mRNA_E-siliculosus-1a_F_contig1023.210.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1023.210.1 vs. uniprot
Match: D8LK84_ECTSI (Beta 1,3 exoglucanase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK84_ECTSI) HSP 1 Score: 339 bits (869), Expect = 5.650e-115 Identity = 173/202 (85.64%), Postives = 181/202 (89.60%), Query Frame = 1 Query: 214 AAMRRALEADEPGKANTIDELHDRNNDAAKDEKGDPIGVWAPSSSKPVVLQPHQDSGVGSPVAITVAAEHVGCFTLSRMEVFLRNRITDNPRASTPLRVNSKADMTPQECAGICAGGGSDVFAVSRGDLFTCLSEADSAGFLRGRGNGVCNSPCTGDASQTCGGRAAFDAYKIVPRRGDENADGIALGDSPTTTDTAATSTT 819
AAMR +E D PGKANTIDEL D NND A DEKGDPIGV APSSSKP+ LQP++D+G GSP+AIT A EHVGCFTLSRMEVFLRNRITDNPRAST +RVNSKADMTPQECAGICAGGG DVFAVSRGDLFTCLSEADSAGFL GRGNGVCNSPCTGDASQTCGG AAFDAYKIVPR DENADGIALG+SPTTTDTA TS T
Sbjct: 3 AAMRTVVERDAPGKANTIDELPDMNNDDATDEKGDPIGVLAPSSSKPIALQPNKDNGAGSPMAITAAPEHVGCFTLSRMEVFLRNRITDNPRASTLVRVNSKADMTPQECAGICAGGGHDVFAVSRGDLFTCLSEADSAGFLGGRGNGVCNSPCTGDASQTCGGHAAFDAYKIVPRGDDENADGIALGNSPTTTDTATTSPT 204
BLAST of mRNA_E-siliculosus-1a_F_contig1023.210.1 vs. uniprot
Match: A0A6H5J7Z3_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7Z3_9PHAE) HSP 1 Score: 295 bits (755), Expect = 1.990e-97 Identity = 153/187 (81.82%), Postives = 165/187 (88.24%), Query Frame = 1 Query: 265 IDELHDRNNDAAKDEKGDPIGVWAPSSSKPVVLQ-PHQDSGVGSPVAITVAAEHVGCFTLSRMEVFLRNRITDNPRASTPLRVNSKADMTPQECAGICAGGGSDVFAVSRGDLFTCLSEADSAGFLRGRGNGVCNSPCTGDASQTCGGRAAFDAYKIVPRRGDENADGIALGDSPTTTDTAATSTTA 822
+ +L D N DAA DE+G IGV APSSSKPVVL+ P++D+GVGSP+AIT A EHVGCFTL+RMEVFLRNRI DNPR ST +RV+SKADMTP ECAGICAGGGSD FAVSRGDLFTCLSE DS GFLRGRGNGVCNSPCTGDASQTCGG AAFDAYKIV R DENADGIALGDSP+TTDTAATSTTA
Sbjct: 27 VHQLPDMNYDAATDEEGHTIGVLAPSSSKPVVLEEPNEDNGVGSPMAITAAPEHVGCFTLTRMEVFLRNRIIDNPRGSTLVRVHSKADMTPLECAGICAGGGSDGFAVSRGDLFTCLSEGDSGGFLRGRGNGVCNSPCTGDASQTCGGHAAFDAYKIVSRGDDENADGIALGDSPSTTDTAATSTTA 213
BLAST of mRNA_E-siliculosus-1a_F_contig1023.210.1 vs. uniprot
Match: D8LK89_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK89_ECTSI) HSP 1 Score: 176 bits (446), Expect = 1.720e-52 Identity = 88/98 (89.80%), Postives = 90/98 (91.84%), Query Frame = 1 Query: 397 VAITVAAEHVGCFTLSRMEVFLRNRITDNPRASTPLRVNSKADMTPQECAGICAGGGSDVFAVSRGDLFTCLSEADSAGFLRGRGNGVCNSPCTGDAS 690
+AIT A EHVGCFTLSRMEVFLRNRITDNPRAST +RVNSKADMTPQEC GICAGGGS VFAVSR DLFT LSEADSAGFL GRGNGVCNSPCTGDAS
Sbjct: 1 MAITAAPEHVGCFTLSRMEVFLRNRITDNPRASTLVRVNSKADMTPQECVGICAGGGSVVFAVSRCDLFTSLSEADSAGFLGGRGNGVCNSPCTGDAS 98
BLAST of mRNA_E-siliculosus-1a_F_contig1023.210.1 vs. uniprot
Match: A0A6H5KIS5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIS5_9PHAE) HSP 1 Score: 111 bits (278), Expect = 2.680e-27 Identity = 58/82 (70.73%), Postives = 67/82 (81.71%), Query Frame = 1 Query: 292 DAAKDEKGDPIGVWAPSSSKPVVLQP-HQDSGVGSPVAITVAAEHVGCFTLSRMEVFLRNRITDNPRASTPLRVNSKADMTP 534
D A DE+G IGV APSSSKPV+L+ ++D+ VG P+AIT A EHVGCF LSR+EVFLRNRITDNPR ST LRV SKAD+TP
Sbjct: 4 DVATDEEGHTIGVLAPSSSKPVILEESNEDNRVGLPMAITAAPEHVGCFMLSRVEVFLRNRITDNPRGSTLLRVYSKADITP 85
BLAST of mRNA_E-siliculosus-1a_F_contig1023.210.1 vs. uniprot
Match: D8LKF8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKF8_ECTSI) HSP 1 Score: 113 bits (282), Expect = 3.540e-24 Identity = 62/140 (44.29%), Postives = 81/140 (57.86%), Query Frame = 1 Query: 319 PIGVWAPSSSKPV--VLQPHQDSGVGSPVAITVAAEHVGCFTLSRMEVFLRNRITDNPRASTPLRVNSKADMTPQECAGICAGGGSDVFAVSRGDLFTCLSEADSAGFLRGRGNGVCNSPCTGDASQTCGGRAAFDAYKI 732
P + SSS+P +L +D+ + + EHVGC L+ E+ RI A V + DMTPQ+CA IC GGG D FAV+RGDL TC +EAD AG R GVC++PCTGD+SQ CGG +FD Y++
Sbjct: 1416 PGSNYGDSSSRPFQPLLSVDEDATTTTAASTHDRFEHVGCLKLTEEEMISLGRIETKAEADIIPGVFGRDDMTPQQCAVICEGGGQDGFAVTRGDLCTCFAEAD-AGIFEDRKGGVCDAPCTGDSSQPCGGVGSFDVYRL 1554
BLAST of mRNA_E-siliculosus-1a_F_contig1023.210.1 vs. uniprot
Match: A0A6H5KL41_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL41_9PHAE) HSP 1 Score: 101 bits (252), Expect = 4.330e-22 Identity = 60/138 (43.48%), Postives = 75/138 (54.35%), Query Frame = 1 Query: 418 EHVGCFTLSRMEVFLRNRITDNPRASTPLRVNSKADMTPQECAGICAGGGSDVFAVSRGDLFTCLSEADSAGFLRGRGNGVCNSPCTGDASQTCGGRAAFDAYKI----------VPRRGDENAD--GIALGDSPTTT 795
EHVGC L+ E+ RI A V + DMTP CA IC G G D FAV+RGDL TC +EAD+ G R GVC++PCTGD+SQ CGG +FD Y++ +PR D G+ + D TTT
Sbjct: 85 EHVGCLKLAEEEMVSLRRIKTKAEADIIPGVFGRDDMTPLGCAAICEGRGQDGFAVTRGDLCTCFTEADT-GIFDDRKGGVCDAPCTGDSSQPCGGVDSFDVYQLSLTEGHDRNQLPRHATVTVDNTGLPVNDETTTT 221
BLAST of mRNA_E-siliculosus-1a_F_contig1023.210.1 vs. uniprot
Match: D7FJ68_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ68_ECTSI) HSP 1 Score: 62.8 bits (151), Expect = 3.340e-7 Identity = 37/108 (34.26%), Postives = 57/108 (52.78%), Query Frame = 1 Query: 418 EHVGCFTLSRMEVFLRNRITDNPRASTPL-RVNSKADMTPQECAGICAGGGSDVFAVSRGDLFTCLSEADSAGFLR-GRGNGVCNSPCTGDASQTCGGRAAFDAYKIV 735
EHVGC+ LS P AS L +++ + MT C CA +D FA+ +G + TC +E G+L G+C++PC+GD + TCGG +D Y+++
Sbjct: 3185 EHVGCYALS-------------PTASVELEKLDGEEQMTKMLCFEACAAESADYFALFKGSVCTCGNEG---GYLTMPMEMGICDTPCSGDVTATCGGYYDYDLYELM 3276
BLAST of mRNA_E-siliculosus-1a_F_contig1023.210.1 vs. uniprot
Match: A0A6H5KS07_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS07_9PHAE) HSP 1 Score: 57.4 bits (137), Expect = 1.650e-5 Identity = 36/106 (33.96%), Postives = 47/106 (44.34%), Query Frame = 1 Query: 418 EHVGCFTLSRMEVFLRNRITDNPRAST---PLRVNSKADMTPQECAGICAGGGSDVFAVSRGDLFTCLSEADSAGFLRGRGNGVCNSPCTGDASQTCGGRAAFDAY 726
E++GC+ I DN + S+ L + MTP C C G+D+F V G C D+ L G VC+ PC GD S TCGG A DA+
Sbjct: 779 EYLGCY------------IDDNDKFSSRILQLAYTASDSMTPMMCEDFCRSSGADIFGVEFGHQCFCGDSRDTD--LARYGTTVCDHPCAGDDSVTCGGHLAVDAF 870 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1023.210.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 8 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1023.210.1 >prot_E-siliculosus-1a_F_contig1023.210.1 ID=prot_E-siliculosus-1a_F_contig1023.210.1|Name=mRNA_E-siliculosus-1a_F_contig1023.210.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=301bp HTPHSSAGAELQCIEQGPTPIKAPSEALQGSIAPVVEIDGDSSSDEDAIPback to top mRNA from alignment at E-siliculosus-1a_F_contig1023:13696..18415- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1023.210.1 ID=mRNA_E-siliculosus-1a_F_contig1023.210.1|Name=mRNA_E-siliculosus-1a_F_contig1023.210.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4720bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1023:13696..18415- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1023:13696..18415- >mRNA_E-siliculosus-1a_F_contig1023.210.1 ID=mRNA_E-siliculosus-1a_F_contig1023.210.1|Name=mRNA_E-siliculosus-1a_F_contig1023.210.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1806bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1023:13696..18415- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |