mRNA_E-siliculosus-1a_F_contig10213.202.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10213.202.1 vs. uniprot
Match: D1J765_ECTSI (Uncharacterized protein ycf47 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D1J765_ECTSI) HSP 1 Score: 106 bits (264), Expect = 9.110e-29 Identity = 62/64 (96.88%), Postives = 62/64 (96.88%), Query Frame = 1 Query: 1 LLNILLISIILIRSSNEQSLQENLAPFKFFESSSRAEKSIDKLIQILTILYFIIALIYIIQSYF 192 LLNILLISIILIRS NEQSLQENLAPFKFFESSSRAEKSIDKLIQILTI YFIIALIYIIQSYF Sbjct: 13 LLNILLISIILIRSPNEQSLQENLAPFKFFESSSRAEKSIDKLIQILTIFYFIIALIYIIQSYF 76
BLAST of mRNA_E-siliculosus-1a_F_contig10213.202.1 vs. uniprot
Match: A0A5A4MI59_9PHAE (Uncharacterized protein n=4 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A5A4MI59_9PHAE) HSP 1 Score: 97.8 bits (242), Expect = 2.070e-25 Identity = 53/64 (82.81%), Postives = 60/64 (93.75%), Query Frame = 1 Query: 1 LLNILLISIILIRSSNEQSLQENLAPFKFFESSSRAEKSIDKLIQILTILYFIIALIYIIQSYF 192 LLNILLI +IL+RS NEQSLQENLAPFK FESSSRAEKSIDK IQ+LT+LYF++ALIY+IQSYF Sbjct: 13 LLNILLILVILVRSPNEQSLQENLAPFKLFESSSRAEKSIDKFIQLLTVLYFLLALIYVIQSYF 76
BLAST of mRNA_E-siliculosus-1a_F_contig10213.202.1 vs. uniprot
Match: A0A344PF79_9PHAE (Uncharacterized protein n=1 Tax=Endarachne binghamiae TaxID=698476 RepID=A0A344PF79_9PHAE) HSP 1 Score: 93.6 bits (231), Expect = 9.840e-24 Identity = 52/64 (81.25%), Postives = 60/64 (93.75%), Query Frame = 1 Query: 1 LLNILLISIILIRSSNEQSLQENLAPFKFFESSSRAEKSIDKLIQILTILYFIIALIYIIQSYF 192 +LNILLI IILIRS NEQSLQENLAPF+ FESSSRAEKSIDK+IQ+LTI YF++AL+Y+IQSYF Sbjct: 13 MLNILLILIILIRSPNEQSLQENLAPFRLFESSSRAEKSIDKVIQLLTIGYFLLALLYVIQSYF 76
BLAST of mRNA_E-siliculosus-1a_F_contig10213.202.1 vs. uniprot
Match: A0A0R6LUQ0_UNDPI (Probable protein-export membrane protein SecG n=23 Tax=Laminariales TaxID=2886 RepID=A0A0R6LUQ0_UNDPI) HSP 1 Score: 90.1 bits (222), Expect = 2.320e-22 Identity = 50/64 (78.12%), Postives = 56/64 (87.50%), Query Frame = 1 Query: 1 LLNILLISIILIRSSNEQSLQENLAPFKFFESSSRAEKSIDKLIQILTILYFIIALIYIIQSYF 192 +LN L+ IIL+RS NEQSLQENL PFK FESSSRAEKSIDKLIQILTILYF++AL+Y IQ YF Sbjct: 13 ILNFSLVLIILVRSPNEQSLQENLDPFKLFESSSRAEKSIDKLIQILTILYFVLALVYTIQRYF 76
BLAST of mRNA_E-siliculosus-1a_F_contig10213.202.1 vs. uniprot
Match: A0A6B7EUY5_9PHAE (Uncharacterized protein n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EUY5_9PHAE) HSP 1 Score: 88.6 bits (218), Expect = 8.720e-22 Identity = 52/64 (81.25%), Postives = 55/64 (85.94%), Query Frame = 1 Query: 1 LLNILLISIILIRSSNEQSLQENLAPFKFFESSSRAEKSIDKLIQILTILYFIIALIYIIQSYF 192 LLNILLI IILIRS NEQSLQENL PFK FESS RAE SIDKL+QILTILYF IA+ Y+I SYF Sbjct: 10 LLNILLILIILIRSPNEQSLQENLIPFKLFESSRRAETSIDKLLQILTILYFTIAICYVIGSYF 73
BLAST of mRNA_E-siliculosus-1a_F_contig10213.202.1 vs. uniprot
Match: A0A8F0F7T2_9PHAE (Probable protein-export membrane protein SecG n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0F7T2_9PHAE) HSP 1 Score: 85.1 bits (209), Expect = 2.230e-20 Identity = 48/62 (77.42%), Postives = 53/62 (85.48%), Query Frame = 1 Query: 7 NILLISIILIRSSNEQSLQENLAPFKFFESSSRAEKSIDKLIQILTILYFIIALIYIIQSYF 192 NILLI +IL+RS NEQSLQENL P K FESSS+AEKSIDKLIQIL I YF++AL Y IQSYF Sbjct: 15 NILLILVILVRSPNEQSLQENLDPLKLFESSSKAEKSIDKLIQILAIFYFVLALCYNIQSYF 76
BLAST of mRNA_E-siliculosus-1a_F_contig10213.202.1 vs. uniprot
Match: A0A8F0F9M4_9PHAE (Uncharacterized protein n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0F9M4_9PHAE) HSP 1 Score: 81.3 bits (199), Expect = 7.440e-19 Identity = 45/64 (70.31%), Postives = 53/64 (82.81%), Query Frame = 1 Query: 1 LLNILLISIILIRSSNEQSLQENLAPFKFFESSSRAEKSIDKLIQILTILYFIIALIYIIQSYF 192 +LNI+LI +IL+RS NEQSLQENL PF FESSSRAEKSID+LI+ LT +YF +AL Y IQ YF Sbjct: 13 ILNIVLILVILVRSPNEQSLQENLDPFNLFESSSRAEKSIDRLIKRLTFMYFFLALFYAIQGYF 76
BLAST of mRNA_E-siliculosus-1a_F_contig10213.202.1 vs. uniprot
Match: A0A2R4QPS9_9PHAE (Hypothetical chloroplast protein ycf47 n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QPS9_9PHAE) HSP 1 Score: 80.5 bits (197), Expect = 1.500e-18 Identity = 46/63 (73.02%), Postives = 54/63 (85.71%), Query Frame = 1 Query: 4 LNILLISIILIRSSNEQSLQENLAPFKFFESSSRAEKSIDKLIQILTILYFIIALIYIIQSYF 192 +NI+LI IILIRS NEQSLQENL PFKFFESSS+AE ID LIQIL +LYF +AL+Y I++YF Sbjct: 14 INIILIFIILIRSPNEQSLQENLDPFKFFESSSKAEIFIDNLIQILVVLYFSLALLYNIKNYF 76
BLAST of mRNA_E-siliculosus-1a_F_contig10213.202.1 vs. uniprot
Match: A0A141BSB1_9PHAE (Probable protein-export membrane protein SecG n=14 Tax=Sargassaceae TaxID=3014 RepID=A0A141BSB1_9PHAE) HSP 1 Score: 76.6 bits (187), Expect = 4.640e-17 Identity = 44/63 (69.84%), Postives = 52/63 (82.54%), Query Frame = 1 Query: 1 LLNILLISIILIRSSNEQSLQENLAPFKFFESSSRAEKSIDKLIQILTILYFIIALIYIIQSY 189 ++N L+ IILIRS NEQSLQENL PFK FESSS+AE SID LI+ILTI+YF IAL Y I++Y Sbjct: 10 IVNFFLVLIILIRSPNEQSLQENLDPFKIFESSSKAENSIDNLIKILTIIYFSIALAYNIKNY 72
BLAST of mRNA_E-siliculosus-1a_F_contig10213.202.1 vs. uniprot
Match: A0A1I9LVL0_9PHAE (Uncharacterized protein n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVL0_9PHAE) HSP 1 Score: 76.3 bits (186), Expect = 7.120e-17 Identity = 45/63 (71.43%), Postives = 51/63 (80.95%), Query Frame = 1 Query: 4 LNILLISIILIRSSNEQSLQENLAPFKFFESSSRAEKSIDKLIQILTILYFIIALIYIIQSYF 192 LNILLISIILIRS NE SL+ENL PF FF SSS AEKSID LI +L YF++ALI+IIQ +F Sbjct: 14 LNILLISIILIRSPNEISLKENLTPFNFFASSSSAEKSIDNLIIVLITFYFLLALIHIIQGFF 76 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10213.202.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 14 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10213.202.1 >prot_E-siliculosus-1a_F_contig10213.202.1 ID=prot_E-siliculosus-1a_F_contig10213.202.1|Name=mRNA_E-siliculosus-1a_F_contig10213.202.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=65bp LLNILLISIILIRSSNEQSLQENLAPFKFFESSSRAEKSIDKLIQILTILback to top mRNA from alignment at E-siliculosus-1a_F_contig10213:2434..2628- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig10213.202.1 ID=mRNA_E-siliculosus-1a_F_contig10213.202.1|Name=mRNA_E-siliculosus-1a_F_contig10213.202.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=195bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10213:2434..2628- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10213:2434..2628- >mRNA_E-siliculosus-1a_F_contig10213.202.1 ID=mRNA_E-siliculosus-1a_F_contig10213.202.1|Name=mRNA_E-siliculosus-1a_F_contig10213.202.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=390bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10213:2434..2628- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |