mRNA_E-siliculosus-1a_F_contig10213.201.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10213.201.1 vs. uniprot
Match: D1J767_ECTSI (50S ribosomal protein L19, chloroplastic n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D1J767_ECTSI) HSP 1 Score: 224 bits (571), Expect = 7.320e-74 Identity = 116/120 (96.67%), Postives = 120/120 (100.00%), Query Frame = 1 Query: 1 TFMNNQFIESVEKIYIKKNLKKLFVGDTVKVGVFVEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIGIERAFLVNSPKLASIEILKSARVRRSKLYYLRNIIGKAGRLKQRVKKK 360 TFMNN+FIESVEK+YIKKNLKKLFVGDTVK+GVFVEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIGIERAFLVNSPKLASIEILKSARVR+SKLYYLRNIIGKAGRLKQRVKKK Sbjct: 11 TFMNNRFIESVEKVYIKKNLKKLFVGDTVKIGVFVEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIGIERAFLVNSPKLASIEILKSARVRKSKLYYLRNIIGKAGRLKQRVKKK 130
BLAST of mRNA_E-siliculosus-1a_F_contig10213.201.1 vs. uniprot
Match: A0A1I9LVW4_9PHAE (50S ribosomal protein L19, chloroplastic n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVW4_9PHAE) HSP 1 Score: 213 bits (541), Expect = 3.570e-69 Identity = 107/119 (89.92%), Postives = 117/119 (98.32%), Query Frame = 1 Query: 4 FMNNQFIESVEKIYIKKNLKKLFVGDTVKVGVFVEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIGIERAFLVNSPKLASIEILKSARVRRSKLYYLRNIIGKAGRLKQRVKKK 360 F+NN+FIESVEK++IKKNLKKLFVGDTVKVGVFVEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIG+ERAFLVNSPK ASIE++KS+R+RRSKLYYLRNIIGKAGRLK+R KKK Sbjct: 20 FINNRFIESVEKVHIKKNLKKLFVGDTVKVGVFVEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIGVERAFLVNSPKFASIEVIKSSRIRRSKLYYLRNIIGKAGRLKERFKKK 138
BLAST of mRNA_E-siliculosus-1a_F_contig10213.201.1 vs. uniprot
Match: A0A6B7EVN0_9PHAE (50S ribosomal protein L19 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EVN0_9PHAE) HSP 1 Score: 206 bits (524), Expect = 1.070e-66 Identity = 104/119 (87.39%), Postives = 115/119 (96.64%), Query Frame = 1 Query: 4 FMNNQFIESVEKIYIKKNLKKLFVGDTVKVGVFVEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIGIERAFLVNSPKLASIEILKSARVRRSKLYYLRNIIGKAGRLKQRVKKK 360 FMNN+FI+SVEK+++KK+LKKLFVGDTVKVGVFVEEGNKERVQFYEGIILAKSKSCINFTIS+RKVFQGIG+ERAFLVNSPK ASIE+LKS+RV +SKLYYLRNIIGKAGRLKQR KK Sbjct: 12 FMNNRFIKSVEKVHMKKDLKKLFVGDTVKVGVFVEEGNKERVQFYEGIILAKSKSCINFTISIRKVFQGIGVERAFLVNSPKFASIEVLKSSRVSKSKLYYLRNIIGKAGRLKQRFNKK 130
BLAST of mRNA_E-siliculosus-1a_F_contig10213.201.1 vs. uniprot
Match: A0A7T8JK70_SCYLO (50S ribosomal protein L19, chloroplastic n=5 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A7T8JK70_SCYLO) HSP 1 Score: 197 bits (502), Expect = 4.350e-63 Identity = 100/119 (84.03%), Postives = 112/119 (94.12%), Query Frame = 1 Query: 4 FMNNQFIESVEKIYIKKNLKKLFVGDTVKVGVFVEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIGIERAFLVNSPKLASIEILKSARVRRSKLYYLRNIIGKAGRLKQRVKKK 360 FMNN+ IESVE++++K+NLK+LFVGDTVKVG+ VEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIG+ERAFLVNSPK SIE+LKSARV +SKLYYLRNIIGKAGRLKQ KK+ Sbjct: 30 FMNNKLIESVEQVHMKENLKELFVGDTVKVGISVEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIGVERAFLVNSPKFVSIEVLKSARVSKSKLYYLRNIIGKAGRLKQSFKKR 148
BLAST of mRNA_E-siliculosus-1a_F_contig10213.201.1 vs. uniprot
Match: A0A0R6LUN6_UNDPI (50S ribosomal protein L19, chloroplastic n=25 Tax=Laminariales TaxID=2886 RepID=A0A0R6LUN6_UNDPI) HSP 1 Score: 169 bits (429), Expect = 3.010e-52 Identity = 83/121 (68.60%), Postives = 106/121 (87.60%), Query Frame = 1 Query: 1 TFMNN-QFIESVEKIYIKKNLKKLFVGDTVKVGVFVEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIGIERAFLVNSPKLASIEILKSARVRRSKLYYLRNIIGKAGRLKQRVKKK 360 TF+N+ + I+SVE ++IKKNL K+FVGDTVK+GVF++EGNKER+Q+Y+GIIL K+ S IN TISVRKVFQGIG+ER FL++SPK SIE++KS+RVRRSKLYYLR+I+GK RLKQR + K Sbjct: 8 TFLNDKELIDSVESVHIKKNLSKIFVGDTVKIGVFIKEGNKERIQYYQGIILGKNNSGINLTISVRKVFQGIGVERNFLIHSPKFESIEVIKSSRVRRSKLYYLRSIVGKGSRLKQRFRTK 128
BLAST of mRNA_E-siliculosus-1a_F_contig10213.201.1 vs. uniprot
Match: A0A8F0JYX3_9PHAE (Ribosomal protein L19 n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0JYX3_9PHAE) HSP 1 Score: 166 bits (420), Expect = 7.540e-51 Identity = 83/115 (72.17%), Postives = 100/115 (86.96%), Query Frame = 1 Query: 16 QFIESVEKIYIKKNLKKLFVGDTVKVGVFVEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIGIERAFLVNSPKLASIEILKSARVRRSKLYYLRNIIGKAGRLKQRVKKK 360 + ++SVE Y KKNL ++FVGDT+KVGVF++EGNKERVQ+Y+GIIL K+ S IN TISVRKVFQGIG+ER FLV+SPKL SIE++KS+RVRRSKLYYLRNIIGK RLKQR + K Sbjct: 16 KIMDSVESAYKKKNLSQIFVGDTIKVGVFIKEGNKERVQYYQGIILGKNNSGINLTISVRKVFQGIGVERKFLVHSPKLESIEVIKSSRVRRSKLYYLRNIIGKGSRLKQRFRTK 130
BLAST of mRNA_E-siliculosus-1a_F_contig10213.201.1 vs. uniprot
Match: A0A8F0F7M0_9PHAE (Ribosomal protein L19 n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0F7M0_9PHAE) HSP 1 Score: 160 bits (405), Expect = 1.450e-48 Identity = 77/115 (66.96%), Postives = 99/115 (86.09%), Query Frame = 1 Query: 16 QFIESVEKIYIKKNLKKLFVGDTVKVGVFVEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIGIERAFLVNSPKLASIEILKSARVRRSKLYYLRNIIGKAGRLKQRVKKK 360 + ++ VE YIKK++ K+FVGDTVK+GVF++EGNKER+Q+Y+GIIL K+ S +N TISVRKVFQGIG+ER FL++SPK SIEI+KS+RVRRSKLYYLR+I+GK RLKQR + K Sbjct: 16 KIMDFVESTYIKKDVSKIFVGDTVKIGVFIKEGNKERIQYYQGIILGKNNSGVNLTISVRKVFQGIGVERRFLIHSPKFESIEIIKSSRVRRSKLYYLRSIVGKGSRLKQRFRTK 130
BLAST of mRNA_E-siliculosus-1a_F_contig10213.201.1 vs. uniprot
Match: A0A141BSB2_9PHAE (50S ribosomal protein L19, chloroplastic n=1 Tax=Sargassum horneri TaxID=74089 RepID=A0A141BSB2_9PHAE) HSP 1 Score: 149 bits (377), Expect = 3.000e-44 Identity = 77/111 (69.37%), Postives = 92/111 (82.88%), Query Frame = 1 Query: 31 VEKIYIKKNLKKLFVGDTVKVGVFVEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIGIERAFLVNSPKLASIEILKSARVRRSKLYYLRNIIG-KAGRLKQRVKKK 360 VE+ YIKKN+ K+FVGDTVK+GV ++EGNKER+Q+Y+GIILAK+ S IN TISVRK+FQGIGIER FL++SPK S+EI+KSARVRRSKLYYLR K RLKQR K Sbjct: 24 VEQTYIKKNIPKVFVGDTVKIGVLIKEGNKERIQYYQGIILAKTNSGINLTISVRKIFQGIGIERKFLIHSPKFESVEIIKSARVRRSKLYYLRKTTTTKGSRLKQRFNTK 134
BLAST of mRNA_E-siliculosus-1a_F_contig10213.201.1 vs. uniprot
Match: A0A8F0FAK4_9PHAE (Ribosomal protein L19 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FAK4_9PHAE) HSP 1 Score: 149 bits (375), Expect = 5.330e-44 Identity = 73/117 (62.39%), Postives = 94/117 (80.34%), Query Frame = 1 Query: 10 NNQFIESVEKIYIKKNLKKLFVGDTVKVGVFVEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIGIERAFLVNSPKLASIEILKSARVRRSKLYYLRNIIGKAGRLKQRVKKK 360 + + I VE+ KK++ K+FVGDTVK+G+ ++EGNKER+Q+Y+GIIL K S IN ISVRKVFQGIG+ER FL++SPK SI ++KS+RVRRSKLYYLRNIIGK RLK+R + K Sbjct: 14 SEKIINLVEEAQKKKDIPKIFVGDTVKIGILIKEGNKERIQYYQGIILGKKNSGINLMISVRKVFQGIGVERNFLIHSPKFESITVIKSSRVRRSKLYYLRNIIGKKSRLKERFRNK 130
BLAST of mRNA_E-siliculosus-1a_F_contig10213.201.1 vs. uniprot
Match: A0A8F5PLI7_9STRA (50S ribosomal protein L19, chloroplastic n=4 Tax=Chaetoceros TaxID=49237 RepID=A0A8F5PLI7_9STRA) HSP 1 Score: 146 bits (369), Expect = 3.210e-43 Identity = 74/113 (65.49%), Postives = 94/113 (83.19%), Query Frame = 1 Query: 16 QFIESVEKIYIKKNLKKLFVGDTVKVGVFVEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIGIERAFLVNSPKLASIEILKSARVRRSKLYYLRNIIGKAGRLKQRVK 354 Q IE++ K ++KK+L K+ +GD+VK+GV + EGNKERVQFYEG I+AK S IN TI+VRKV QGIGIER FL++SPK+ SIE+L+S++VRRSKLYYLRN+ GKA RLKQ K Sbjct: 8 QTIENLHKHFLKKDLPKISIGDSVKIGVKIIEGNKERVQFYEGTIIAKKNSSINTTITVRKVLQGIGIERIFLIHSPKIDSIEVLRSSKVRRSKLYYLRNLKGKASRLKQAFK 120 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10213.201.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10213.201.1 >prot_E-siliculosus-1a_F_contig10213.201.1 ID=prot_E-siliculosus-1a_F_contig10213.201.1|Name=mRNA_E-siliculosus-1a_F_contig10213.201.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=119bp MNNQFIESVEKIYIKKNLKKLFVGDTVKVGVFVEEGNKERVQFYEGIILAback to top mRNA from alignment at E-siliculosus-1a_F_contig10213:582..944+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig10213.201.1 ID=mRNA_E-siliculosus-1a_F_contig10213.201.1|Name=mRNA_E-siliculosus-1a_F_contig10213.201.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=363bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10213:582..944+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10213:582..944+ >mRNA_E-siliculosus-1a_F_contig10213.201.1 ID=mRNA_E-siliculosus-1a_F_contig10213.201.1|Name=mRNA_E-siliculosus-1a_F_contig10213.201.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=714bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10213:582..944+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |