mRNA_E-siliculosus-1a_F_contig1031.263.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1031.263.1 vs. uniprot
Match: D7FK94_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK94_ECTSI) HSP 1 Score: 1179 bits (3051), Expect = 0.000e+0 Identity = 715/862 (82.95%), Postives = 745/862 (86.43%), Query Frame = 1 Query: 1 MNIGASGAFESGIHPPPSFWSTSAVNQAAPTTAAVADDFHAPFGGHRPQGHREYDSRFDGAATADTVCSMLRALETASDRCKKPPGVVAAGAGKGTGGGRVVGGRVRVSVKRLRPRRNLAGGSRRGRQARSXXXXXXXXXXXXXXXXXXDSPTARECWGDDEPVSLLHESPSRVESRSLSRASSVRGTSDRARSPSPASSPNRTLRWARCGSGTDDREGRDGVTHSPSRRGGGQLGERFLDNHSRPRSPGSPRRDPALDKEGKGRTTREGLAFLQIQRDLLKRLEDLFVAIADDRRHELVALKREEDSWKTAAMQRARRDLRTASTTCEDHPVFAAGRNPAASTTLFSGSTSLEERTRDRIAEEGPGEEAMRAVGLVRDDEDSRDEGESQSPGRAGERGRRGGGGGWRLPARVVKEMRREFDRKMDQETAEVLEQENKALLEARARLAEREGARTKRELQDLSERLTNDGRVALASLRRELEAEEEKRLAEERGNLKEALARSLQQER----------ERLVTER----KLKVFDARDASGRESSQVAANLWEQAERSTSARREEAVRLLDEAADRARVKLDELLAEQEEQGLRAIRDRSSAERKAALKRIREEGERRCLKELKALADGASQKNEAWLRMVFGGLGKQFERGDESTRAGATAAXXXXXXXXXXXXXXXXXXLDEDGGSVSPALRLRAVEASNDCERLGRRLVELVIKEASMRLRESDFDVIPREHKAQESGTTASATASIGNSNMSKSDVDKTANEPQDLAHRGRNQHRTGNSSSGDAPREKRCQGCERLAHANVELTRLLLQTSTMRAREEARCSDTPITANTPPSPPTTAADTQRQGAARTGRVAPTKNK 2544
M+ GA G FESGIHPPPSFWSTSA NQAAPTTAAVADDFH GGHRPQGHREYDSRFDGAATADTVCSMLRALETASDR KKPPG+VAAGAG+GTGGGR VGG VR +VKRLRPRRNLAGGSRR XXXXXXXXXXXXXXXXXXDSPT RECWGDDEPVSLLHESPSRV SRS SRAS+VRGTSDRARSPSPASSPNRTLRWA C EGRD VTHSPSRRGGGQLGERFLD+ SRPRSPG+PRRDPALD+EGKG TTREG+AFLQIQ+DLLKRLEDLFVAIADDRRHELVALKREEDSWKT+AMQRARRDLRTAS+T E++PVFAAGRNPAASTTLFSGSTSLEERTRDRIAEEGPGEEAMRAVGLVRD EDS GGWRLP RVV+EMRREFDRKMDQE+AEVLEQENKALLEARARLAEREGARTKRELQDLSERLTNDGR ALASLRRELE EEEKRLAEERGNLKEALA L + L + R ++ F S RESS VAANLW+QAERSTSARREEA+RLL EAADRARVKLDELL EQEEQGLRAIRDRSSAERKAALKRIREEGERRCLKELKALADGASQKNEAWLRMV GGLGK+ +RG E+ G T XXXXXXXXXXXXXXXXXX+DEDGGSVSPALRLRAVEASN+CERLGRRLVELVIKEASMRLRESDFDV PREHKA+ESGTTASATASIGN NM K DVDKT EPQDLAHRGRNQHRTGNS SGDAP EKRCQGC+RLAHANVELTRLLLQTSTMRAREE RCSDTPITANTPPSPPT AA QRQG ART R T+NK
Sbjct: 1 MSFGAPGVFESGIHPPPSFWSTSAANQAAPTTAAVADDFHTHSGGHRPQGHREYDSRFDGAATADTVCSMLRALETASDRRKKPPGMVAAGAGQGTGGGRAVGGNVRGTVKRLRPRRNLAGGSRREXXXXXXXXXXXXXXXXXXXXXXXDSPTVRECWGDDEPVSLLHESPSRVGSRSSSRASTVRGTSDRARSPSPASSPNRTLRWAPCERXXXXXEGRDRVTHSPSRRGGGQLGERFLDDQSRPRSPGTPRRDPALDEEGKGGTTREGVAFLQIQKDLLKRLEDLFVAIADDRRHELVALKREEDSWKTSAMQRARRDLRTASSTYEEYPVFAAGRNPAASTTLFSGSTSLEERTRDRIAEEGPGEEAMRAVGLVRDGEDSXXXXXXXXXXXXXXXXXXXXXGGWRLPMRVVEEMRREFDRKMDQESAEVLEQENKALLEARARLAEREGARTKRELQDLSERLTNDGRDALASLRRELEVEEEKRLAEERGNLKEALAHDLPSSTPSEPPSNTLYKSLNSNRGERHNIRHFFCCCTSRRESSHVAANLWKQAERSTSARREEALRLLGEAADRARVKLDELLVEQEEQGLRAIRDRSSAERKAALKRIREEGERRCLKELKALADGASQKNEAWLRMVLGGLGKKKQRGGETIMEG-TXXXXXXXXXXXXXXXXXXXXIDEDGGSVSPALRLRAVEASNNCERLGRRLVELVIKEASMRLRESDFDVTPREHKARESGTTASATASIGNINMKKRDVDKTTTEPQDLAHRGRNQHRTGNSCSGDAPGEKRCQGCDRLAHANVELTRLLLQTSTMRAREEGRCSDTPITANTPPSPPTAAAHAQRQGTARTARAXATRNK 861
BLAST of mRNA_E-siliculosus-1a_F_contig1031.263.1 vs. uniprot
Match: A0A6H5KCA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCA0_9PHAE) HSP 1 Score: 474 bits (1220), Expect = 2.930e-154 Identity = 285/311 (91.64%), Postives = 289/311 (92.93%), Query Frame = 1 Query: 1111 MRAVGLVRDDEDSRDEGESQSPGRAGERGRRGGGGGWRLPARVVKEMRREFDRKMDQETAEVLEQENKALLEARARLAEREGARTKRELQDLSERLTNDGRVALASLRRELEAEEEKRLAEERGNLKEALARSLQQERERLVTERKLKVFDARDASGRESSQVAANLWEQAERSTSARREEAVRLLDEAADRARVKLDELLAEQEEQGLRAIRDRSSAERKAALKRIREEGERRCLKELKALADGASQKNEAWLRMVFGGLGKQFERGDESTRAGATAAXXXXXXXXXXXXXXXXXXLDEDGGSVSPALRL 2043
MRAVGLVRD EDS DEGESQSPGR GERGRRGGGGGWRLP RVV+EMRREFDRKMDQE+AE ENKALLEARARLAEREGARTKRELQDLSERLTNDGR ALAS RR+LEAEEEKRLAEERGNLKEALAR+LQQERERLVTERKLKVFDARDASGRESSQVAANLWEQAERSTSARREE VRLLDEAADRARVKLDELLAEQEEQGLRAIRDRSSAERKAALKRIREEGERRCLKELKALAD ASQKNEAWLRMVFGGLGKQFERGDESTRAGATAA XXXXXXXXLDEDGGSVSPALRL
Sbjct: 1 MRAVGLVRDGEDSTDEGESQSPGRVGERGRRGGGGGWRLPTRVVEEMRREFDRKMDQESAE----ENKALLEARARLAEREGARTKRELQDLSERLTNDGRDALASFRRDLEAEEEKRLAEERGNLKEALARALQQERERLVTERKLKVFDARDASGRESSQVAANLWEQAERSTSARREEVVRLLDEAADRARVKLDELLAEQEEQGLRAIRDRSSAERKAALKRIREEGERRCLKELKALADSASQKNEAWLRMVFGGLGKQFERGDESTRAGATAAAAENGMRGLGXXXXXXXXLDEDGGSVSPALRL 307
BLAST of mRNA_E-siliculosus-1a_F_contig1031.263.1 vs. uniprot
Match: A0A6H5JV24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV24_9PHAE) HSP 1 Score: 205 bits (522), Expect = 1.580e-57 Identity = 108/122 (88.52%), Postives = 110/122 (90.16%), Query Frame = 1 Query: 1 MNIGASGAFESGIHPPPSFWSTSAVNQAAPTTAAVADDFHAPFGGHRPQGHREYDSRFDGAATADTVCSMLRALETASDRCKKPPGVVAAGAGKGTGGGRVVGGRVRVSVKRLRPRRNLAGG 366
MN GASGAFESGIHPPPSFWSTSAVNQA P AA ADDFHAPFGGHRPQGHREYDSR D AATADTVCSMLR LE ASDR KKPPGVV AGAGKG+GGGRVVGG+VR SVKRLRPRRNLAGG
Sbjct: 1 MNFGASGAFESGIHPPPSFWSTSAVNQAVP--AADADDFHAPFGGHRPQGHREYDSRCDVAATADTVCSMLRTLENASDRRKKPPGVVEAGAGKGSGGGRVVGGKVRGSVKRLRPRRNLAGG 120 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1031.263.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1031.263.1 >prot_E-siliculosus-1a_F_contig1031.263.1 ID=prot_E-siliculosus-1a_F_contig1031.263.1|Name=mRNA_E-siliculosus-1a_F_contig1031.263.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=895bp MNIGASGAFESGIHPPPSFWSTSAVNQAAPTTAAVADDFHAPFGGHRPQGback to top mRNA from alignment at E-siliculosus-1a_F_contig1031:25483..38039+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1031.263.1 ID=mRNA_E-siliculosus-1a_F_contig1031.263.1|Name=mRNA_E-siliculosus-1a_F_contig1031.263.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=12557bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1031:25483..38039+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1031:25483..38039+ >mRNA_E-siliculosus-1a_F_contig1031.263.1 ID=mRNA_E-siliculosus-1a_F_contig1031.263.1|Name=mRNA_E-siliculosus-1a_F_contig1031.263.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=5370bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1031:25483..38039+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |