mRNA_E-siliculosus-1a_F_contig10249.219.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10249.219.1 vs. uniprot
Match: D7FZ17_ECTSI (Domain repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ17_ECTSI) HSP 1 Score: 490 bits (1261), Expect = 4.560e-170 Identity = 241/247 (97.57%), Postives = 243/247 (98.38%), Query Frame = 1 Query: 1 GRNDWGQLGKGDFLDRGDDPTTMGNNLTAVDLGTAPSGNGTAVAVAITTGQQFTCVLVEGGGVKCFGRNDEGQCGRGNLDTNVGSNGLEDMGDNLPYVDLGAGVEAISVSSGTASTCAALLGGGVKCWGGNSYGGLGVGDSYNVGDEEDDMGDNVQEVDLGTGETGYYVAYGLRHACAILMGGNVKCWGDNRSGQLGLGHVDTIGDDPSEMGDDLPYVDLGAGNTATSLSLGESHTCAILGDGSTRC 741 GRNDWGQLGKGDFLDRGDDP TMGNNLTAVDLGTAPSGNGTAVAVAITTGQQFTCVLVEGGGVKCFGRNDEGQCGRGNLDTNVGSNGLEDMGDNLPYV+LG GVE ISVSSGTASTCAALLGGGVKCWGGNSYGGLGVGDSYNVGDEEDDMGDNVQEVDLGTGETGYYVAYGLRHACAILMGG+VKCWGDNRSGQLGLGHVDTIGDDP EMGDDLPYVDLGAGNTATSLSLGESHTCAILGDGSTRC Sbjct: 112 GRNDWGQLGKGDFLDRGDDPATMGNNLTAVDLGTAPSGNGTAVAVAITTGQQFTCVLVEGGGVKCFGRNDEGQCGRGNLDTNVGSNGLEDMGDNLPYVNLGTGVEMISVSSGTASTCAALLGGGVKCWGGNSYGGLGVGDSYNVGDEEDDMGDNVQEVDLGTGETGYYVAYGLRHACAILMGGSVKCWGDNRSGQLGLGHVDTIGDDPFEMGDDLPYVDLGAGNTATSLSLGESHTCAILGDGSTRC 358
BLAST of mRNA_E-siliculosus-1a_F_contig10249.219.1 vs. uniprot
Match: A0A6H5L5B3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5B3_9PHAE) HSP 1 Score: 496 bits (1276), Expect = 6.260e-169 Identity = 243/247 (98.38%), Postives = 246/247 (99.60%), Query Frame = 1 Query: 1 GRNDWGQLGKGDFLDRGDDPTTMGNNLTAVDLGTAPSGNGTAVAVAITTGQQFTCVLVEGGGVKCFGRNDEGQCGRGNLDTNVGSNGLEDMGDNLPYVDLGAGVEAISVSSGTASTCAALLGGGVKCWGGNSYGGLGVGDSYNVGDEEDDMGDNVQEVDLGTGETGYYVAYGLRHACAILMGGNVKCWGDNRSGQLGLGHVDTIGDDPSEMGDDLPYVDLGAGNTATSLSLGESHTCAILGDGSTRC 741 GRNDWGQLGKGDFLDRGDDP TMGNNLTAVDLGTAPSGNGTAVAVAITTGQQFTCVLVEGGGVKCFGRNDEGQCGRGNLDTNVGSNGLEDMGDNLPYVDLGAGV+AISVSSGTASTCAALLGGGVKCWGGNSYGGLGVGDSYNVGDEEDDMGDN+QEVDLGTGETGYYVAYGLRHACAILMGGNVKCWGDNRSGQLGLGHVDTIGDDPSEMGDDLPYVDLGAGNTATSLSLGESH+CAILGDGSTRC Sbjct: 150 GRNDWGQLGKGDFLDRGDDPATMGNNLTAVDLGTAPSGNGTAVAVAITTGQQFTCVLVEGGGVKCFGRNDEGQCGRGNLDTNVGSNGLEDMGDNLPYVDLGAGVQAISVSSGTASTCAALLGGGVKCWGGNSYGGLGVGDSYNVGDEEDDMGDNLQEVDLGTGETGYYVAYGLRHACAILMGGNVKCWGDNRSGQLGLGHVDTIGDDPSEMGDDLPYVDLGAGNTATSLSLGESHSCAILGDGSTRC 396
BLAST of mRNA_E-siliculosus-1a_F_contig10249.219.1 vs. uniprot
Match: A0A382THL9_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382THL9_9ZZZZ) HSP 1 Score: 222 bits (566), Expect = 6.190e-69 Identity = 124/242 (51.24%), Postives = 155/242 (64.05%), Query Frame = 1 Query: 16 GQLGKGDFLDRGDDPTTMGNNLTAVDLGTAPSGNGTAVAVAITTGQQFTCVLVEGGGVKCFGRNDEGQCGRGNLDTNVGSNGLEDMGDNLPYVDLGAGVEAISVSSGTASTCAALLGGGVKCWGGNSYGGLGVGDSYNVGDEEDDMGDNVQEVDLGTGETGYYVAYGLRHACAILMGGNVKCWGDNRSGQLGLGHVDTIGDDPSEMGDDLPYVDLGAGNTATSLSLGESHTCAILGDGSTRC 741 GQLG+G GD P MG+NL AVDLGT + A AI TG+ TC L+ G VKC+G N GQ G+G+ + G G +MGDNL VDLG G A ++S GT CA L G VKCWG N+ G LG G + +GD++ +MGDN+ VDLGTG+T +A G + CA L G +KCWG+N GQLG GH + +GDDP EMGD+L VDLG G TAT+LS G +HTCA+L D S +C Sbjct: 3 GQLGQGHRNSLGDGPGEMGDNLAAVDLGTGKT------ATAIATGEADTCALLNDGTVKCWGSNGYGQLGQGHSRSLGGDPG--EMGDNLAAVDLGTGKSATAISGGTHFFCALLNDGTVKCWGRNNGGRLGQGHTNRIGDQDGEMGDNLAAVDLGTGKTATAIAAGNGYVCATLNDGTLKCWGENDLGQLGQGHANFLGDDPGEMGDNLAAVDLGTGKTATALSAGYNHTCALLNDNSVKC 236
BLAST of mRNA_E-siliculosus-1a_F_contig10249.219.1 vs. uniprot
Match: A0A7C1YL65_9ACTN (Uncharacterized protein (Fragment) n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7C1YL65_9ACTN) HSP 1 Score: 221 bits (563), Expect = 5.980e-65 Identity = 121/247 (48.99%), Postives = 155/247 (62.75%), Query Frame = 1 Query: 1 GRNDWGQLGKGDFLDRGDDPTTMGNNLTAVDLGTAPSGNGTAVAVAITTGQQFTCVLVEGGGVKCFGRNDEGQCGRGNLDTNVGSNGLEDMGDNLPYVDLGAGVEAISVSSGTASTCAALLGGGVKCWGGNSYGGLGVGDSYNVGDEEDDMGDNVQEVDLGTGETGYYVAYGLRHACAILMGGNVKCWGDNRSGQLGLGHVDTIGDDPSEMGDDLPYVDLGAGNTATSLSLGESHTCAILGDGSTRC 741 G N GQLG+GD DRGD+P MG NL AVDLG + A AIT G TC L++ VKC+G N GQ G+G+ ++ G G +MGDNLP ++L G A ++S+ TCA L G VKCWG N GGLG G + ++GD +MG+N+ +DLG G T + G H CA+L VKCWGDN GQLG G D IGD+P EMGD+LP VDLGAG TAT+++ G HTCA+L + + +C Sbjct: 69 GSNSSGQLGQGDNTDRGDNPGEMGANLPAVDLGAGRT------ATAITAGTNHTCALLDNDTVKCWGNNVLGQLGQGDANSRGGDPG--EMGDNLPTINLSRGGTATAISTSGVHTCALLHNGTVKCWGYNLNGGLGQGHTDDIGDNPGEMGNNLPPIDLGAGRTATAITAGDSHTCALLDNSTVKCWGDNSYGQLGQGTTDDIGDNPGEMGDNLPPVDLGAGRTATAITAGSFHTCALLDNNTVKC 307
BLAST of mRNA_E-siliculosus-1a_F_contig10249.219.1 vs. uniprot
Match: A0A150G0E4_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150G0E4_GONPE) HSP 1 Score: 206 bits (523), Expect = 5.740e-62 Identity = 116/247 (46.96%), Postives = 149/247 (60.32%), Query Frame = 1 Query: 1 GRNDWGQLGKGDFLDRGDDPTTMGNNLTAVDLGTAPSGNGTAVAVAITTGQQFTCVLVEGGGVKCFGRNDEGQCGRGNLDTNVGSNGLEDMGDNLPYVDLGAGVEAISVSSGTASTCAALLGGGVKCWGGNSYGGLGVGDSYNVGDEEDDMGDNVQEVDLGTGETGYYVAYGLRHACAILMGGNVKCWGDNRSGQLGLGHVDTIGDDPSEMGDDLPYVDLGAGNTATSLSLGESHTCAILGDGSTRC 741 GR GQLG GD +RGD+P MG+NL VDLGT + AV + G TC +++ G KC+G N+ Q G G DTN + +MGD+LP+VDLG G A++++ G TCA L G KCWG +S G LG GD+ GD +MGD++ VDLGTG T + G H+CA+L KCWG GQLG G ++T GD P EMGD+LPYVDLG G TA +L+ G H CAIL + +C Sbjct: 54 GRAANGQLGYGDTNNRGDNPGEMGDNLPFVDLGTGRT------AVVLAGGHYHTCAVLDNGRAKCWGWNNAAQLGYG--DTNNRGDNPGEMGDSLPFVDLGTGRTAVAMAGGELHTCAVLDNGRAKCWGVSSLGQLGYGDTSIRGDNPGEMGDSLPYVDLGTGRTAVVITAGTYHSCAVLDNARAKCWGPYYFGQLGYGDLNTRGDGPGEMGDNLPYVDLGTGRTAVALATGAYHNCAILDNRRVKC 292
BLAST of mRNA_E-siliculosus-1a_F_contig10249.219.1 vs. uniprot
Match: A0A7C1YRK2_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7C1YRK2_9ACTN) HSP 1 Score: 214 bits (546), Expect = 9.110e-62 Identity = 119/242 (49.17%), Postives = 153/242 (63.22%), Query Frame = 1 Query: 16 GQLGKGDFLDRGDDPTTMGNNLTAVDLGTAPSGNGTAVAVAITTGQQFTCVLVEGGGVKCFGRNDEGQCGRGNLDTNVGSNGLEDMGDNLPYVDLGAGVEAISVSSGTASTCAALLGGGVKCWGGNSYGGLGVGDSYNVGDEEDDMGDNVQEVDLGTGETGYYVAYGLRHACAILMGGNVKCWGDNRSGQLGLGHVDTIGDDPSEMGDDLPYVDLGAGNTATSLSLGESHTCAILGDGSTRC 741 G+LG+G GD G+ L VDLGT + A AI GQQ+TC L++ G VKC+G N GQ G+GN D ++G N E MGDNLP VDLG G A ++S+G++ TCA L G VKCWG S+G LG GD GD +MGDN+ ++LGTG T V+ G H CA+L G VKCWG +GQLG G V +GD+P EMGD+LP VDLG+G TA +++ G +CA+L DG +C Sbjct: 139 GRLGQGSTDTIGDSTAERGDGLPTVDLGTGRT------ATAIAAGQQYTCALLDDGTVKCWGNNSSGQLGQGNTD-DIGDNPGE-MGDNLPAVDLGTGRTATAISAGSSHTCALLDDGTVKCWGSGSFGRLGYGDLTKRGDGAGEMGDNLPPLELGTGRTATAVSAGNTHTCALLDDGTVKCWGGGFNGQLGTGDVTGLGDNPGEMGDNLPPVDLGSGRTAIAIAAGSRASCAVLDDGGVKC 372
BLAST of mRNA_E-siliculosus-1a_F_contig10249.219.1 vs. uniprot
Match: A0A830HVT6_9CHLO (EGF-like domain-containing protein n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HVT6_9CHLO) HSP 1 Score: 211 bits (537), Expect = 2.780e-61 Identity = 116/247 (46.96%), Postives = 148/247 (59.92%), Query Frame = 1 Query: 1 GRNDWGQLGKGDFLDRGDDPTTMGNNLTAVDLGTAPSGNGTAVAVAITTGQQFTCVLVEGGGVKCFGRNDEGQCGRGNLDTNVGSNGLEDMGDNLPYVDLGAGVEAISVSSGTASTCAALLGGGVKCWGGNSYGGLGVGDSYNVGDEEDDMGDNVQEVDLGTGETGYYVAYGLRHACAILMGGNVKCWGDNRSGQLGLGHVDTIGDDPSEMGDDLPYVDLGAGNTATSLSLGESHTCAILGDGSTRC 741 G N GQLG GD + RGD P TMG+NL VD+GT + IT G TC +++ VKC+G N G+ G G DTN +G +MGDNLPYVD+G G +S+G++ TCA L +KCWG N G LG+GD+ GD ++MGDN+ VD+GTG T ++ H CAIL VKCWG N GQLG G T GD P+EMGD+LPYVD+G G T + + HTCAIL + +C Sbjct: 165 GNNGNGQLGYGDTIQRGDIPNTMGDNLPYVDVGTGRT------VKQITAGSSHTCAILDDDKVKCWGSNHNGELGYG--DTNRRGDGPNEMGDNLPYVDVGTGRTVKQISAGSSYTCAILDNDKLKCWGSNYAGALGIGDTMQRGDGPNEMGDNLPYVDVGTGRTVKQISVSGSHTCAILDDDKVKCWGYNYVGQLGYGDTTTRGDGPNEMGDNLPYVDVGTGRTVKQIEVSGGHTCAILDNDKLKC 403
BLAST of mRNA_E-siliculosus-1a_F_contig10249.219.1 vs. uniprot
Match: A0A0K1ECX1_CHOCO (Uncharacterized protein n=1 Tax=Chondromyces crocatus TaxID=52 RepID=A0A0K1ECX1_CHOCO) HSP 1 Score: 207 bits (528), Expect = 5.320e-61 Identity = 120/247 (48.58%), Postives = 146/247 (59.11%), Query Frame = 1 Query: 1 GRNDWGQLGKGDFLDRGDDPTTMGNNLTAVDLGTAPSGNGTAVAVAITTGQQFTCVLVEGGGVKCFGRNDEGQCGRGNLDTNVGSNGLEDMGDNLPYVDLGAGVEAISVSSGTASTCAALLGGGVKCWGGNSYGGLGVGDSYNVGDEEDDMGDNVQEVDLGTGETGYYVAYGLRHACAILMGGNVKCWGDNRSGQLGLGHVDTIGDDPSEMGDDLPYVDLGAGNTATSLSLGESHTCAILGDGSTRC 741 G N GQLG GD RG+ P MG L A +LGT + AVA+ G +C L+ GG VKC+G N+ GQ G G D N +MGD LP VDLGAG A ++ +G +CA L GGVKCWG N G LG+GD GD+ +MGD + VD H CA+L G VKCWGDNRSG+LGLG V+ GDD EMGD LP VDLGAG A +++ GE+HTCA+LGD S +C Sbjct: 69 GDNWVGQLGIGDTRTRGEGPGQMGTRLPAAELGTG------SAAVAVAAGAWHSCALLHGGSVKCWGFNEYGQLGVG--DYRNRGNDPGEMGDALPAVDLGAGKTATAIVAGAWHSCALLHDGGVKCWGDNQSGQLGLGDVEARGDDAGEMGDGLPAVDXXXXXXXXXXXXXXXHTCALLGDGGVKCWGDNRSGRLGLGDVEARGDDAGEMGDSLPAVDLGAGQAAVAIAAGEAHTCALLGDQSVKC 307
BLAST of mRNA_E-siliculosus-1a_F_contig10249.219.1 vs. uniprot
Match: L7UHS0_MYXSD (RCC1 repeat-containing protein n=1 Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) TaxID=1278073 RepID=L7UHS0_MYXSD) HSP 1 Score: 205 bits (521), Expect = 6.110e-61 Identity = 121/247 (48.99%), Postives = 149/247 (60.32%), Query Frame = 1 Query: 1 GRNDWGQLGKGDFLDRGDDPTTMGNNLTAVDLGTAPSGNGTAVAVAITTGQQFTCVLVEGGGVKCFGRNDEGQCGRGNLDTNVGSNGLEDMGDNLPYVDLGAGVEAISVSSGTASTCAALLGGGVKCWGGNSYGGLGVGDSYNVGDEEDDMGDNVQEVDLGTGETGYYVAYGLRHACAILMGGNVKCWGDNRSGQLGLGHVDTIGDDPSEMGDDLPYVDLGAGNTATSLSLGESHTCAILGDGSTRC 741 GRN GQLG GD ++RG P M + L VDLG VA A+ TG + C ++E G VKC+G N GQ G G + S G MGD LP V+LG A ++++G A +CA L G VKCWGGN YG LG+GD + G E D+MGD + EV LG G T +A G H CAIL G VKCWGDN G+LGLG GD P EMGD LP VDLG G TA ++SLG ++CA+L D + +C Sbjct: 39 GRNTEGQLGLGDTVNRGAGPREMDDALAFVDLGVG------RVAKALATGYEHACAILEDGAVKCWGYNMNGQLGLGVRSNHGDSQGS--MGDALPTVNLGTKRTAKAITAGRAHSCAILDDGAVKCWGGNEYGQLGLGDKASRGVEPDEMGDALPEVKLGVGRTATAIAAGNLHTCAILDDGAVKCWGDNGYGRLGLGDKSGRGDAPGEMGDALPSVDLGTGRTAKAISLGYYYSCALLDDDTLKC 277
BLAST of mRNA_E-siliculosus-1a_F_contig10249.219.1 vs. uniprot
Match: A0A520PN85_9PROT (Big_5 domain-containing protein (Fragment) n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A520PN85_9PROT) HSP 1 Score: 211 bits (536), Expect = 7.550e-61 Identity = 114/247 (46.15%), Postives = 151/247 (61.13%), Query Frame = 1 Query: 1 GRNDWGQLGKGDFLDRGDDPTTMGNNLTAVDLGTAPSGNGTAVAVAITTGQQFTCVLVEGGGVKCFGRNDEGQCGRGNLDTNVGSNGLEDMGDNLPYVDLGAGVEAISVSSGTASTCAALLGGGVKCWGGNSYGGLGVGDSYNVGDEEDDMGDNVQEVDLGTGETGYYVAYGLRHACAILMGGNVKCWGDNRSGQLGLGHVDTIGDDPSEMGDDLPYVDLGAGNTATSLSLGESHTCAILGDGSTRC 741 G+ND GQLG+G+ GD + MG+NLT +DLGT + A AI G C +++ +KC+G N GQ G G+ D +G +MGDNLP +DLG G A ++++G A +CA L VKCWG N G LG+GD+ N GD D+MGD++ VDLGTG T + G H CA+L +VKCWGD GQ+G G +GD EMGD L +DLG G TAT++S G SHTCA+L + S +C Sbjct: 269 GKNDRGQLGQGNTNSLGDAGSEMGDNLTPIDLGTGRT------ATAIAGGGWHNCAILDNSSIKCWGINSAGQLGIGSTDDR--GDGANEMGDNLPSIDLGTGRTATAIAAGGAHSCAILDNSAVKCWGKNDAGQLGLGDTNNRGDGADEMGDDLDAVDLGTGRTAVSITAGYAHTCALLDNYSVKCWGDAAEGQMGTGKTFDLGDAAGEMGDSLTAIDLGTGRTATAISAGRSHTCAMLDNSSIKC 507 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10249.219.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10249.219.1 >prot_E-siliculosus-1a_F_contig10249.219.1 ID=prot_E-siliculosus-1a_F_contig10249.219.1|Name=mRNA_E-siliculosus-1a_F_contig10249.219.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=251bp GRNDWGQLGKGDFLDRGDDPTTMGNNLTAVDLGTAPSGNGTAVAVAITTGback to top mRNA from alignment at E-siliculosus-1a_F_contig10249:457..2290+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig10249.219.1 ID=mRNA_E-siliculosus-1a_F_contig10249.219.1|Name=mRNA_E-siliculosus-1a_F_contig10249.219.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1834bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10249:457..2290+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10249:457..2290+ >mRNA_E-siliculosus-1a_F_contig10249.219.1 ID=mRNA_E-siliculosus-1a_F_contig10249.219.1|Name=mRNA_E-siliculosus-1a_F_contig10249.219.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1506bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10249:457..2290+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |