mRNA_E-siliculosus-1a_F_contig1029.245.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1029.245.1 vs. uniprot
Match: D7FLY0_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLY0_ECTSI) HSP 1 Score: 290 bits (743), Expect = 2.890e-99 Identity = 146/150 (97.33%), Postives = 149/150 (99.33%), Query Frame = 1 Query: 1 MLNKGARINNRLKNAARAVSSALNKDSREAGADGDDDSKVPTKTELSSLTSKMDSDKTGKVDFGSFFAAMAAFMKPQYGREKLDKAFDEISGGLDEIDASFLHRTMVHLGQSTIRYADCEAMICEVDRNGHGRISKRDFHHLQTCTTDNI 450
MLNKGARINNRLKNAARAVSSALNKDSREAGADGDDDSKVPTK ELSSLTSKMDSDKTGKVDFGSFFAAMAAFMKP+YGREKLD+AFDEISGGLDEIDA+FLHRTMVHLGQSTIRYADCEAMICEVDRNGHGRISKRDFHHLQTCTTDNI
Sbjct: 1 MLNKGARINNRLKNAARAVSSALNKDSREAGADGDDDSKVPTKAELSSLTSKMDSDKTGKVDFGSFFAAMAAFMKPKYGREKLDRAFDEISGGLDEIDATFLHRTMVHLGQSTIRYADCEAMICEVDRNGHGRISKRDFHHLQTCTTDNI 150
BLAST of mRNA_E-siliculosus-1a_F_contig1029.245.1 vs. uniprot
Match: A0A835YZ87_9STRA (EF-hand domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ87_9STRA) HSP 1 Score: 73.2 bits (178), Expect = 6.750e-14 Identity = 39/107 (36.45%), Postives = 57/107 (53.27%), Query Frame = 1 Query: 118 VPTKTELSSLTSKMDSDKTGKVDFGSFFAAMAAFMKPQYGREKLDKAFDEISGGLDE-------IDASFLHRTMVHLGQSTIRYADCEAMICEVDRNGHGRISKRDF 417
+PT EL + + MD DKTG +DF SFF+ +A +KP Y + L+ AF I G + + L M LGQ + DC+ ++ E+DR G G +S+ DF
Sbjct: 3 IPTAQELEDMKAGMDPDKTGHIDFPSFFSVLAISLKPVYSEKMLNSAFAHIVGVPESAISDDTVLSRGQLRACMHRLGQVRLSLDDCDDIVREMDRTGRGAVSRADF 109 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1029.245.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1029.245.1 >prot_E-siliculosus-1a_F_contig1029.245.1 ID=prot_E-siliculosus-1a_F_contig1029.245.1|Name=mRNA_E-siliculosus-1a_F_contig1029.245.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=151bp MLNKGARINNRLKNAARAVSSALNKDSREAGADGDDDSKVPTKTELSSLTback to top mRNA from alignment at E-siliculosus-1a_F_contig1029:36549..38040+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1029.245.1 ID=mRNA_E-siliculosus-1a_F_contig1029.245.1|Name=mRNA_E-siliculosus-1a_F_contig1029.245.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1492bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1029:36549..38040+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1029:36549..38040+ >mRNA_E-siliculosus-1a_F_contig1029.245.1 ID=mRNA_E-siliculosus-1a_F_contig1029.245.1|Name=mRNA_E-siliculosus-1a_F_contig1029.245.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=906bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1029:36549..38040+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |