mRNA_E-siliculosus-1a_F_contig10306.258.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10306.258.1 vs. uniprot
Match: A0A6H5K0F2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0F2_9PHAE) HSP 1 Score: 162 bits (411), Expect = 2.960e-49 Identity = 95/108 (87.96%), Postives = 95/108 (87.96%), Query Frame = 2 Query: 2 VGAGGAGGAGNQWRGQDILTKLASLQGMVDSLTGFAGEEAALTATGGG---DQDLHSNASNISIAHRPSQSTPFGRHXXXXXXXXQGQPPLPPICPILISQNGFFASE 316
VGAGGAGGAGNQWR QDILTKLA LQGMVDSLTGFAGEEA LTA DQDLH NASNIS AHRPSQSTPFGRHXXXXXXXXQGQP LPPICPILISQNGFFASE
Sbjct: 18 VGAGGAGGAGNQWRDQDILTKLAGLQGMVDSLTGFAGEEATLTAAXXXXXXDQDLHYNASNISAAHRPSQSTPFGRHXXXXXXXXQGQPRLPPICPILISQNGFFASE 125
BLAST of mRNA_E-siliculosus-1a_F_contig10306.258.1 vs. uniprot
Match: D7FZ80_ECTSI (Putative Mn/Fe superoxide dismutase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ80_ECTSI) HSP 1 Score: 62.4 bits (150), Expect = 3.770e-9 Identity = 32/36 (88.89%), Postives = 32/36 (88.89%), Query Frame = 2 Query: 2 VGAGGAGGAGNQWRGQDILTKLASLQGMVDSLTGFA 109
VGAG GAGNQWRGQDILTKLASLQGMVDSL GFA
Sbjct: 334 VGAGXXXGAGNQWRGQDILTKLASLQGMVDSLAGFA 369 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10306.258.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10306.258.1 >prot_E-siliculosus-1a_F_contig10306.258.1 ID=prot_E-siliculosus-1a_F_contig10306.258.1|Name=mRNA_E-siliculosus-1a_F_contig10306.258.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=106bp GRCRGGGRRGKPVARPGHPDQAGQPAGHGRLPHGLCRRRSGTNGHRRRRPback to top mRNA from alignment at E-siliculosus-1a_F_contig10306:912..2046+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig10306.258.1 ID=mRNA_E-siliculosus-1a_F_contig10306.258.1|Name=mRNA_E-siliculosus-1a_F_contig10306.258.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1135bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10306:912..2046+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10306:912..2046+ >mRNA_E-siliculosus-1a_F_contig10306.258.1 ID=mRNA_E-siliculosus-1a_F_contig10306.258.1|Name=mRNA_E-siliculosus-1a_F_contig10306.258.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=636bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10306:912..2046+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |