mRNA_E-siliculosus-1a_F_contig1025.220.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1025.220.1 vs. uniprot
Match: A0A6H5K804_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K804_9PHAE) HSP 1 Score: 1322 bits (3421), Expect = 0.000e+0 Identity = 1144/1430 (80.00%), Postives = 1163/1430 (81.33%), Query Frame = 1 Query: 409 MPELYSPGGSSVFSDGSCSTAPYGRGGSSSGWCGSSWDGSDHESGGQGSADYEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASSGCTSKRAKLTPRSLSRLGDEPAVNGSGGVGSSGSAMDIGDGSTSDGRARARDGFLKGRGMSLDGGGGGRRGHFEPSMSHSTEEWRAMSKAARVLGVDSLEERDVEDQRRASSVKAAQILGVGVENVAELQQNANAARDRHWAPPRSSASKAARMLGVSDXXXXXXXXXXXXXXATTNKDRSLARSRSVSSRGARGSSXSKAARGQRTISSLIRALEINGGTATXXXXXXXXXXXXXXXVGDNGSEDLHQIKKGLGKQQETGSNRSTRATESCSS--------------------------------------------------PELSDDSQLAGLQTPGASSSSETGPGGLRGFSRHNRDDDMDIETPPSQPRSAPVASLRKASAPLLAPYTPSLTPASSAGAAMTASPXXXXXXXXXXXXXXXXXXXXXXXXXXQHQQ--VARHASDFALNEGIEWRSPVSAVAEGKNGNGAGSMYADRGGGRVARVSEVLDDSPLVASSGNGGQGWARDWSAAAAGTAAITAQQHXXXXXXXXXX------SSSAPVDQQQRASRTASATGPVDIRLPDPVLSWVEQRAAVGSVTMAAGCKESRPEVWPEHKQVSPVVPQLGGGGGRELPLPSMLASAAAAEEKMGGRWAGGQGSQSRGNLPEYKYESPDVAPRSTVGGGVGEQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQFHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMAPSSSAEGFSANGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSGDVASGYGYPLTTVGGSDSSGESDSACDTFPDQMDEGEGPAASSAYEALAAMIPVINPMGIPRHQHAAGGPAATAATAAAAGQPHVKLEVVQGRGGAXXXXXXXXXXXXXPXXXHXXXXXXXXXXX--VEVPTKGDVWGENVSRFGGGDDRSSAVKGNGRKVGGVGGFGSGSKVPQGSGXXXXXXXXXXXXXXXXXXXXXISTRKQLEVATRPREKGRFVKRAPAFLPISAFKPPSDRSEADAAAEXXXXXXXXXXXXXXXXXXXXXXXXXQRGLNKANSXXXXXXXXXXXXXXXXXXXXPPAAVGRGDKAKDHAASWSPVTGGGEGATERPSSXXXXXXXXXXXXXXXXXXXXXXXXXXXRGRGDRRLSSPPSRATPNDIWSEDDNGSAMGDGGSFSXXXXXXXXXXXXXS---------HACRDASVSSDCGSEKCGSETGGDLKGMAFLPPSPMDRNSPGGGPGLSSAAWDSPSPRRSTGGGGFSGG 4491
MPELYSPGGSSVFSDGSCSTAPYGRGGSSSGWCGSSWDGSDHESGGQGS DYEAAXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXX ASSGCTSKRAKLT RSLSRLGDEPAVN SG VGSS ++DIG GSTSDGRARARDGFLKGRGMSLDGGGGGRRGHFE S SHSTEEWRAMSKAARVLGVDSLEERDVEDQRRASSVKAAQILGVGVENVAELQQNANAARDRHWAPPRS ASKAARMLGVSDXXXXXXXXXXXXXX X KA RGQ TISSLIRALEINGGTAT XXX VGDN SEDLHQIKKGLGKQQETGSNRSTRATESCSS ELSDDSQLAGLQTPGAS SSETGPGGLRGFSRH RDDDMDIETPPSQPRSAPVASLRKASAPLLAPYTPSLTPASSAGAA+TAS XXXXXXXXXXXXXXXXXXXXXXXXXX VARHASDFALNEG EWRSPVSAVAEGKNG A SM AD+GGG VARVSE+LD+ PLVASSGNGGQGWARDWSAAA GT AITAQQHXXXXXXXXXX SSSAPVD QQR SRTASA GPVD RLPDPV SW EQRAAVG+V AA CKESRPEVWPEHKQVSPVVPQLGGGG RELPLPSM ASAAAAEEKMGGRW+GGQGSQ RG+L EYKYESPD+A RSTVGGGV EQQ XXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX + XXXXXXXXXXXXXXXXXXXXXXXXXX AEGFS N XXXXXXXXXXXXXXXXXXXXXXXXXXX GSGDVASGYGYPLTTVGGSDSSGESDSA DTF DQMDEG+GPAASSAYEALAAMIPV+NPMGIPRHQ AAGGPAATAA A GQ HVKLEV+QGRG A XXXXXXXXXXXX XXX XXXXXXXXXXX VEVPTKGDVWGENVSR GGGDDRSS VKG+GRK G VGG G GSKVPQGSG XXXXXXX ISTRKQLEVATRPREKGRFVKRAPAFLPISAFKPPSDRSEADAAAEXXXXXXXXXXXXXXXXXXXXXXXX QRGLNKA + XXXXXXXX PPAAVGRGDKAK+HAASWSPV G XXXXXXXXXXXXXXXXXXXXXXXXXXXRGRGDRRLSSPPSRA PNDIWSEDD+GSAMGDGGSFS XXXXXXXXXXX HACRDASVSSDCGSEK +GGDLKGMAFLPPSPMDRNSPGGGPGLSSAAWDSPSPRRSTGGGGFSGG
Sbjct: 1 MPELYSPGGSSVFSDGSCSTAPYGRGGSSSGWCGSSWDGSDHESGGQGSTDYEAAXXXXXXXXXXXXXXXXMGHVPLSSXXXXXXXXXXXXXXXXXXXXXXX-ASSGCTSKRAKLTSRSLSRLGDEPAVNRSGVVGSSSGSIDIGHGSTSDGRARARDGFLKGRGMSLDGGGGGRRGHFEQSSSHSTEEWRAMSKAARVLGVDSLEERDVEDQRRASSVKAAQILGVGVENVAELQQNANAARDRHWAPPRSGASKAARMLGVSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKATRGQGTISSLIRALEINGGTATGSTSQTGSSDXXXSSVGDNASEDLHQIKKGLGKQQETGSNRSTRATESCSSVSECAHTDTDGVSSVDGGSSARGSYDYSPVEGPQQQKQQQQHTRRASVSPAELSDDSQLAGLQTPGASCSSETGPGGLRGFSRHTRDDDMDIETPPSQPRSAPVASLRKASAPLLAPYTPSLTPASSAGAAVTASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVARHASDFALNEGFEWRSPVSAVAEGKNG--ASSMSADKGGGHVARVSEILDEPPLVASSGNGGQGWARDWSAAADGTVAITAQQHXXXXXXXXXXXXXXXRSSSAPVD-QQRTSRTASAMGPVDFRLPDPVSSWAEQRAAVGAVNTAADCKESRPEVWPEHKQVSPVVPQLGGGG-RELPLPSMRASAAAAEEKMGGRWSGGQGSQQRGSLAEYKYESPDLAQRSTVGGGVEEQQHXXXXXXXXXXXXXXXXXXXXXXQQRHHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPQPVGLVSSGSAGVYPYPHPQFHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEGFSTN-XXXXXXXXXXXXXXXXXXXXXXXXXXXXLVSGGSGDVASGYGYPLTTVGGSDSSGESDSAYDTFADQMDEGDGPAASSAYEALAAMIPVVNPMGIPRHQQAAGGPAATAA---AEGQQHVKLEVIQGRGCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEVPTKGDVWGENVSRLGGGDDRSSNVKGHGRKAGVVGGCGRGSKVPQGSGGGVDDVGRSTSAXXXXXXX--ISTRKQLEVATRPREKGRFVKRAPAFLPISAFKPPSDRSEADAAAEXXXXXXXXXXXXXXXXXXXXXXXXIQRGLNKAKASXXXXXXXXMML--------PPAAVGRGDKAKEHAASWSPVIGXXXXXXXX-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGRGDRRLSSPPSRAAPNDIWSEDDSGSAMGDGGSFSDAXXXXXXXXXXXXXXXXXXXXXHACRDASVSSDCGSEKXXXXSGGDLKGMAFLPPSPMDRNSPGGGPGLSSAAWDSPSPRRSTGGGGFSGG 1410
BLAST of mRNA_E-siliculosus-1a_F_contig1025.220.1 vs. uniprot
Match: D7G2Y0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Y0_ECTSI) HSP 1 Score: 1184 bits (3063), Expect = 0.000e+0 Identity = 954/1374 (69.43%), Postives = 966/1374 (70.31%), Query Frame = 1 Query: 406 MMPELYSPGGSSVFSDGSCSTAPYGRGGSSSGWCGSSWDGSDHESGGQGSADYEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-ASSGCTSKRAKLTPRSLSRLGDEPAVNGSGG--VGSSGSAMDIGDGSTSDGRARARDGFLKGRGMSLDGGGGGRRGHFEPSMSHSTEEWRAMSKAARVLGVDSLEERDVEDQRRASSVKAAQILGVGVENVAELQQNANAARDRHWAPPRSSASKAARMLGVSDXXXXXXXXXXXXXXATTNKDRSLARSRSVSSRGARGSSXSKAARGQRTISSLIRALEINGGTATXXXXXXXXXXXXXXXVGDNGSEDLHQIKKGLGKQQETGSNRSTRATESCSSPELSDDSQLAGLQTPGASSSSETGPGGLRGFSRHNRDDDMDIETPPSQPRSAPVASLRKASAPLLAPYTPSLTPASSAGAAMTASPXXXXXXXXXXXXXXXXXXXXXXXXXXQHQQ---------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 4491
MMPELYSPGGSSVFSDGSCSTAPYGRGGSSSGWCGSSWDGSDHESGGQGSADYEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ASSGCTSKRAKLT RSL+RLGDEPAVNGSG V KGRGMSLDGGGGGRRGHFE SMSHSTEEWRAMSKAARVLGVDSLEERDVEDQRRASSVKAAQILGVGVENVAELQQNANAARDRHWAPPRSSASKAARMLGVSDXXXXXXXXXXXXXX X KA RGQ TISSLIRALEINGGTAT VGDNGSEDLHQIKKGLGKQQETGSNRSTRATESCSSPELSDDSQLAGLQTPGASSSSE GPGGLRGFSRHNRDDDMDIETPPSQPRSAPVASLRKASAPLLAPYTPSLTPASSAGAA+TA XXXXXXXXXXXX Q QQ VARHASDFALNEG+EWRSPVSAVAE KNG AGSM A++GGGRVARVSEVLDDSPLVASSGNGGQGW RDWSAAAAGTAAITA H XXXXXXXX SSSAP+D QQRASRTASA GPVD RLPDPV SW EQRA+VG+V AAGCKESRPEVWPEHKQVSPVVPQL GG RELPLPSMLASAAAAEEKMGG GSGDVASGYGYPLTTVGGSDSSGESDSACDTFPDQMDEGEGPAASSAYEALAAMIPVINPMGIPRHQH AGGPAATAA AAGQ HVKLEVVQG XXXXXXXXXXXXX XXX XXXXXXXXXXXVEVPTKGDVWGENVSRFGGGDDRSSA+KGNGRKVGGVGG GSG+KVPQGSG XXXXXXXXXXXXXXXXXX IST KQ EVATRPREKGRFVKRAPAFLPISAFKPPSDRSEADAAAEXXXXXXXXXXXXXXXXXXXXXXXXXQRGLNKANSXXXXXXXXXXXXXXXXXX PPAAVGRGDKAK+HA SWSPVTGGG G + XXXXXXXXXXSHACRDASVSSDCGSEKCGSE GGDLKGMAFLPPSPMDRNSPGGGPGLSSAAWDSPSPRRS GGGGFSGG
Sbjct: 1 MMPELYSPGGSSVFSDGSCSTAPYGRGGSSSGWCGSSWDGSDHESGGQGSADYEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASSGCTSKRAKLTSRSLTRLGDEPAVNGSGVGVVXXXXXXXXXXXXXXXXXXXXXXXXXXKGRGMSLDGGGGGRRGHFEQSMSHSTEEWRAMSKAARVLGVDSLEERDVEDQRRASSVKAAQILGVGVENVAELQQNANAARDRHWAPPRSSASKAARMLGVSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKATRGQGTISSLIRALEINGGTATGSTSQTGSSDNGSSSVGDNGSEDLHQIKKGLGKQQETGSNRSTRATESCSSPELSDDSQLAGLQTPGASSSSEAGPGGLRGFSRHNRDDDMDIETPPSQPRSAPVASLRKASAPLLAPYTPSLTPASSAGAAVTAX-------XXXXXXXXXXXXGSPSIPTPQRQQHXXXXXXXXVARHASDFALNEGVEWRSPVSAVAERKNG--AGSMSAEKGGGRVARVSEVLDDSPLVASSGNGGQGWPRDWSAAAAGTAAITAPHHPXXXXXXXXRSSSAPMD-QQRASRTASAMGPVDFRLPDPVPSWAEQRASVGAVNTAAGCKESRPEVWPEHKQVSPVVPQLVRGG-RELPLPSMLASAAAAEEKMGGS----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGSGDVASGYGYPLTTVGGSDSSGESDSACDTFPDQMDEGEGPAASSAYEALAAMIPVINPMGIPRHQHGAGGPAATAA---AAGQQHVKLEVVQGX---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEVPTKGDVWGENVSRFGGGDDRSSALKGNGRKVGGVGGCGSGAKVPQGSGGXXXXXXXXXXXXXXXXXX--ISTPKQREVATRPREKGRFVKRAPAFLPISAFKPPSDRSEADAAAEXXXXXXXXXXXXXXXXXXXXXXXXXQRGLNKANSXXXXXXXXXXXXXXXXXXMLPPAAVGRGDKAKEHAGSWSPVTGGG---------------------------------------------------------------------GEGNFAGXXXXXXXXXXSHACRDASVSSDCGSEKCGSEGGGDLKGMAFLPPSPMDRNSPGGGPGLSSAAWDSPSPRRSNGGGGFSGG 1096 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1025.220.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1025.220.1 >prot_E-siliculosus-1a_F_contig1025.220.1 ID=prot_E-siliculosus-1a_F_contig1025.220.1|Name=mRNA_E-siliculosus-1a_F_contig1025.220.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=1525bp LKFAVTPAPPVPLFLPCLEAGAAATEGKGSSGGGACVPDHVVPAVALQRLback to top mRNA from alignment at E-siliculosus-1a_F_contig1025:2271..9627- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1025.220.1 ID=mRNA_E-siliculosus-1a_F_contig1025.220.1|Name=mRNA_E-siliculosus-1a_F_contig1025.220.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=7357bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1025:2271..9627- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1025:2271..9627- >mRNA_E-siliculosus-1a_F_contig1025.220.1 ID=mRNA_E-siliculosus-1a_F_contig1025.220.1|Name=mRNA_E-siliculosus-1a_F_contig1025.220.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=9150bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1025:2271..9627- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |