mRNA_E-siliculosus-1a_F_contig10283.240.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10283.240.1 vs. uniprot
Match: D8LK31_ECTSI (Geranylgeranyl transferase type-2 subunit alpha n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK31_ECTSI) HSP 1 Score: 383 bits (983), Expect = 1.190e-130 Identity = 190/233 (81.55%), Postives = 193/233 (82.83%), Query Frame = 1 Query: 1 AIRAQLSRIGDAHSRQGGSDGGDKXXXXXXXXXXXXXXXXXXXXKNIYEEELALSVDCIKRNPKSYPAWHHHKWALERGLDLLGGRSALARDLALCATFLELDXXXXXXXXXXXXVAERMGLSAREEFDFTTDKIKQNFSNYSAFHFRSKVLPRMVEEAGHDRWQLLSDELDLTHDAMFTEPADQSVWWYHHFLLTWADDGADSCFDSERYENVLRAEAATLGELIEVEGRCK 699 A+ A+LSRI DAHSRQGGSD GDK K IYEEELALSVDCIKRNPKSYPAWHHHKWALERGLDLLGGRSALA DLALCATFLELD VAERMGLSAREEFDFTTDKIKQNFSNYSAFHFRSKVLPRMVEEAGHDRWQLLSDELDLTHDAMFTEPADQSVWWYHHFLLTWADDG DSC DSERYEN+LRAEAATLGELIEVE RCK Sbjct: 70 AVLAELSRIEDAHSRQGGSDDGDKAAEEISSGTLLSPSVQEQQKKKIYEEELALSVDCIKRNPKSYPAWHHHKWALERGLDLLGGRSALAGDLALCATFLELDGRNFHCWAHRMWVAERMGLSAREEFDFTTDKIKQNFSNYSAFHFRSKVLPRMVEEAGHDRWQLLSDELDLTHDAMFTEPADQSVWWYHHFLLTWADDGTDSCSDSERYENILRAEAATLGELIEVEVRCK 302
BLAST of mRNA_E-siliculosus-1a_F_contig10283.240.1 vs. uniprot
Match: A0A835Z1Z5_9STRA (Geranylgeranyl transferase type-2 subunit alpha n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1Z5_9STRA) HSP 1 Score: 187 bits (476), Expect = 7.840e-55 Identity = 91/188 (48.40%), Postives = 116/188 (61.70%), Query Frame = 1 Query: 139 IYEEELALSVDCIKRNPKSYPAWHHHKWALERGLDLLGGRSALARDLALCATFLELDXXXXXXXXXXXXVAERMGLSAREEFDFTTDKIKQNFSNYSAFHFRSKVLPRMVEEAGHDR-WQLLSDELDLTHDAMFTEPADQSVWWYHHFLLTWADDGADSCFDSERYENVLRAEAATLGELIEVEGRCK 699 + E+ELAL+ KRNPK Y AWHH +W LERG D +GG +A R+L LC FL LD V E+ GLSA E+F FTT+KI +NFSNYSAFH+RSK+LP + E G L+ EL++ H A FTEP DQS WWYH FL+ WA + ++Y +L+ E + EL+ VE RCK Sbjct: 99 VVEQELALAAAAFKRNPKCYSAWHHRRWVLERGADAIGGEAAYRRELELCRQFLLLDSRNFHCWAYRGWVVEQAGLSAEEDFAFTTEKILENFSNYSAFHYRSKLLPAVAEARGAGGVLTLVEQELEMVHQAFFTEPDDQSAWWYHRFLVGWAAEALHGTEHHDKYPELLQKEVDCIRELLFVEERCK 286
BLAST of mRNA_E-siliculosus-1a_F_contig10283.240.1 vs. uniprot
Match: A4SAM5_OSTLU (Geranylgeranyl transferase type-2 subunit alpha n=2 Tax=Ostreococcus sp. 'lucimarinus' TaxID=242159 RepID=A4SAM5_OSTLU) HSP 1 Score: 128 bits (322), Expect = 1.300e-32 Identity = 70/191 (36.65%), Postives = 99/191 (51.83%), Query Frame = 1 Query: 142 YEEELALSVDCIKRNPKSYPAWHHHKWALERGLDLLG-----GRSALARDLALCATFLELDXXXXXXXXXXXXVAERMGLSAREEFDFTTDKIKQNFSNYSAFHFRSKVLPRMVEEAGHDRWQLLSDELDLTHDAMFTEPADQSVWWYHHFLLTWADDGADSCFDSERYENVLRAEAATLGELIEVEGRCK 699 + +EL +S ++ NPKSYP+W+H KW L R ++ G R L R+ LCA L D VAE++G EE +T KI+ NFSNYSA+H+RS +L E G + L E +L +A +TEP DQS W YH W A + D++ E++L E T E+ ++E CK Sbjct: 51 WSDELRVSETALRNNPKSYPSWYHRKWVLRRMIEAFGTEEGKARETLEREAKLCADMLNADDRNFHCWAYRRFVAEKLGRGVDEELQYTLTKIENNFSNYSAWHYRSAIL----ESRGAADAETLEREFELASNAFYTEPEDQSAWMYHR----WLTSRARAIEDAKDRESLLERERQTCREVSDLEPTCK 233
BLAST of mRNA_E-siliculosus-1a_F_contig10283.240.1 vs. uniprot
Match: A0A7R9U2X8_9STRA (Geranylgeranyl transferase type-2 subunit alpha n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U2X8_9STRA) HSP 1 Score: 128 bits (322), Expect = 7.970e-32 Identity = 82/188 (43.62%), Postives = 105/188 (55.85%), Query Frame = 1 Query: 136 NIYEEELALSVDCIKRNPKSYPAWHHHKWALERGLDLLGGRS-ALARDLALCATFLELDXXXXXXXXXXXXVAERMGLSAREEFDFTTDKIKQNFSNYSAFHFRSKVLPRMVEEAGHDRWQLLSDELDLTHDAMFTEPADQSVWWYHHFLLTWADDGADSCFDSERYENVLRAEAATLGELIEVEGRC 696 ++ +EEL +S + +KR PKSYPAW+H KW L+R L GR L + XXXXXXXXXX VA G++ E +++T D++ NFSNYSAFH RS++L + E G D+ L ELD T P DQS WWY+ FLL D AD E +LR E L EL+EVE C Sbjct: 102 DVAQEELVMSAEALKRQPKSYPAWYHRKWILDR---LESGRERTLQSEXXXXXXXXXXXXXXXXXXXXXRYVAHLAGVTPEENYEYTEDRLNANFSNYSAFHERSRILASLAEY-GEDKISTLQQELDFVQQITVTAPDDQSAWWYYRFLLAAVTDDAD--IPIEEKLRLLRQEVGRLNELVEVELEC 283
BLAST of mRNA_E-siliculosus-1a_F_contig10283.240.1 vs. uniprot
Match: UPI000C78249F (geranylgeranyl transferase type-2 subunit alpha-like n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C78249F) HSP 1 Score: 129 bits (325), Expect = 1.740e-31 Identity = 64/156 (41.03%), Postives = 92/156 (58.97%), Query Frame = 1 Query: 151 ELALSVDCIKRNPKSYPAWHHHKWALERGLDLLGGRSALARDLALCATFLELDXXXXXXXXXXXXVAERMGLSAREEFDFTTDKIKQNFSNYSAFHFRSKVLPRMVEEAGHDRWQLLSDELDLTHDAMFTEPADQSVWWYHHFLLTWADDGADSCF 618 EL L+ C+ NPKSY AWHH W LE ++ +R+LALC FL+LD VA++ G+ ++E +FT +KI++NFSNYSA+H+RSK+LP + + + + ELDL +A FT+PAD S W+YH +LL +G F Sbjct: 117 ELDLTQQCLIANPKSYGAWHHRTWCLEHMIN-----PDWSRELALCRKFLKLDERNFHCWDYRKWVADKAGVKPQQELEFTLEKIEENFSNYSAWHYRSKLLPLLNPDTSSIQEDQVHKELDLVQNAAFTDPADSSAWFYHTWLLGQESEGLKIVF 267
BLAST of mRNA_E-siliculosus-1a_F_contig10283.240.1 vs. uniprot
Match: A0A0M0JE27_9EUKA (Geranylgeranyl transferase type-2 subunit alpha n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JE27_9EUKA) HSP 1 Score: 125 bits (315), Expect = 9.280e-31 Identity = 72/189 (38.10%), Postives = 100/189 (52.91%), Query Frame = 1 Query: 151 ELALSVDCIKRNPKSYPAWHHHKWALERGLDLLGGRSALAR--DLALCATFLELDXXXXXXXXXXXXVAERMGLSAREEFDFTTDKIKQNFSNYSAFHFRSKVLPRMVEEAGHDR----WQLLSDELDLTHDAMFTEPADQSVWWYHHFLLTWADDGADSCFDSERYENVLRAEAATLGELIEVEGRCK 699 E AL+ +C+ NPKSYP W+H +W L L G +L L A L LD V G++A E FTT KI+ NFSNYSA+H+RSK+LP + AG + +L +EL+L +A FT P D S W+YH +L+ GA + +E ++RAE + EL+E+E CK Sbjct: 90 EFALTQECLGINPKSYPVWYHREWVL------LWGECEWQWPVELKLTAKLLALDDRNFHCWTYRRNVVRVAGVTAEAELAFTTTKIQANFSNYSAWHYRSKLLPAVHASAGAEGAAQLGAVLRNELELVRNAFFTAPEDSSAWFYHRWLIAQLAPGAAAALPPAEFEALVRAELQMVDELLELEPECK 272
BLAST of mRNA_E-siliculosus-1a_F_contig10283.240.1 vs. uniprot
Match: UPI000644DC6F (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644DC6F) HSP 1 Score: 124 bits (312), Expect = 9.580e-31 Identity = 69/189 (36.51%), Postives = 100/189 (52.91%), Query Frame = 1 Query: 133 KNIYEEELALSVDCIKRNPKSYPAWHHHKWALERGLDLLGGRSALARDLALCATFLELDXXXXXXXXXXXXVAERMGLSAREEFDFTTDKIKQNFSNYSAFHFRSKVLPRMVEEAGHDRWQLLSDELDLTHDAMFTEPADQSVWWYHHFLLTWADDGADSCFDSERYENVLRAEAATLGELIEVEGRCK 699 + +Y E+ +CI+R KSY W+H KW + + + R+L LC+ L+LD V E+ GL +E+ +TT KI+QNFSNYSA+H RS ++P M E ++ L +E +L +A+FTEP DQS W YH +L+ G Y+ V AE + ELIE+E CK Sbjct: 86 QTLYAAEMKFIEECIQRFTKSYWVWYHRKW-----ISVRQDKCDWERELKLCSKLLDLDLRNFHCWSYRRFVGEKSGLPLEKEYAYTTTKIEQNFSNYSAWHQRSALIPLMNTEP-QQLFEKLKEEFELVRNAVFTEPKDQSSWIYHKWLV-----GTMKAIPGCDYKEVFNAEVEAINELIEIEPDCK 263
BLAST of mRNA_E-siliculosus-1a_F_contig10283.240.1 vs. uniprot
Match: A0A7S4DKH2_HETAK (Geranylgeranyl transferase type-2 subunit alpha (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DKH2_HETAK) HSP 1 Score: 121 bits (303), Expect = 1.130e-30 Identity = 68/160 (42.50%), Postives = 87/160 (54.37%), Query Frame = 1 Query: 151 ELALSVDCIKRNPKSYPAWHHHKWALERGLDLLGGRSALARDLALCATFLELDXXXXXXXXXXXXVAERMGLSAREEFDFTTDKIKQNFSNYSAFHFRSKVLPRMVEEA-----------GHD-RWQLLSDELDLTHDAMFTEPADQSVWWYHHFLLTWA 594 EL L+ D I RNPKSYPAWH +W + LD L+++L LCA FL+ D + +MG + EE +F T KI +NFSNYSA+H+R+++LP + G D R LL ELD +FTEP DQSVWWY LL WA Sbjct: 32 ELQLTQDGIGRNPKSYPAWHQRQWLIIH-LD----SPDLSQELDLCALFLQRDGRNFHCWNYRQFIVNKMGRTPAEEMEFLTSKIDENFSNYSAWHYRARLLPGLAHSVAKGGAGGPSPGGEDPRVTLLRRELDHVEQIVFTEPDDQSVWWYLRHLLAWA 186
BLAST of mRNA_E-siliculosus-1a_F_contig10283.240.1 vs. uniprot
Match: D0N0T5_PHYIT (Geranylgeranyl transferase type-2 subunit alpha n=15 Tax=Phytophthora TaxID=4783 RepID=D0N0T5_PHYIT) HSP 1 Score: 123 bits (308), Expect = 5.380e-30 Identity = 70/183 (38.25%), Postives = 98/183 (53.55%), Query Frame = 1 Query: 151 ELALSVDCIKRNPKSYPAWHHHKWALERGLDLLGGRSALARDLALCATFLELDXXXXXXXXXXXXVAERMGLSAREEFDFTTDKIKQNFSNYSAFHFRSKVLPRMVEEAGHDRWQLLSDELDLTHDAMFTEPADQSVWWYHHFLLTWADDGADSCFDSERYENVLRAEAATLGELIEVEGRCK 699 EL L++D ++RNPKSY AW +W ++RGL L ++ LC L LD V + G+S E+ FTT KI+QNFSNYSA H RS LP + +L DE+ L A+FTEP DQS W+Y+ +LLT + +S +E L+++ L EL+E+E K Sbjct: 108 ELKLTLDALQRNPKSYSAWFQRQWIIDRGL------GDLKMEIGLCDKLLNLDERNFHCWNYRRHVCKLAGVSKAEQLAFTTQKIEQNFSNYSALHHRSITLPEPLSA------DVLFDEIGLVQQAVFTEPDDQSAWFYYRWLLTSMVELVES--SAEDASGFLKSQVQWLNELLEMESEAK 276
BLAST of mRNA_E-siliculosus-1a_F_contig10283.240.1 vs. uniprot
Match: A0A4Y2WSW9_ARAVE (Geranylgeranyl transferase type-2 subunit alpha (Fragment) n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2WSW9_ARAVE) HSP 1 Score: 117 bits (293), Expect = 1.490e-29 Identity = 62/147 (42.18%), Postives = 85/147 (57.82%), Query Frame = 1 Query: 151 ELALSVDCIKRNPKSYPAWHHHKWALERGLDLLGGRSALARDLALCATFLELDXXXXXXXXXXXXVAERMGLSAREEFDFTTDKIKQNFSNYSAFHFRSKVLPRMVEEA--GHDRWQLLSDELDLTHDAMFTEPADQSVWWYHHFLL 585 EL L+ +C+K NPKSY AWHH W +E R+L LC FL LD V+++ +S EE D++T I+ NFSNYSA+H+RS +LP + +A G + +L E DL +A FT+P DQSVW+YH +LL Sbjct: 17 ELDLTQNCLKVNPKSYSAWHHRFWTME-----FHPEGDWKRELKLCNFFLSLDERNFHCWDYRRLVSKKCNVSPEEELDYSTTLIETNFSNYSAWHYRSTLLPIVHYDASKGSIKEDVLLKEFDLIQNAAFTDPDDQSVWFYHRWLL 158 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10283.240.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10283.240.1 >prot_E-siliculosus-1a_F_contig10283.240.1 ID=prot_E-siliculosus-1a_F_contig10283.240.1|Name=mRNA_E-siliculosus-1a_F_contig10283.240.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=233bp AIRAQLSRIGDAHSRQGGSDGGDKAAEESSSGTLLSPSAQEQQKKNIYEEback to top mRNA from alignment at E-siliculosus-1a_F_contig10283:547..2430+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig10283.240.1 ID=mRNA_E-siliculosus-1a_F_contig10283.240.1|Name=mRNA_E-siliculosus-1a_F_contig10283.240.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1884bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10283:547..2430+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10283:547..2430+ >mRNA_E-siliculosus-1a_F_contig10283.240.1 ID=mRNA_E-siliculosus-1a_F_contig10283.240.1|Name=mRNA_E-siliculosus-1a_F_contig10283.240.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1398bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10283:547..2430+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |