mRNA_E-siliculosus-1a_F_contig10257.225.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10257.225.1 vs. uniprot
Match: D8LE94_ECTSI (Complex1_LYR_dom domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE94_ECTSI) HSP 1 Score: 154 bits (390), Expect = 8.710e-45 Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 2 Query: 2 SPKGQQLRLILRTEFKKNMGETDPVKIEALKGGAIRGLSNYLVHESGSNDPQLKKRMEAVKTHALADLKQRQQERDGKR 238
SPKGQQLRLILRTEFKKNMGETDPVKIEALKGGAIRGLSNYLVHESGSNDPQLKKRMEAVKTHALADLKQRQQERDGKR
Sbjct: 29 SPKGQQLRLILRTEFKKNMGETDPVKIEALKGGAIRGLSNYLVHESGSNDPQLKKRMEAVKTHALADLKQRQQERDGKR 107
BLAST of mRNA_E-siliculosus-1a_F_contig10257.225.1 vs. uniprot
Match: A0A835Z7F8_9STRA (Complex1_LYR_dom domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7F8_9STRA) HSP 1 Score: 70.9 bits (172), Expect = 2.910e-12 Identity = 34/75 (45.33%), Postives = 50/75 (66.67%), Query Frame = 2 Query: 2 SPKGQQLRLILRTEFKKNMGETDPVKIEALKGGAIRGLSNYLVHESGSNDPQLKKRMEAVKTHALADLKQRQQER 226
S KG +R ++ TEF+K++ ETDP ++ LK A+RGLSNY +HES S D +LK RME + A++ + Q+ R
Sbjct: 30 SAKGDAMRKMISTEFRKHIDETDPARVAILKAAAVRGLSNYFLHESASRDAKLKARMEDQRIAVQAEIGEEQRAR 104
BLAST of mRNA_E-siliculosus-1a_F_contig10257.225.1 vs. uniprot
Match: A0A7S1ZML8_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZML8_TRICV) HSP 1 Score: 67.4 bits (163), Expect = 1.430e-10 Identity = 31/68 (45.59%), Postives = 45/68 (66.18%), Query Frame = 2 Query: 2 SPKGQQLRLILRTEFKKNMGETDPVKIEALKGGAIRGLSNYLVHESGSNDPQLKKRMEAVKTHALADL 205
SPK LR ++++EF KN E DP KIE++K GAIR LSNY+++ESG+ D +L K M ++ +
Sbjct: 55 SPKAMALRAMVQSEFSKNRDEKDPAKIESMKAGAIRALSNYMLYESGAKDQKLGKAMNKFNQDTISGI 122
BLAST of mRNA_E-siliculosus-1a_F_contig10257.225.1 vs. uniprot
Match: R1E7M2_EMIHU (Complex1_LYR_dom domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1E7M2_EMIHU) HSP 1 Score: 61.2 bits (147), Expect = 3.300e-8 Identity = 26/46 (56.52%), Postives = 35/46 (76.09%), Query Frame = 2 Query: 2 SPKGQQLRLILRTEFKKNMGETDPVKIEALKGGAIRGLSNYLVHES 139
SPKG+ +R ++R +FK NMGETDP KI LK AI G+ NY++HE+
Sbjct: 71 SPKGEAMRSMIRQQFKSNMGETDPTKINELKMRAISGIQNYVIHEN 116
BLAST of mRNA_E-siliculosus-1a_F_contig10257.225.1 vs. uniprot
Match: A0A482SGE8_9ARCH (LYR motif-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SGE8_9ARCH) HSP 1 Score: 60.8 bits (146), Expect = 3.380e-8 Identity = 29/55 (52.73%), Postives = 39/55 (70.91%), Query Frame = 2 Query: 2 SPKGQQLRLILRTEFKKNMGETDPVKIEALKGGAIRGLSNYLVHESGSNDPQLKK 166
S KG+ +R +LR EF+KN DP KIE LK A+RGL+NYL+ ES + D +L+K
Sbjct: 51 SQKGENIRRVLRHEFRKNAKLEDPAKIEQLKSNAVRGLANYLMIESATKDTKLQK 105
BLAST of mRNA_E-siliculosus-1a_F_contig10257.225.1 vs. uniprot
Match: A0A7S3WS84_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3WS84_EMIHU) HSP 1 Score: 61.2 bits (147), Expect = 3.920e-8 Identity = 26/46 (56.52%), Postives = 35/46 (76.09%), Query Frame = 2 Query: 2 SPKGQQLRLILRTEFKKNMGETDPVKIEALKGGAIRGLSNYLVHES 139
SPKG+ +R ++R +FK NMGETDP KI LK AI G+ NY++HE+
Sbjct: 83 SPKGEAMRSMIRQQFKSNMGETDPTKINELKMRAISGIQNYVIHEN 128
BLAST of mRNA_E-siliculosus-1a_F_contig10257.225.1 vs. uniprot
Match: R1CQ33_EMIHU (Complex1_LYR_dom domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1CQ33_EMIHU) HSP 1 Score: 61.2 bits (147), Expect = 4.930e-8 Identity = 26/46 (56.52%), Postives = 35/46 (76.09%), Query Frame = 2 Query: 2 SPKGQQLRLILRTEFKKNMGETDPVKIEALKGGAIRGLSNYLVHES 139
SPKG+ +R ++R +FK NMGETDP KI LK AI G+ NY++HE+
Sbjct: 96 SPKGEAMRSMIRQQFKSNMGETDPTKINELKMRAISGIQNYVIHEN 141
BLAST of mRNA_E-siliculosus-1a_F_contig10257.225.1 vs. uniprot
Match: A0A024GHE4_9STRA (Phosphoribosylaminoimidazolesuccinocarboxamide synthase n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GHE4_9STRA) HSP 1 Score: 59.3 bits (142), Expect = 1.380e-6 Identity = 30/59 (50.85%), Postives = 39/59 (66.10%), Query Frame = 2 Query: 2 SPKGQQLRLILRTEFKKNMGETDPVKIEALKGGAIRGLSNYLVHESGSNDPQLKKRMEA 178
S KG ++ ++R EF K ETDP KIE LKG A+RGLSNYLV + S D +K M++
Sbjct: 62 SKKGLAIKELVRREFDKGKRETDPEKIEMLKGNAVRGLSNYLVMANASKDKGMKNAMKS 120
BLAST of mRNA_E-siliculosus-1a_F_contig10257.225.1 vs. uniprot
Match: A0A2I0VL77_9ASPA (Complex1_LYR_dom domain-containing protein n=3 Tax=Epidendroideae TaxID=158332 RepID=A0A2I0VL77_9ASPA) HSP 1 Score: 52.0 bits (123), Expect = 7.590e-6 Identity = 23/37 (62.16%), Postives = 30/37 (81.08%), Query Frame = 2 Query: 29 ILRTEFKKNMGETDPVKIEALKGGAIRGLSNYLVHES 139
++R +FKKNM ETDPVKI+ LK A RGL N+++HES
Sbjct: 1 MVRQQFKKNMHETDPVKIQKLKDDAARGLINHILHES 37
BLAST of mRNA_E-siliculosus-1a_F_contig10257.225.1 vs. uniprot
Match: A0A1Y1IKT5_KLENI (Complex1_LYR_dom domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IKT5_KLENI) HSP 1 Score: 50.1 bits (118), Expect = 9.370e-5 Identity = 24/40 (60.00%), Postives = 30/40 (75.00%), Query Frame = 2 Query: 20 LRLILRTEFKKNMGETDPVKIEALKGGAIRGLSNYLVHES 139
LR +R +FKKNM E DP KI+A K A+RGLSNY+V E+
Sbjct: 35 LREQVRLQFKKNMDERDPDKIQAQKEAAVRGLSNYMVFEA 74 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10257.225.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 10 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10257.225.1 >prot_E-siliculosus-1a_F_contig10257.225.1 ID=prot_E-siliculosus-1a_F_contig10257.225.1|Name=mRNA_E-siliculosus-1a_F_contig10257.225.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=162bp EPQGAAAPSYPENRVQEEHGRDRPSQDRSAQGRRNTRIVKLLGARIGQQRback to top mRNA from alignment at E-siliculosus-1a_F_contig10257:669..2112+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig10257.225.1 ID=mRNA_E-siliculosus-1a_F_contig10257.225.1|Name=mRNA_E-siliculosus-1a_F_contig10257.225.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1444bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10257:669..2112+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10257:669..2112+ >mRNA_E-siliculosus-1a_F_contig10257.225.1 ID=mRNA_E-siliculosus-1a_F_contig10257.225.1|Name=mRNA_E-siliculosus-1a_F_contig10257.225.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=972bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10257:669..2112+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |