mRNA_E-siliculosus-1a_F_contig1020.196.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1020.196.1 vs. uniprot
Match: D8LQ91_ECTSI (Lipase_3 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ91_ECTSI) HSP 1 Score: 679 bits (1753), Expect = 3.640e-240 Identity = 372/425 (87.53%), Postives = 376/425 (88.47%), Query Frame = 1 Query: 1 GHSLGAGTAILLKILLERNATEALMRGFRLAKDKTAAKTARLDVGRPVRVECYAFAPPPVFSVPGATWMRDVYSFVNG---------------------ADCVPTMSLGSLYSLCRTIQHVDKLPLDVYKRAEFVLDSRVRVQQSEQGLGAAGNEDGRRKIASDILGLREHPSLAFLAGDAYDISDDEYDXXXXXXXXXXXXXXXXXXXXXXXXXXATEENEDSTSIGSYLSAIRAQVVRSTISKFGEEWARFTQDVGEATESLLAAVNTAGSSAESLYKDVSRVTDGVRSMSSDEVALTLLLLKQLAAGGGPSPDEMLPMVERCEREGVRPQGGKRRSSDTMTVGDLIIPGVVFLLEGWDAGSESSAGKDGLVTVRKTSAEELGGIRLNSSMMADHAMGAYEPAILGAALKYRKRKRQADRKGH 1212
GHSLGAGTAILLKILLERNA EAL GFRLAKDKTAAKTARLDVGRPVRVECYAFAPPPVFSVPGATWMRDVYSFVNG ADCVPTMSLGSLYSLCRTIQHVDKLPLDVYKRAEFVLDSRVRVQQSEQGLGAAGNED RRKIASDILGLR HPSLAFLAGDAYDI+DDEYDXXXXXXX TEE EDSTSIGSYLSAIRAQVVRSTISKFG+EWARFTQDVGEATESLLAAVNTAGSSAESLYKDVSRVTDGVRSMSSDEVALTLLLLKQLA GGGPSPDEMLPMVERCEREGVRP+GGKRRSSDTMTVGDLI PGVVFLLEGWDAGSESSAGKDGLVTVRKTS+EELGGIRLNSSMMADHAMGAYEPAILGAALKYRKRKRQADRKGH
Sbjct: 276 GHSLGAGTAILLKILLERNAMEALKGGFRLAKDKTAAKTARLDVGRPVRVECYAFAPPPVFSVPGATWMRDVYSFVNGLMQHPLSRAIARRWFWRRHDRADCVPTMSLGSLYSLCRTIQHVDKLPLDVYKRAEFVLDSRVRVQQSEQGLGAAGNEDDRRKIASDILGLRAHPSLAFLAGDAYDIADDEYDXXXXXXXAGSKLPEEVIGGEQGEDQ-GTEEKEDSTSIGSYLSAIRAQVVRSTISKFGQEWARFTQDVGEATESLLAAVNTAGSSAESLYKDVSRVTDGVRSMSSDEVALTLLLLKQLATGGGPSPDEMLPMVERCEREGVRPKGGKRRSSDTMTVGDLINPGVVFLLEGWDAGSESSAGKDGLVTVRKTSSEELGGIRLNSSMMADHAMGAYEPAILGAALKYRKRKRQADRKGH 699
BLAST of mRNA_E-siliculosus-1a_F_contig1020.196.1 vs. uniprot
Match: A0A7S1AQP4_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1AQP4_NOCSC) HSP 1 Score: 65.1 bits (157), Expect = 7.950e-8 Identity = 43/132 (32.58%), Postives = 70/132 (53.03%), Query Frame = 1 Query: 1 GHSLGAGTAILLKILLERNATEALMRGFRLAKDKTAAKTARLDVGRPVRVECYAFAPPPVFSVPGAT--WMR-DVYSFVNGADCVPTMSLGSLYSLCRTIQHVDKLPLDVYKRAEFVL--DSRVRVQQSEQG 381
GHSLGAGTA+L+ ++L + G+ +A GR C+AFA PPVF P W ++++FV+ D +P + L +++SLC+ + VD++ + +RA F+ D+ RVQ + G
Sbjct: 217 GHSLGAGTAVLVMLMLCGES------GY----------SAPFSAGR--NTTCWAFAAPPVFGPPEKIPRWTSSNIFAFVHHVDMIPRLGLAAVFSLCQAEKIVDEMDISASERASFLFNYDTSFRVQLPDHG 330
BLAST of mRNA_E-siliculosus-1a_F_contig1020.196.1 vs. uniprot
Match: A0A553P330_TIGCA (Lipase_3 domain-containing protein n=1 Tax=Tigriopus californicus TaxID=6832 RepID=A0A553P330_TIGCA) HSP 1 Score: 60.1 bits (144), Expect = 4.260e-6 Identity = 47/156 (30.13%), Postives = 73/156 (46.79%), Query Frame = 1 Query: 1 GHSLGAGTAILLKILLERNATEALMRGFRLAKDKTAAKTARLDVGRPVRVECYAFAPPPVFSVPGATW--MRDVYS-FVNGADCVPTMSLGSLYSLCRTIQHVDKLPLDVYKRAEFVLDSRVRVQQSEQGLGAAGNEDGRRKIASDILGLREHPSL 459
GHSLGAGTA LL +++ + K+K K ++C A APPPV+ M+D + ++N DCVP M LGS+ L ++ VDKL ++ KR +F + +++Q A + ++I D EHP +
Sbjct: 392 GHSLGAGTAELLTMVILKE------------KEKYVPKE--------TEIQCVAIAPPPVYRTDSQVPKDMKDAINIYINNQDCVPRMCLGSIAKLLAMVRAVDKLNIE--KRDQFKVFIGYDDDETKQNF--ARIQSVIQEIKQDRFPFLEHPGI 523 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1020.196.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1020.196.1 >prot_E-siliculosus-1a_F_contig1020.196.1 ID=prot_E-siliculosus-1a_F_contig1020.196.1|Name=mRNA_E-siliculosus-1a_F_contig1020.196.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=405bp GHSLGAGTAILLKILLERNATEALMRGFRLAKDKTAAKTARLDVGRPVRVback to top mRNA from alignment at E-siliculosus-1a_F_contig1020:36613..38861- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1020.196.1 ID=mRNA_E-siliculosus-1a_F_contig1020.196.1|Name=mRNA_E-siliculosus-1a_F_contig1020.196.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2249bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1020:36613..38861- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1020:36613..38861- >mRNA_E-siliculosus-1a_F_contig1020.196.1 ID=mRNA_E-siliculosus-1a_F_contig1020.196.1|Name=mRNA_E-siliculosus-1a_F_contig1020.196.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2430bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1020:36613..38861- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |