mRNA_E-siliculosus-1a_F_contig10307.259.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10307.259.1 vs. uniprot
Match: A0A6H5KG52_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG52_9PHAE) HSP 1 Score: 100 bits (250), Expect = 1.490e-23 Identity = 48/50 (96.00%), Postives = 48/50 (96.00%), Query Frame = 1 Query: 10 RDILLSTKRTSSGGDVWVCVDRLCGMSRELVVVCPASNEADPLHISAEFE 159
RDILLSTKRTSSGGDVWVCVDRLCGMSRELVVVCPASNE D LHISAEFE
Sbjct: 317 RDILLSTKRTSSGGDVWVCVDRLCGMSRELVVVCPASNETDSLHISAEFE 366
BLAST of mRNA_E-siliculosus-1a_F_contig10307.259.1 vs. uniprot
Match: D8LM66_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM66_ECTSI) HSP 1 Score: 90.5 bits (223), Expect = 4.610e-20 Identity = 41/43 (95.35%), Postives = 43/43 (100.00%), Query Frame = 1 Query: 31 KRTSSGGDVWVCVDRLCGMSRELVVVCPASNEADPLHISAEFE 159
+RTSSGGDVWVCVDRLCGMSRELVVVCPA+NEADPLHISAEFE
Sbjct: 149 ERTSSGGDVWVCVDRLCGMSRELVVVCPATNEADPLHISAEFE 191 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10307.259.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10307.259.1 >prot_E-siliculosus-1a_F_contig10307.259.1 ID=prot_E-siliculosus-1a_F_contig10307.259.1|Name=mRNA_E-siliculosus-1a_F_contig10307.259.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=53bp MCNRDILLSTKRTSSGGDVWVCVDRLCGMSRELVVVCPASNEADPLHISAback to top mRNA from alignment at E-siliculosus-1a_F_contig10307:511..669+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig10307.259.1 ID=mRNA_E-siliculosus-1a_F_contig10307.259.1|Name=mRNA_E-siliculosus-1a_F_contig10307.259.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=159bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10307:511..669+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10307:511..669+ >mRNA_E-siliculosus-1a_F_contig10307.259.1 ID=mRNA_E-siliculosus-1a_F_contig10307.259.1|Name=mRNA_E-siliculosus-1a_F_contig10307.259.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=318bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10307:511..669+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |