Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10221.206.1 vs. uniprot
Match: D7G3U5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3U5_ECTSI) HSP 1 Score: 81.3 bits (199), Expect = 1.750e-16 Identity = 46/63 (73.02%), Postives = 52/63 (82.54%), Query Frame = 1 Query: 1 MGMSPTAFRRLVSIQESSSSDASIDMGSFTWTILSASKFIEFVLEDGSGDE-TQALMLEHIAR 186
M MS TAF+RLVSIQESS SDASID+GSFTW +LS + F +VLED G+E TQALMLEHIAR
Sbjct: 2 MRMSSTAFQRLVSIQESSPSDASIDVGSFTWLMLSDTAFTPWVLEDAPGNEQTQALMLEHIAR 64
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 0 |
| Cds size | 186 |
| Model size | 186 |
| Exons | 1 |
| Hectar predicted targeting category | other localisation |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927526.4188514-CDS-E-siliculosus-1a_F_contig10221:1585..1771 | 1622927526.4188514-CDS-E-siliculosus-1a_F_contig10221:1585..1771 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig10221 1586..1771 + |
| 1696318567.8486657-CDS-E-siliculosus-1a_F_contig10221:1585..1771 | 1696318567.8486657-CDS-E-siliculosus-1a_F_contig10221:1585..1771 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig10221 1586..1771 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10221.206.1 >prot_E-siliculosus-1a_F_contig10221.206.1 ID=prot_E-siliculosus-1a_F_contig10221.206.1|Name=mRNA_E-siliculosus-1a_F_contig10221.206.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=62bp
MGMSPTAFRRLVSIQESSSSDASIDMGSFTWTILSASKFIEFVLEDGSGD
ETQALMLEHIAR back to topmRNA from alignment at E-siliculosus-1a_F_contig10221:1586..1771+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig10221.206.1 ID=mRNA_E-siliculosus-1a_F_contig10221.206.1|Name=mRNA_E-siliculosus-1a_F_contig10221.206.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=186bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10221:1586..1771+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGGGATGAGCCCCACCGCTTTCCGAAGACTCGTGAGTATTCAAGAATC
GTCGTCCTCTGACGCCTCGATCGACATGGGATCTTTCACGTGGACCATCC
TGTCCGCCTCGAAATTCATAGAATTCGTTCTAGAGGACGGCTCCGGCGAC
GAAACCCAGGCTCTCATGCTTGAGCATATCGCCAGA back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10221:1586..1771+ >mRNA_E-siliculosus-1a_F_contig10221.206.1 ID=mRNA_E-siliculosus-1a_F_contig10221.206.1|Name=mRNA_E-siliculosus-1a_F_contig10221.206.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=372bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10221:1586..1771+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGGGATGAGCCCCACCGCTTTCCGAAGACTCGTGAGTATTCAAGAATC
GTCGTCCTCTGACGCCTCGATCGACATGGGATCTTTCACGTGGACCATCC
TGTCCGCCTCGAAATTCATAGAATTCGTTCTAGAGGACGGCTCCGGCGAC
GAAACCCAGGCTCTCATGCTTGAGCATATCGCCAGAATGGGGATGAGCCC
CACCGCTTTCCGAAGACTCGTGAGTATTCAAGAATCGTCGTCCTCTGACG
CCTCGATCGACATGGGATCTTTCACGTGGACCATCCTGTCCGCCTCGAAA
TTCATAGAATTCGTTCTAGAGGACGGCTCCGGCGACGAAACCCAGGCTCT
CATGCTTGAGCATATCGCCAGA back to top
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