mRNA_E-siliculosus-1a_F_contig10215.203.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10215.203.1 vs. uniprot
Match: A0A6H5K3H5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3H5_9PHAE) HSP 1 Score: 194 bits (494), Expect = 6.210e-61 Identity = 91/146 (62.33%), Postives = 113/146 (77.40%), Query Frame = 1 Query: 10 QVRALLEHVDVQGGVLDCCGAGQDAVSTVLTARGLRVATNDLSPSLVADTHLDASTDAFAEAYLEDTRRPDWVVTSPPYKNAFFILKQALRVGRVGVAFKLRLTFLEPVKSRGRWLKENPPDRIVMLPRATYRGRKCSSTEAWFVW 447 +V ALL +V + GGVLD CG+ DA+ VL A L V+TND +P L ADTHLDA+++ F + + +RPDW+VTSPPY NAF IL +AL V RVGVAFKLRL+FLEP K+RG+WLK+NPP +V+LPRATY GR CSSTEAWF+W Sbjct: 14 KVDALLLNVKLAGGVLDACGSASDAIKVVLEAHSLNVSTNDFNPRLTADTHLDATSEEFTAMFSTEGQRPDWIVTSPPYGNAFSILVRALGVVRVGVAFKLRLSFLEPTKTRGKWLKDNPPSAVVVLPRATYCGRVCSSTEAWFIW 159
BLAST of mRNA_E-siliculosus-1a_F_contig10215.203.1 vs. uniprot
Match: A0A6H5K6T5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6T5_9PHAE) HSP 1 Score: 103 bits (257), Expect = 1.570e-26 Identity = 46/53 (86.79%), Postives = 49/53 (92.45%), Query Frame = 1 Query: 292 VGVAFKLRLTFLEPVKSRGRWLKENPPDRIVMLPRATYRGRKCSSTEAWFVWE 450 +GVAFKLRLTFL P KSRGRWLK+NPPDRIVMLPRATYR R+CSSTE WFVWE Sbjct: 1 MGVAFKLRLTFLGPAKSRGRWLKDNPPDRIVMLPRATYRRRRCSSTETWFVWE 53
BLAST of mRNA_E-siliculosus-1a_F_contig10215.203.1 vs. uniprot
Match: D8LSI1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSI1_ECTSI) HSP 1 Score: 106 bits (264), Expect = 1.840e-26 Identity = 59/131 (45.04%), Postives = 76/131 (58.02%), Query Frame = 1 Query: 64 CGAGQDAVSTVLTARGLRVATNDLSPSLVADTHLDASTDAFAEAYLE--DTRRPDWVVTSPPYKNAFFILKQALRVGRVGVAFKLRLTFLEPVKSRGRWLKENPPDRIVMLPRATY-RGRKCSSTEAWFVW 447 CG DAV+T L + + TND+S ADT+L+AS + F E +L +RP+WVVTSPPY A +K A+ + GVAFK+ + FLEP RG WL+ NPP V L RA Y R + E W VW Sbjct: 2 CGGPTDAVATRLRST-CEILTNDVSSGRPADTNLNASLELFPEDFLAAYSGKRPEWVVTSPPYSRALTFVKAAMSLATKGVAFKMPIFFLEPCADRGGWLQTNPPSVCVFLRRAKYTRANNAKTGEFWGVW 131
BLAST of mRNA_E-siliculosus-1a_F_contig10215.203.1 vs. uniprot
Match: A0A252D8B1_9NOSO (Uncharacterized protein n=1 Tax=Nostoc sp. RF31YmG TaxID=1932668 RepID=A0A252D8B1_9NOSO) HSP 1 Score: 105 bits (263), Expect = 5.530e-26 Identity = 62/148 (41.89%), Postives = 87/148 (58.78%), Query Frame = 1 Query: 13 VRALLEHVDVQGGVLDCCGAGQDAVSTVLTARGLRVATNDLSPSLVADTHLDASTDAFAEAYLEDTRRPDWVVTSPPYKNAFFILKQALRVGRVGVAFKLRLTFLEPVKSRGRWLKENPPDRIVMLPRATYRG--RKCSSTEAWFVWE 450 V LL H+D+ G +L+ C G A+S L GL V T D +AD D DA Y + + DWVVT+PP+ +A IL +A VGVAF LRL++LEP K RG+WL E+PP ++++LPR ++ G + S T AW +W+ Sbjct: 26 VDTLLNHIDITGTLLEPCN-GSGAISNRLKEDGLSVITTD-----IADNPQD---DATTHQYWQRQKPYDWVVTNPPFDSASKILPKAYEYASVGVAFLLRLSYLEPCKDRGQWLAEHPP-KLIVLPRISFTGDGKVDSCTCAWMIWK 163
BLAST of mRNA_E-siliculosus-1a_F_contig10215.203.1 vs. uniprot
Match: D7FJU4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJU4_ECTSI) HSP 1 Score: 106 bits (265), Expect = 8.270e-26 Identity = 64/133 (48.12%), Postives = 81/133 (60.90%), Query Frame = 1 Query: 13 VRALLEHVDVQGGVLDCCGAGQDAVSTVLTARGLRVATNDLSP-----SLVADTHLDASTDAFAEAYL--EDTRRPDWVVTSPPYKNAFFILKQALRVGRVGVAFKLRLTFLEPVKSRGRWLKENPPDRIVML 390 V ALL V+++G VLD CG DA++T L A +V TND+S L DT+LDAS +FA +L + +RPDWV+TSPPYK A +K AL + GVA KL L+FLEP RG WL+ NPP V Sbjct: 90 VEALLGAVELEGCVLDMCGGPGDAIATRLGAT-CKVVTNDISTRLSPGGLPPDTNLDASLASFAVDFLLAKPGQRPDWVLTSPPYKGALEYVKSALSLAAKGVALKLPLSFLEPCADRGGWLQANPPAVCVFF 221
BLAST of mRNA_E-siliculosus-1a_F_contig10215.203.1 vs. uniprot
Match: A0A6H5KU02_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU02_9PHAE) HSP 1 Score: 89.4 bits (220), Expect = 7.680e-19 Identity = 46/102 (45.10%), Postives = 60/102 (58.82%), Query Frame = 1 Query: 151 ADTHLDASTDAFAEAYLE--DTRRPDWVVTSPPYKNAFFILKQALRVGRVGVAFKLRLTFLEPVKSRGRWLKENPPDRIVMLPRATY-RGRKCSSTEAWFVW 447 ADT+LDAS ++F E +L +RP+WVVTSPPY A +K A+ + GV FK+ ++ LEP RG WL+ NPP + L RA Y R E W VW Sbjct: 137 ADTNLDASLESFPEDFLAAYSGKRPEWVVTSPPYSRALTFVKAAMSLATKGVEFKMPISCLEPCADRGGWLQTNPPSVCLFLRRAKYTRANNAKMGEFWGVW 238
BLAST of mRNA_E-siliculosus-1a_F_contig10215.203.1 vs. uniprot
Match: A0A1V5ZCZ4_9BACT (Uncharacterized protein n=1 Tax=Candidatus Hydrogenedentes bacterium ADurb.Bin179 TaxID=1852849 RepID=A0A1V5ZCZ4_9BACT) HSP 1 Score: 75.5 bits (184), Expect = 5.770e-14 Identity = 57/152 (37.50%), Postives = 78/152 (51.32%), Query Frame = 1 Query: 37 DVQGGVLD-CCGAGQDAVSTVLTARGLRVATNDLSPSLVADTHLDASTDAFAEAYLEDTRRPDWVVTSPPYKNAFFILKQALRVGRVGVAFKLRLTFLEPVKSRGRWLKENPPDRI---VMLPRATYR--------GRKCSS---TEAWFVW 447 ++ G +L+ GAGQ ++ L G + TND+ P+ D DA TD FA + DWVVT+PP+ A IL A+ RVGVAF LRL+++EPV +R WL I + PR +R G+K + T AWFVW Sbjct: 26 EINGRILEPTAGAGQ--IARALAGNGRTIFTNDIDPNHGCDFASDA-TDPFAFCWGL-YGGIDWVVTNPPFSLAEDILANAMSYARVGVAFLLRLSYMEPVTTRAAWLNGYADKMIYQGALNPRPHFRKGEINPKTGKKYGTDNVTVAWFVW 173
BLAST of mRNA_E-siliculosus-1a_F_contig10215.203.1 vs. uniprot
Match: A0A6H5L6X2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6X2_9PHAE) HSP 1 Score: 73.2 bits (178), Expect = 6.920e-13 Identity = 44/76 (57.89%), Postives = 48/76 (63.16%), Query Frame = -2 Query: 165 GSITILSGGFSFSHRPLLFTGSRNVSLSLNATPTRPTRNACFKIKNAFL*GGLVTTQSGRRVSSRYASAKASVEAS 392 G T ++ SH PL+ GSR VSLSLNATPTRP A FKI A L GGLVTT SGRR SS+ S SV AS Sbjct: 160 GMTTPVAEAKHLSHCPLVLVGSRKVSLSLNATPTRPILKARFKIAKACLYGGLVTTHSGRRPSSQKVSTNVSVVAS 235
BLAST of mRNA_E-siliculosus-1a_F_contig10215.203.1 vs. uniprot
Match: A0A6H5K2D0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2D0_9PHAE) HSP 1 Score: 65.5 bits (158), Expect = 8.260e-11 Identity = 45/127 (35.43%), Postives = 62/127 (48.82%), Query Frame = 1 Query: 64 CGAGQDAVSTVLTARGLRVATNDLSPSLVADTHLDASTDAFAEAYLE--DTRRPDWVVTSPPYKNAFFILKQALRVGRVGVAFKLRLTFLEPVKSRGRWLKENPPDRIVMLPRATYRGRKCSSTEAW 438 CG DAV+T L + + T D+S ADT+LDAS ++F E +L +RP+WVVTSPPY A +K A+R G+ F R WL N P V + +T R + + W Sbjct: 2 CGGPTDAVATRLRS-ACEIRTKDVSSGRPADTNLDASLESFPEDFLAAYSGKRPEWVVTSPPYSRALTFVKAAMR----GIQ---NAHFFTATLRRPGWLTANEPPVCVFV--STQRKTRMRTMRRW 118
BLAST of mRNA_E-siliculosus-1a_F_contig10215.203.1 vs. uniprot
Match: A0A6H5L1N5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1N5_9PHAE) HSP 1 Score: 62.4 bits (150), Expect = 3.430e-9 Identity = 44/110 (40.00%), Postives = 56/110 (50.91%), Query Frame = 1 Query: 13 VRALLEHVDVQGGVLDCCGAGQDAVSTVLTARGLRVATNDLSPSLVADTHLDASTDAFAEAYLEDT--RRPDWVVTSPPYKNAFFILKQALRVGRVGVAFKLRLTFLEPV 336 V AL V + G VLD CG +DAV A+G T+LDAS F + +++D ++PDWVVTSPPYK + + AL V GVA KL L PV Sbjct: 55 VDALRAAVAITGCVLDMCGGPEDAV-----AQGFGGTC----------TNLDASLVYFPDEFIKDNPGKKPDWVVTSPPYKGSVGFVHAALAVATKGVALKLSLYSWNPV 149 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10215.203.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 11 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10215.203.1 >prot_E-siliculosus-1a_F_contig10215.203.1 ID=prot_E-siliculosus-1a_F_contig10215.203.1|Name=mRNA_E-siliculosus-1a_F_contig10215.203.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=150bp MQFQVRALLEHVDVQGGVLDCCGAGQDAVSTVLTARGLRVATNDLSPSLVback to top mRNA from alignment at E-siliculosus-1a_F_contig10215:887..1781- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig10215.203.1 ID=mRNA_E-siliculosus-1a_F_contig10215.203.1|Name=mRNA_E-siliculosus-1a_F_contig10215.203.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=895bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10215:887..1781- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10215:887..1781- >mRNA_E-siliculosus-1a_F_contig10215.203.1 ID=mRNA_E-siliculosus-1a_F_contig10215.203.1|Name=mRNA_E-siliculosus-1a_F_contig10215.203.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=900bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10215:887..1781- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |