mRNA_E-siliculosus-1a_F_contig10255.224.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10255.224.1 vs. uniprot
Match: A0A6H5KWK2_9PHAE (Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWK2_9PHAE) HSP 1 Score: 379 bits (973), Expect = 1.910e-126 Identity = 198/239 (82.85%), Postives = 207/239 (86.61%), Query Frame = 2 Query: 77 MAFEWAEADIPKLLMGVIFCALIWPQPMQVSAFLRQSLNRATAQERERTAALQALHERQETETIREGEHATAAGRRTGATTATASTAARAEKAILPQPQSRGTKGAPSSRSPXXXXXXEILPLTTLGELLSYEGPGWGQGFAPARPLPFVAAPFPPLKSRLLVCHDLAGGYGQDRLVQGGGYDRPYRAYDWGLIDIFVYFSHDLVTIPTAGWIDVAHRHGTRVLGTFITEWDKGYDVCK 793 M FEWA+AD+P LLMGVIFCAL+WPQ MQVSAFLRQS+NRATAQERERTAALQAL +R+E ET REGEHATAAGRRTGATT AILPQ XXXXXXEILPLT+LGELLSYEGPGWGQGFAPARPLPFVAAPFPPLKSRLLVCHDLAGGYGQDRLVQGGGYDRPYRAYDWGLIDIFVYFSH+LVTIPTAGWIDVAHRHGTRVLGTFITEWDKGYDVC+ Sbjct: 1 MVFEWAKADVPTLLMGVIFCALMWPQLMQVSAFLRQSVNRATAQERERTAALQALRKRKEVETQREGEHATAAGRRTGATTXXXXXXXXXXXAILPQXXXXXXXXXXXXXXXXXXXXXEILPLTSLGELLSYEGPGWGQGFAPARPLPFVAAPFPPLKSRLLVCHDLAGGYGQDRLVQGGGYDRPYRAYDWGLIDIFVYFSHNLVTIPTAGWIDVAHRHGTRVLGTFITEWDKGYDVCE 239
BLAST of mRNA_E-siliculosus-1a_F_contig10255.224.1 vs. uniprot
Match: D8LQD7_ECTSI (Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQD7_ECTSI) HSP 1 Score: 387 bits (995), Expect = 1.270e-123 Identity = 206/240 (85.83%), Postives = 208/240 (86.67%), Query Frame = 2 Query: 77 MAFEWAEADIPKLLMGVIFCALIWPQPMQVSAFLRQSLNRATAQERERTAALQALHERQETETIREGEHATAAGRRTGATTATASTAARAEKAI-LPQPQSRGTKGAPSSRSPXXXXXXEILPLTTLGELLSYEGPGWGQGFAPARPLPFVAAPFPPLKSRLLVCHDLAGGYGQDRLVQGGGYDRPYRAYDWGLIDIFVYFSHDLVTIPTAGWIDVAHRHGTRVLGTFITEWDKGYDVCK 793 M FEWA+ADIP LLMGVIFCALIWPQ MQVSAFLRQSL RATAQERERT LQALHERQE ET REGEHATAAGRRTGATTA EKAI LPQ XXXXXXEILPLTTLGELLSYEGPGWGQGFAPARPLPFVAAPFPPLKSRLLVCHDLAGGYGQDRLVQGGGYDRPYRAYDWGLIDIFVYFSHDLVTIPTAGWIDVAHRHGTRVLGTFITEWDKGYDVC+ Sbjct: 1 MTFEWAKADIPNLLMGVIFCALIWPQLMQVSAFLRQSLYRATAQERERTVTLQALHERQEAETQREGEHATAAGRRTGATTAXXXXXXXXEKAIILPQXXXXXXXXXXXXXXXXXXXXXEILPLTTLGELLSYEGPGWGQGFAPARPLPFVAAPFPPLKSRLLVCHDLAGGYGQDRLVQGGGYDRPYRAYDWGLIDIFVYFSHDLVTIPTAGWIDVAHRHGTRVLGTFITEWDKGYDVCE 240
BLAST of mRNA_E-siliculosus-1a_F_contig10255.224.1 vs. uniprot
Match: A0A843VWT7_COLES (Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843VWT7_COLES) HSP 1 Score: 125 bits (313), Expect = 4.540e-29 Identity = 59/115 (51.30%), Postives = 74/115 (64.35%), Query Frame = 2 Query: 515 LPFVAAPFPPLKSRLLVCHDLAGGYGQDRLVQGGGYDRPYRAYDWGLIDIFVYFSHDLVTIPTAGWIDVAHRHGTRVLGTFITEWDKGYDVCK*FSFKRRIA-MFAQELQQIPSV 856 LP A P + RLLVCHD+AGGY DR VQGG Y + W L+D+FVYF+HDLVT+P W + AH HG RVLGTFITEWDKG D+CK A ++A+ L ++ + Sbjct: 80 LPAGAGAGLPPRRRLLVCHDMAGGYQDDRWVQGGANPDAYAIWHWHLMDVFVYFAHDLVTLPPPCWTNAAHSHGVRVLGTFITEWDKGKDICKTLLASNEFARLYAERLAELAAA 194
BLAST of mRNA_E-siliculosus-1a_F_contig10255.224.1 vs. uniprot
Match: A0A452YWH8_AEGTS (Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A452YWH8_AEGTS) HSP 1 Score: 121 bits (303), Expect = 1.600e-28 Identity = 57/116 (49.14%), Postives = 74/116 (63.79%), Query Frame = 2 Query: 512 PLPFVAAPFPPLKSRLLVCHDLAGGYGQDRLVQGGGYDRPYRAYDWGLIDIFVYFSHDLVTIPTAGWIDVAHRHGTRVLGTFITEWDKGYDVCK*-FSFKRRIAMFAQELQQIPSV 856 PLP AP PP + RLLVCHD GGY D QGG Y + W L+D+FVYFSH LVT+P W + AH HG +VLGTFITEWDKG ++C+ F+ + M+A+ L ++ + Sbjct: 69 PLPSPGAPLPP-RRRLLVCHDFQGGYRDDAAPQGGANPDAYALWHWHLVDVFVYFSHYLVTLPPPCWTNAAHLHGVKVLGTFITEWDKGAEICREMFATQDSAQMYAERLAELAAA 183
BLAST of mRNA_E-siliculosus-1a_F_contig10255.224.1 vs. uniprot
Match: A0A7I8K5M0_SPIIN (Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase n=1 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8K5M0_SPIIN) HSP 1 Score: 125 bits (313), Expect = 2.330e-28 Identity = 61/113 (53.98%), Postives = 76/113 (67.26%), Query Frame = 2 Query: 512 PLPFVAAPFPPLKSRLLVCHDLAGGYGQDRLVQGGGYDRPYRAYDWGLIDIFVYFSHDLVTIPTAGWIDVAHRHGTRVLGTFITEWDKGYDVC-K*FSFKRRIAMFAQELQQI 847 PL AA P + RLLVCHD+AGGYG D+ VQGG Y + W L+D+FVYFSH+LVT+P W++ AH HG +VLGTFITEWD+G VC K S K M+A+ L +I Sbjct: 43 PLSTAAAGGLPPRRRLLVCHDMAGGYGDDKWVQGGSNPDAYAIWHWHLMDVFVYFSHNLVTLPPPCWMNAAHTHGVKVLGTFITEWDEGRAVCRKLLSSKDSARMYAERLVEI 155
BLAST of mRNA_E-siliculosus-1a_F_contig10255.224.1 vs. uniprot
Match: A0A444X1Z7_ARAHY (Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase n=2 Tax=Arachis hypogaea TaxID=3818 RepID=A0A444X1Z7_ARAHY) HSP 1 Score: 117 bits (292), Expect = 4.380e-28 Identity = 55/101 (54.46%), Postives = 68/101 (67.33%), Query Frame = 2 Query: 548 KSRLLVCHDLAGGYGQDRLVQGGGYDRPYRAYDWGLIDIFVYFSHDLVTIPTAGWIDVAHRHGTRVLGTFITEWDKGYDVCK*F-SFKRRIAMFAQELQQI 847 + RLLVCHD+AGGY D+ VQGG Y + W LID+FVYFSH+LVTIP W + AHRHG +VLGTFITEWD+G C S K M+A+ L ++ Sbjct: 73 RRRLLVCHDMAGGYLDDKWVQGGTNPDAYAIWHWHLIDVFVYFSHNLVTIPPPCWTNTAHRHGVKVLGTFITEWDEGRAACDVLLSTKESAQMYAERLVEL 173
BLAST of mRNA_E-siliculosus-1a_F_contig10255.224.1 vs. uniprot
Match: A0A834WGT6_9FABA (Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase n=1 Tax=Senna tora TaxID=362788 RepID=A0A834WGT6_9FABA) HSP 1 Score: 124 bits (311), Expect = 4.510e-28 Identity = 68/170 (40.00%), Postives = 93/170 (54.71%), Query Frame = 2 Query: 365 QPQSRGTKGAPSSRSPXXXXXXEILPLTTLGELLSYEGPGWGQGF-----APARPLPFVAAPFPPLKSRLLVCHDLAGGYGQDRLVQGGGYDRPYRAYDWGLIDIFVYFSHDLVTIPTAGWIDVAHRHGTRVLGTFITEWDKGYDVCK*F-SFKRRIAMFAQELQQIPSV 856 +PQS+ + P P P+ TL EL E + F + P+ +P P + R+LVCHD+AGGY D+ +QGG Y + W LID+FVYFSH+LVT+P GW + HRHG +VLGTFITEWD+G VC S K M+A+ L ++ + Sbjct: 5 EPQSQQSASDPPEFDPTQPSVPISYPIKTLHEL---ESRSYFDSFHYPFNKASVPIQSGGSPSLPNRRRMLVCHDMAGGYTDDKWIQGGTNADAYAIWHWHLIDVFVYFSHNLVTLPPPGWTNTGHRHGVKVLGTFITEWDEGRAVCNTMLSTKESSQMYAERLAELAAA 171
BLAST of mRNA_E-siliculosus-1a_F_contig10255.224.1 vs. uniprot
Match: A0A1Y1HJR8_KLENI (Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HJR8_KLENI) HSP 1 Score: 124 bits (310), Expect = 7.130e-28 Identity = 53/82 (64.63%), Postives = 61/82 (74.39%), Query Frame = 2 Query: 548 KSRLLVCHDLAGGYGQDRLVQGGGYDRPYRAYDWGLIDIFVYFSHDLVTIPTAGWIDVAHRHGTRVLGTFITEWDKGYDVCK 793 + RLLVCHDL GGY D+L+QGG YR + W LID+FVYFSH LVTIP AGW D AHRH +VLGTFITEWD G +C+ Sbjct: 77 RPRLLVCHDLQGGYEDDKLLQGGSNSNAYRIWHWRLIDVFVYFSHHLVTIPPAGWTDAAHRHDVKVLGTFITEWDAGAAICR 158
BLAST of mRNA_E-siliculosus-1a_F_contig10255.224.1 vs. uniprot
Match: L5MJW7_MYODS (Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase n=2 Tax=Myotis davidii TaxID=225400 RepID=L5MJW7_MYODS) HSP 1 Score: 123 bits (309), Expect = 8.660e-28 Identity = 63/120 (52.50%), Postives = 76/120 (63.33%), Query Frame = 2 Query: 443 LTTLGELLSYEGPGWGQGFAPAR-PLPFVAAPFPPLKSRLLVCHDLAGGYGQDRLVQGGGYDRPYRAYDWGLIDIFVYFSHDLVTIPTAGWIDVAHRHGTRVLGTFITEWDKGYDVCK*F 799 L++L ELL++ PG GF+ A P P + R L+CHD+ GGY DR +QG G PY Y W IDIFVYFSH LVTIP GW + AHRHG RVLGTFITEW +G +C+ F Sbjct: 70 LSSLEELLAWT-PGAEDGFSVALVPAQDRQPPLSSRRPRTLLCHDMMGGYLDDRFIQGSGVRSPYTFYHWQYIDIFVYFSHHLVTIPPVGWTNAAHRHGVRVLGTFITEWKEGGQLCEAF 188
BLAST of mRNA_E-siliculosus-1a_F_contig10255.224.1 vs. uniprot
Match: A0A6A4MAZ7_9ERIC (Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase (Fragment) n=1 Tax=Rhododendron williamsianum TaxID=262921 RepID=A0A6A4MAZ7_9ERIC) HSP 1 Score: 116 bits (290), Expect = 1.230e-27 Identity = 52/104 (50.00%), Postives = 69/104 (66.35%), Query Frame = 2 Query: 548 KSRLLVCHDLAGGYGQDRLVQGGGYDRPYRAYDWGLIDIFVYFSHDLVTIPTAGWIDVAHRHGTRVLGTFITEWDKG-YDVCK*FSFKRRIAMFAQELQQIPSV 856 + R+LVCHD+AGGY D+ VQGG Y + W L+D+FVYFSHDLVT+P W + AH+HG +VLGTFITEWD+G K + K M+A+ L ++ S Sbjct: 67 RPRMLVCHDMAGGYTDDKWVQGGSNPEAYAIWHWYLMDVFVYFSHDLVTLPPPCWTNAAHKHGVKVLGTFITEWDEGRVHANKLLATKESARMYAERLTELASA 170 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10255.224.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10255.224.1 >prot_E-siliculosus-1a_F_contig10255.224.1 ID=prot_E-siliculosus-1a_F_contig10255.224.1|Name=mRNA_E-siliculosus-1a_F_contig10255.224.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=240bp MAFEWAEADIPKLLMGVIFCALIWPQPMQVSAFLRQSLNRATAQERERTAback to top mRNA from alignment at E-siliculosus-1a_F_contig10255:747..2237- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig10255.224.1 ID=mRNA_E-siliculosus-1a_F_contig10255.224.1|Name=mRNA_E-siliculosus-1a_F_contig10255.224.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1491bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10255:747..2237- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10255:747..2237- >mRNA_E-siliculosus-1a_F_contig10255.224.1 ID=mRNA_E-siliculosus-1a_F_contig10255.224.1|Name=mRNA_E-siliculosus-1a_F_contig10255.224.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1440bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10255:747..2237- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |