mRNA_E-siliculosus-1a_F_contig10242.216.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10242.216.1 vs. uniprot
Match: A0A6H5LQ87_9PHAE (LETM1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LQ87_9PHAE) HSP 1 Score: 153 bits (386), Expect = 1.830e-41 Identity = 75/76 (98.68%), Postives = 76/76 (100.00%), Query Frame = 1 Query: 19 SRYAKETYDKIKSGVDFYWTGTKILGNDVGYALTLVSKAVQGSILNPREVRTLRRTAKDCVTFIPFVMILIFPLTP 246 SRYAKETYDKIKSGVDFYWTGTKILGNDVGYALTLVSKAVQGSILNPREVRTLRRTAKDCVTFIPFV+ILIFPLTP Sbjct: 647 SRYAKETYDKIKSGVDFYWTGTKILGNDVGYALTLVSKAVQGSILNPREVRTLRRTAKDCVTFIPFVVILIFPLTP 722
BLAST of mRNA_E-siliculosus-1a_F_contig10242.216.1 vs. uniprot
Match: D8LP03_ECTSI (LETM1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP03_ECTSI) HSP 1 Score: 148 bits (373), Expect = 4.550e-40 Identity = 72/76 (94.74%), Postives = 75/76 (98.68%), Query Frame = 1 Query: 19 SRYAKETYDKIKSGVDFYWTGTKILGNDVGYALTLVSKAVQGSILNPREVRTLRRTAKDCVTFIPFVMILIFPLTP 246 SRYAKETYDKIKSG+DFYWTGTKILGNDVGYALTLVSKAVQGSILNPREVRTLRRTAKDCVTFIPFV+ILI PL+P Sbjct: 464 SRYAKETYDKIKSGLDFYWTGTKILGNDVGYALTLVSKAVQGSILNPREVRTLRRTAKDCVTFIPFVIILIIPLSP 539
BLAST of mRNA_E-siliculosus-1a_F_contig10242.216.1 vs. uniprot
Match: A0A836CA55_9STRA (LETM1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA55_9STRA) HSP 1 Score: 99.4 bits (246), Expect = 2.060e-23 Identity = 46/76 (60.53%), Postives = 60/76 (78.95%), Query Frame = 1 Query: 19 SRYAKETYDKIKSGVDFYWTGTKILGNDVGYALTLVSKAVQGSILNPREVRTLRRTAKDCVTFIPFVMILIFPLTP 246 +RY +ET +K++S +DFY TGTK+LG D+ YAL LV KA+QG L PREVRTLRR+ KD +T IP ++ILI PL+P Sbjct: 156 ARYVRETVEKLRSALDFYVTGTKLLGQDIQYALALVGKAIQGYTLKPREVRTLRRSGKDLLTLIPTIIILILPLSP 231
BLAST of mRNA_E-siliculosus-1a_F_contig10242.216.1 vs. uniprot
Match: A0A7S2SGM0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SGM0_9STRA) HSP 1 Score: 92.0 bits (227), Expect = 2.690e-20 Identity = 41/69 (59.42%), Postives = 58/69 (84.06%), Query Frame = 1 Query: 40 YDKIKSGVDFYWTGTKILGNDVGYALTLVSKAVQGSILNPREVRTLRRTAKDCVTFIPFVMILIFPLTP 246 + K+++G+ FY TGT++LG+D+ YA++L+ KAVQG+ L PRE RTLRRTAKD VT +PFV+IL+ PL+P Sbjct: 242 WSKLQAGLSFYTTGTRLLGDDLNYAVSLLGKAVQGTTLAPREARTLRRTAKDLVTLVPFVIILLIPLSP 310
BLAST of mRNA_E-siliculosus-1a_F_contig10242.216.1 vs. uniprot
Match: A0A7S2X822_9EUKA (Hypothetical protein n=2 Tax=Lotharella TaxID=74819 RepID=A0A7S2X822_9EUKA) HSP 1 Score: 86.7 bits (213), Expect = 1.360e-19 Identity = 39/72 (54.17%), Postives = 53/72 (73.61%), Query Frame = 1 Query: 31 KETYDKIKSGVDFYWTGTKILGNDVGYALTLVSKAVQGSILNPREVRTLRRTAKDCVTFIPFVMILIFPLTP 246 K+T K+K + FY GTK+LGND+ YAL L+++A+ G L PRE R L+RTAKD +T +PF +IL+ PLTP Sbjct: 62 KDTVTKLKMALSFYVLGTKLLGNDIQYALWLIARAIDGDTLKPREARMLQRTAKDLLTLLPFTIILLIPLTP 133
BLAST of mRNA_E-siliculosus-1a_F_contig10242.216.1 vs. uniprot
Match: A0A7S3KWU1_9STRA (Hypothetical protein n=2 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3KWU1_9STRA) HSP 1 Score: 89.4 bits (220), Expect = 5.730e-19 Identity = 44/75 (58.67%), Postives = 54/75 (72.00%), Query Frame = 1 Query: 22 RYAKETYDKIKSGVDFYWTGTKILGNDVGYALTLVSKAVQGSILNPREVRTLRRTAKDCVTFIPFVMILIFPLTP 246 R+ E D+ K G+ FY G ++L NDV + L LVS+A QG L PREVRT+RRT KD +TFIPFV+ILI PLTP Sbjct: 485 RWLAELVDQTKKGLAFYVKGVRLLWNDVAFCLNLVSRAAQGYTLKPREVRTIRRTFKDILTFIPFVIILIIPLTP 559
BLAST of mRNA_E-siliculosus-1a_F_contig10242.216.1 vs. uniprot
Match: A0A0D2M6A9_9CHLO (LETM1 domain-containing protein n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2M6A9_9CHLO) HSP 1 Score: 85.5 bits (210), Expect = 1.710e-18 Identity = 44/73 (60.27%), Postives = 52/73 (71.23%), Query Frame = 1 Query: 28 AKETYDKIKSGVDFYWTGTKILGNDVGYALTLVSKAVQGSILNPREVRTLRRTAKDCVTFIPFVMILIFPLTP 246 AKE DK+ GV F G ++LG+DVG A L SKA G IL PREV LRRTA+D +TFIPF++ILI PLTP Sbjct: 20 AKEGADKVGEGVGFLTRGVRLLGSDVGNAGRLFSKAALGGILKPREVTALRRTARDLLTFIPFIIILIIPLTP 92
BLAST of mRNA_E-siliculosus-1a_F_contig10242.216.1 vs. uniprot
Match: A0A1Z5JMY9_FISSO (LETM1 domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JMY9_FISSO) HSP 1 Score: 87.8 bits (216), Expect = 2.000e-18 Identity = 44/82 (53.66%), Postives = 56/82 (68.29%), Query Frame = 1 Query: 1 LCGRGESRYAKETYDKIKSGVDFYWTGTKILGNDVGYALTLVSKAVQGSILNPREVRTLRRTAKDCVTFIPFVMILIFPLTP 246 L G R++ + DK K G+ FY G ++ ND Y L L+++AVQG L PREVRTLRRT KD +TFIPFV+ILI PL+P Sbjct: 501 LDGESIKRWSIDLLDKTKKGLAFYVKGVRLFWNDNVYCLRLINRAVQGYTLEPREVRTLRRTFKDIITFIPFVIILIIPLSP 582
BLAST of mRNA_E-siliculosus-1a_F_contig10242.216.1 vs. uniprot
Match: A0A5J4Z2D7_PORPP (LETM1 and EF-hand domain-containing protein anon-60Da, mitochondrial n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z2D7_PORPP) HSP 1 Score: 87.4 bits (215), Expect = 2.730e-18 Identity = 40/71 (56.34%), Postives = 54/71 (76.06%), Query Frame = 1 Query: 34 ETYDKIKSGVDFYWTGTKILGNDVGYALTLVSKAVQGSILNPREVRTLRRTAKDCVTFIPFVMILIFPLTP 246 ET K + GV+FYW G +++G D+ YA+ LV KA+ G+ L+PREVRTLRRT +D +T IPF +ILI PL+P Sbjct: 539 ETVTKGREGVEFYWRGFRLIGGDLRYAVRLVRKAILGTTLSPREVRTLRRTGRDVLTLIPFTIILIIPLSP 609
BLAST of mRNA_E-siliculosus-1a_F_contig10242.216.1 vs. uniprot
Match: A0A7S0B253_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0B253_9STRA) HSP 1 Score: 83.2 bits (204), Expect = 2.590e-17 Identity = 40/75 (53.33%), Postives = 55/75 (73.33%), Query Frame = 1 Query: 22 RYAKETYDKIKSGVDFYWTGTKILGNDVGYALTLVSKAVQGSILNPREVRTLRRTAKDCVTFIPFVMILIFPLTP 246 R+ + +K K+G+ FY G ++L ND Y+L L+ +A+QG L PREVRTLRR+ KD +TFIPFV+ILI PL+P Sbjct: 127 RFLADLLEKTKTGLLFYVKGVELLWNDAIYSLRLIGRALQGYTLQPREVRTLRRSFKDIITFIPFVIILIIPLSP 201 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10242.216.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10242.216.1 >prot_E-siliculosus-1a_F_contig10242.216.1 ID=prot_E-siliculosus-1a_F_contig10242.216.1|Name=mRNA_E-siliculosus-1a_F_contig10242.216.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=82bp LCGRGESRYAKETYDKIKSGVDFYWTGTKILGNDVGYALTLVSKAVQGSIback to top mRNA from alignment at E-siliculosus-1a_F_contig10242:1398..2295+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig10242.216.1 ID=mRNA_E-siliculosus-1a_F_contig10242.216.1|Name=mRNA_E-siliculosus-1a_F_contig10242.216.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=898bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10242:1398..2295+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10242:1398..2295+ >mRNA_E-siliculosus-1a_F_contig10242.216.1 ID=mRNA_E-siliculosus-1a_F_contig10242.216.1|Name=mRNA_E-siliculosus-1a_F_contig10242.216.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=492bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10242:1398..2295+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |