FGVGGG LTVP+++L+T L V+GTSL +M+ PA++G + GN+ +A PL +
Sbjct: 59 AGCLGSLVGLGGGFIAVPMMTSWVGISQHLATGSSLAVVLMTGSSGAFGYIRHGQIDYEVALAIALGGMIFARAGAKLMANTDAARLKLYMGMLQVAVSPLIPLKAHFSKSRPATEEKRV-------------EAPCVDGSESIL---AGSEARAGHGV--FDAERFAKMFVVGSLAGFLSGMFGVGGGALTVPAIALSTSLPQHAVVGTSLLAMLPPAVVGTAVNLANGNISLAVAGPLAA 282
BLAST of mRNA_E-siliculosus-1a_F_contig1032.266.1 vs. uniprot
Match: A0A6U2NKE9_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A6U2NKE9_9STRA) HSP 1 Score: 154 bits (390), Expect = 6.440e-38 Identity = 108/251 (43.03%), Postives = 145/251 (57.77%), Query Frame = 1 Query: 190 VKSMGIGAGAGSLGSLVGLGGGFVAIPFLTGWL-GLTQHQAHGTSLGAVFATGAAGSTAYALAGHVDYQAAGAISVAGMAAAHAGARCTAGVDGNSLKMALGVLMLAVAPLVPLRDKLSHKGDVPEDRSQXXXXXXXXXXXXEEATGVLDGGGLLPTEAGGERTSPSVPGVSSERVTTMLAIGAGSGFLAGVFGVGGGVLTVPSVSLATDLGHKKVLGTSLASMVLPALIGATTHYRQGNLIPRIAFPLVS 939
V + GIG+ AG +GSL G+GGGFV IP LT L GL+QH AHGTSL AV ATG AG+ Y L VD AA AI+ G+ +A GA + + G SLK A G LM+ VAP+VP + K ++ + E T + GG+ + G+ ++ IG GSGFLAG+FGVGGG + VP+++++TDL H + L TSL +M LPAL G THY++GN+ R+A PL +
Sbjct: 59 VSAFGIGSFAGVMGSLAGMGGGFVMIPLLTSRLVGLSQHTAHGTSLSAVAATGIAGAFGYGL-NEVDLPAAAAIASFGIISARFGAAFSRKLSGESLKRAFGGLMICVAPIVPAKTYFVEKYGKGKNST-----------VANEDT----------EKKGGDNS-----GIELYKLIPAGMIGIGSGFLAGLFGVGGGTVVVPALTVSTDLSHYQALSTSLLAMTLPALSGTFTHYQKGNVAKRVALPLAA 282
BLAST of mRNA_E-siliculosus-1a_F_contig1032.266.1 vs. uniprot
Match: A0A7S1VQG5_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VQG5_9STRA) HSP 1 Score: 145 bits (367), Expect = 3.940e-35 Identity = 104/258 (40.31%), Postives = 139/258 (53.88%), Query Frame = 1 Query: 184 LAVKSMGIGAGAGSLGSLVGLGGGFVAIPFLTGWLGLTQHQAHGTSLGAVFATGAAGSTAYALAGHVDYQ------AAGAISVAGMAAAHAGARCTAGVDGNSLKMALGVLMLAVAPLVPLRDKLSHKGDVPEDRSQXXXXXXXXXXXXEEATGVLDGGGLLPTEAGGERTSPSVPGVSSERVTTMLAIGAGSGFLAGVFGVGGGVLTVPSVSLATDLGHKKVLGTSLASMVLPALIGATTHYRQGNLIPRIAFPLVS 939
+A K+ GIG AG+LG+L G+GGGFV +P +TG L +TQHQAHGTSL AV ATG AG+ YA +G D+ +A AI+ GM A GA T + L+ ALGV M+ VAPL+P R A + P + T VPG AIG GSG+LAG+FGVGGG + VP+++L TD+ H + LGTSL +M+LPA++G H+ ++ RIA L +
Sbjct: 37 VAPKAFGIGTVAGTLGALAGMGGGFVMVPLMTGVLRITQHQAHGTSLFAVAATGIAGALGYA-SGEGDFNDVVQWDSAAAIAACGMLTARLGAYTTVHLTEKFLQQALGVFMIGVAPLIPAR-----------------------------AWTLKQAKSTQPADEYDIYTKIVVPG----------AIGLGSGYLAGLFGVGGGAIVVPALALGTDMNHYQALGTSLCAMILPAVVGTYYHFASNHVQMRIAPALAA 254
BLAST of mRNA_E-siliculosus-1a_F_contig1032.266.1 vs. uniprot
Match: A0A8J5XLZ6_DIALT (Uncharacterized protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XLZ6_DIALT) HSP 1 Score: 145 bits (367), Expect = 6.430e-35 Identity = 92/225 (40.89%), Postives = 128/225 (56.89%), Query Frame = 1 Query: 244 LGGGFVAIPFLTGWLGLTQHQAHGTSLGAVFATGAAGSTAYALAGHVDYQAAGAISVAGMAAAHAGARCTAGVDGNSLKMALGVLMLAVAPLVPLRDKLSHKGDVPEDRSQXXXXXXXXXXXXEEATGVLDGGGLLPTEAGGERTSPSVPGVSSERVTTMLAIGAGSGFLAGVFGVGGGVLTVPSVSLATDLGHKKVLGTSLASMVLPALIGATTHYRQGNLIPR 918
LGGG V +P LT + GL+QH AHGTSL AV +TG G ++A G VD+ AA AI+ +A AGAR T+ + G +LK +GV M+AVAPLVPL+ L H+ GG A E+ +P +S + A+G SG L+G+FGVGGG + P+++ D+ H+ VLGT+LA+MVLP++IGA TH++ GN+ R
Sbjct: 75 LGGGVVMVPLLTSFAGLSQHAAHGTSLVAVVSTGLGGCVSFASHGQVDWPAAAAIAATASLSAVAGARATSRLSGATLKRLMGVFMMAVAPLVPLKGYLQHRSSA---------------------------GGERTCAADAEQHAP----LSYSALAQCAAVGVFSGALSGMFGVGGGSIVTPALAFIADMPHQAVLGTTLAAMVLPSMIGARTHWQMGNVAVR 268
BLAST of mRNA_E-siliculosus-1a_F_contig1032.266.1 vs. uniprot
Match: B7G9A3_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G9A3_PHATC) HSP 1 Score: 155 bits (392), Expect = 8.160e-35 Identity = 111/241 (46.06%), Postives = 135/241 (56.02%), Query Frame = 1 Query: 205 IGAGAGSLGSLVGLGGGFVAIPFLTGW-LGLTQHQAHGTSLGAVFATGAAGSTAYALAGHVDYQAAGAISVAGMAAAHAGARCTAGVDGNSLKMALGVLMLAVAPLVPLRDKLSHKGDVPEDRSQXXXXXXXXXXXXEEATGVLDGGGLLPTEAGGERTSPSVPGVSSERVTTMLAIGAGSGFLAGVFGVGGGVLTVPSVSLATDLGHKKVLGTSLASMVLPALIGATTHYRQGNLIPRIA 924
IG AG LGSL G+GGGFV IP +T L LTQHQAHGTSL AV ATG AG+ +Y V +++A AI++ GM A GA T +L+ ALGVLML +AP VP + L+ + + E EA T PS P R AIG GSGFLAG+FGVGGG + VP+++LATD H + L TSLA+M LPAL G THYR GN+ RIA
Sbjct: 53 IGGTAGVLGSLAGMGGGFVMIPLMTSRALRLTQHQAHGTSLFAVSATGVAGAWSYVH--EVQWESAAAIALCGMVTARMGAHVTTRTSATTLRKALGVLMLLMAPAVPAKAYLTQRAEATEASR---------------------------AEA---ETMPSEP---LSRFLPPAAIGLGSGFLAGLFGVGGGTIVVPALTLATDCTHYQALATSLAAMTLPALSGTYTHYRAGNVAVRIA 258
BLAST of mRNA_E-siliculosus-1a_F_contig1032.266.1 vs. uniprot
Match: A0A7S4EEL0_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EEL0_9STRA) HSP 1 Score: 142 bits (357), Expect = 2.980e-34 Identity = 100/246 (40.65%), Postives = 131/246 (53.25%), Query Frame = 1 Query: 193 KSMGIGAGAGSLGSLVGLGGGFVAIPFLTG--WLGLTQHQAHGTSLGAVFATGAAGSTAYALAGHVDYQAAGAISVAGMAAAHAGARCTAGVDGNSLKMALGVLMLAVAPLVPLRDKLSHKGDVPEDRSQXXXXXXXXXXXXEEATGVLDGGGLLPTEAGGERTSPSVPGVSSERVTTMLAIGAGSGFLAGVFGVGGGVLTVPSVSLATDLGHKKVLGTSLASMVLPALIGATTHYRQGNLIPRIA 924
KS IG AG+ GSL G+GGGF+ IP +T +GLTQHQAH TSL AV TG AG+ +Y+ G VDY+ A AI+V GMA A G ++ + +LK ALG ML +AP +P ++ L+ T+ T S+ R IG SGFLAGVFGVGGG + VP++SL TD+ H + LGTSL +MV A++G TH +G + RIA
Sbjct: 5 KSFAIGTIAGTCGSLAGMGGGFLMIPLMTSKRLVGLTQHQAHATSLFAVATTGMAGALSYS--GQVDYEVATAIAVCGMATATLGVHASSKMSQTTLKKALGAFMLLIAPTIPAKEY------------------------------------LISTKV---ETEESIEHSIVRRYAVPAGIGCCSGFLAGVFGVGGGAIVVPALSLFTDMNHYQALGTSLCAMVPTAVVGTVTHMTKGTVAMRIA 209
BLAST of mRNA_E-siliculosus-1a_F_contig1032.266.1 vs. uniprot
Match: A0A8J2SWV9_9STRA (Hypothetical protein n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SWV9_9STRA) HSP 1 Score: 139 bits (350), Expect = 4.910e-33 Identity = 101/243 (41.56%), Postives = 130/243 (53.50%), Query Frame = 1 Query: 205 IGAGAGSLGSLVGLGGGFVAIPFLTGWLGLTQHQAHGTSLGAVFATGAAGSTAYALAGHVDYQAAGAISVAGMAAAHAGARCTAGVDGNSLKMALGVLMLAVAPLVPLRDKLSHKGDVPEDRSQXXXXXXXXXXXXEEATGVLDGGGLLPTEAGGERTSPSVPGVSSERVTTMLAIGAGSGFLAGVFGVGGGVLTVPSVSLATDLGHKKVLGTSLASMVLPALIGATTHYRQGNLIPRIAFPL 933
+GA AG+LGSL G+GGGFVAIP +T LG++QH AHGTSL V TGAAG+ AYA G VD +AA A++ G +L ALG MLAVAP+VP R+++ +A G D T+ G + VP +L +GA +GFLAG+FGVGGG + VP ++LATDL HK LGTSL +MV + G H R G++ A PL
Sbjct: 33 VGATAGTLGSLAGMGGGFVAIPLMTR-LGVSQHTAHGTSLVGVVCTGAAGAAAYAADGAVDVKAAAAVAATGALTXXXXXXXXXXXXXATLSRALGAFMLAVAPIVPGRNQIL------------------------DAIGATDR-----TKTGDDPVREVVP---------LLGVGAAAGFLAGLFGVGGGAVVVPLLALATDLDHKTALGTSLCAMVPTGVAGVLAHRRLGHVKLAAAAPL 236 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1032.266.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1032.266.1 >prot_E-siliculosus-1a_F_contig1032.266.1 ID=prot_E-siliculosus-1a_F_contig1032.266.1|Name=mRNA_E-siliculosus-1a_F_contig1032.266.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=342bp MYHLLCIGRARARVAAAAAATGAPAAKMGRCGGVLRALATSRGPEKTPSGback to top mRNA from alignment at E-siliculosus-1a_F_contig1032:27373..37182+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1032.266.1 ID=mRNA_E-siliculosus-1a_F_contig1032.266.1|Name=mRNA_E-siliculosus-1a_F_contig1032.266.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=9810bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1032:27373..37182+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1032:27373..37182+ >mRNA_E-siliculosus-1a_F_contig1032.266.1 ID=mRNA_E-siliculosus-1a_F_contig1032.266.1|Name=mRNA_E-siliculosus-1a_F_contig1032.266.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2052bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1032:27373..37182+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |