mRNA_E-siliculosus-1a_F_contig1020.195.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1020.195.1 vs. uniprot
Match: A0A6H5JPX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPX7_9PHAE) HSP 1 Score: 1392 bits (3602), Expect = 0.000e+0 Identity = 957/1301 (73.56%), Postives = 986/1301 (75.79%), Query Frame = 3 Query: 876 MLFLALWGIVLMAGAALWVRSEPMRTTLLPPHPPAELTGSRFPRRGGAAQLWAAAAAEVESDDGKGAVGGGHREGESTVAVSARKWRDLAVLLALAPPALDATAQFCFLRLAARSCSAWLAVGLFVASVVYACLVGAAVVVAGVAELKGGEGKLRCLVASWHALLLLTAVGALSQQQWDRTVVRQGLGSVLLSLAAWQLGGLSARRVEGAVRYGLVATVQKALGEASNHEL------------------------------------------------SPESLLELAAGRWLVEYWSQPPTFSAPEVREMLVQAVSSIARERLLGSTSRRGGXXXXXXXXXXRGRSSGDTQDTFVKDGVRDSPELTEAPSPAGGVEALTGWLEGRGSEPPVPKLWRPVETPASASPGWVLVSSEAPLLLRACPTLCASVFLLLRSLVGGAPWMEWAFLLALAGPAAVEVWRLRVLRKE-------------------------------------------------------------------------LTRKKRDHGAPXXXXXXXXXXXXXXXXXXXDRLSLLLRESNPPLENVWKNAARLAEKLGEDPAGGGG-GRPSLRVVDRVVAGVAMTGAADAPRASSPEAASTVPKNSLPVGRDKADIFRAGLTARIGAERVLGGRPRLLKDYLAYSRPRSADSPAYPGRFTGSRTNNSLGLGLARPLAGSSGSLTXXXXXXXXXXXXXXXXXXXXXXXXXXGVSAGIEEGRSARASSAPAETAAAEDTEAAVPPSPPQEAAVAVSGGVRVSEEAMAALPSATSPAPSAXXXXXXSPPSRCSADREEPTAAALPAADAGAGVIEACADAATEAMPVRGDPGDDDAWDLFGATWAGTVVGAAGELXXXXXXXXGGALGSVPVLGGVLEWWGGGGSPEKAEDSVSGCGDSEALAADKDGTVDXXXXXXXXXXXXXXAANMSRGXXXXXXXVESSGRRAGSSDHSGSESVGALSKAAEGSCGGTNTCMLDNAAESTGQEQGGVLVEDEAPPVADDAPGSTRQPAEAKNPRVGAPTSIGSAGSEEDFDCDDGGSENEDRREKQRPTSASLSPLYTINDTPTTSSKGPAQLPPGDDVTNGDGQXXXXXXXXXXXXXXXXXXXXXXXXRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERGETDAAESMEATQLVAPEITGVESEGKAQEAGSGPHGLTGMVWWTVSRAVEFAGGAASGFLPGFQDAKEAGGERGGEEDDTKEASGEQ 4412
MLFLALWGIVL+AGAALWVRSEPMRTTLLP +P +ELTGSRF RRGGAAQLWAAAA EVESDDGKGAVGGG+ EGESTVA SARKWRDL VLLALAPPALDATAQFCFLR+AARSCSAWLAVGLF+AS VYACLVGA+VV+AGVAELKGGEGK RCLVASWHALLLLTAVG LSQQQWDRTVVRQGLGS+LLSLAAWQLGGLSARRVEGAVRY LV TVQKALGEASNHE+ SPESLLELAAGRWL+EYWSQPPTFSA E+REMLVQAVSSI RERL+GSTS RG XXXXXXXXXXRGRSSGD DTFVKDGVRDSPELTEAPSP GVEALTGWLEGRGSEPPVP+ WRPVET ASASPGWVLVSSEAPLLLRACPT CAS FLLLRSLVGGA WMEWAFLLALAGPAAVE+WRLRVLRKE LTRKKRDHG P XX DRLSLLLRESNPPLENVWKNAARLAEKLGEDPAGGGG GRPS RVVDRVVAGVA++GA DAPR S PEAAS VPK+SLPV RDKADIFRA L ARIGAERVLGGRPRLLKDYLA+SRPRSA+SPAYPGRFTGSRTNNSLGLGL RPLAGS GSL GVSAG EEGRSARASSAPAETAAAEDTEAA P SPP+EAAVAVSGG +VSEEAMAA PSATSP PSA SPPSRCSAD EEPTAAALPAAD A A+PVRGDPGDDDAWDLFGATWAGTVVGAAGELXXXXXXXXGGALGSVPVLGGVLEW EALAA+KD TVD XXXXX AAN+SRGXXXXXXX RRAGSSDHSG ESVGALSKAAEGS GG +T L A ESTGQEQGG+LVEDEA VADDAPG+ RQPAEAKNP P S G AGSEEDFDCDDGGSENEDRREKQRPTSASLSPL TI D XXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERGETDA ESM ATQ+ APEITGVESEGKAQEAGSGPHGLTGM WWTVSRAVEFAGGAA GFLPGFQDAKEAGGERGGE DDTKEASGEQ
Sbjct: 1 MLFLALWGIVLLAGAALWVRSEPMRTTLLP-YPASELTGSRFRRRGGAAQLWAAAA-EVESDDGKGAVGGGNHEGESTVAESARKWRDLVVLLALAPPALDATAQFCFLRMAARSCSAWLAVGLFIASTVYACLVGASVVLAGVAELKGGEGKFRCLVASWHALLLLTAVGTLSQQQWDRTVVRQGLGSMLLSLAAWQLGGLSARRVEGAVRYSLVVTVQKALGEASNHEVIAALEVVCLSFSLPALTAEPPYPWPNHPPSGQPRPKHATHKHPCIEKFSPESLLELAAGRWLIEYWSQPPTFSALELREMLVQAVSSITRERLVGSTSGRGXXXXXXXXXXXRGRSSGDMHDTFVKDGVRDSPELTEAPSPGRGVEALTGWLEGRGSEPPVPRFWRPVETLASASPGWVLVSSEAPLLLRACPTSCASAFLLLRSLVGGASWMEWAFLLALAGPAAVELWRLRVLRKEVGAVALPPQQKMFLTKRKGSGRGHTDPNPTPQLNRFYVSSSVTGAPSGWLVANMVSNLPLPNRVGAVLSSLQQLTRKKRDHG-PLQPPPXXLPRRTQAAGAAGDRLSLLLRESNPPLENVWKNAARLAEKLGEDPAGGGGDGRPSPRVVDRVVAGVAVSGATDAPRVSCPEAASAVPKSSLPVDRDKADIFRADLAARIGAERVLGGRPRLLKDYLAFSRPRSAESPAYPGRFTGSRTNNSLGLGLTRPLAGSPGSLNGATATAVAPTAAPAPTAGDDAGVGLGGVSAGTEEGRSARASSAPAETAAAEDTEAAAPLSPPEEAAVAVSGGAQVSEEAMAAWPSATSPVPSASPPPL-SPPSRCSADGEEPTAAALPAADTAAXXXXXXXXXXXXAIPVRGDPGDDDAWDLFGATWAGTVVGAAGELXXXXXXXXGGALGSVPVLGGVLEWXXXXXXXXXXXXXXXXXXXCEALAAEKDSTVDGAIDGVTIXXXXXGAANVSRGXXXXXXXXXXXARRAGSSDHSGIESVGALSKAAEGSSGGADTGELHKAGESTGQEQGGLLVEDEASSVADDAPGTARQPAEAKNPSASTPISNGDAGSEEDFDCDDGGSENEDRREKQRPTSASLSPLCTI-DXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERGETDAVESMAATQIAAPEITGVESEGKAQEAGSGPHGLTGMAWWTVSRAVEFAGGAAYGFLPGFQDAKEAGGERGGEGDDTKEASGEQ 1296
BLAST of mRNA_E-siliculosus-1a_F_contig1020.195.1 vs. uniprot
Match: D8LQ90_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ90_ECTSI) HSP 1 Score: 1135 bits (2937), Expect = 0.000e+0 Identity = 765/1186 (64.50%), Postives = 782/1186 (65.94%), Query Frame = 3 Query: 876 MLFLALWGIVLMAGAALWVRSEPMRTTLLPPHPPAELTGSRFPRRGGAAQLWAAAAAEVESDDGKGAVGGGHREGESTVAVSARKWRDLAVLLALAPPALDATAQFCFLRLAARSCSAWLAVGLFVASVVYACLVGAAVVVAGVAELKGGEGKLRCLVASWHALLLLTAVGALSQQQWDRTVVRQGLGSVLLSLAAWQLGGLSARRVEGAVRYGLVATVQKALGEASNHE-LSPESLLELAAGRWLVEYWSQPPTFSAPEVREMLVQAVSSIARERLLGSTSRRGGXXXXXXXXXXRGRSSGDTQDTFVKDGVRDSPELTEAPSPAGGVEALTGWLEGRGSEPPVPKLWRPVETPASASPGWVLVSSEAPLLLRACPTLCASVFLLLRSLVGGAPWMEWAFLLALAGPAAVEVWRLRVLRKELTRKKRDHGAPXXXXXXXXXXXXXXXXXXXDRLSLLLRESNPPLENVWKNAARLAEKLGEDPAGGGGGR-------PSLRVVDRVVAGVAMTGAADAPRASSPEAASTVPKNSLPVGRDKADIFRAGLTARIGAERVLGGRPRLLKDYLAYSRPRSADSPAYPGRFTGSRTNNSLGLGLARPLAGSSGSLTXXXXXXXXXXXXXXXXXXXXXXXXXXGVSAGIEEGRSARASSAPAETAAAEDTEAAVPPSPPQEAAVAVSGGVRVSEEAMAALPSATSPAPSAXXXXXXSPPSRCSADREEPTAAALPAADAGAGVIEACADAATEAMPVRGDPGDDDAWDLFGATWAGTVVGAAGELXXXXXXXXGGALGSVPVLGGVLEWWGGGGSPEKAEDSVSGCGDSEALAADKDGTVDXXXXXXXXXXXXXXAANMSRGXXXXXXXVESSGRRAGSSDHSGSESVGALSKAAEGSCGGTNTCMLDNAAESTGQEQGGVLVEDEAPPVADDAPGSTRQPAEAKNPRVGAPTSIGSAGSEEDFDCDDGGSENEDRREKQRPTSASLSPLYTINDTPTTSSKGPAQLPPGDDVTNGDGQXXXXXXXXXXXXXXXXXXXXXXXXRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERGETDAAESMEATQLVAPEITGVESEGKAQEAGSGPHGLTGMVWWTVSRAVEFAGGAASGFLPGFQDAKEAGGERGGEEDDTKEASGE 4409
MLFLALWGIVL+AGAALWVRSEPMRTTL VESDDGKG VGGGHREGEST AVSARKWRDL VLLALAPPALDATAQFCFLRLAARSCSAWLAVGLF+AS VYACLVGA+VVVAGVAELKGGE K RCLVASWHALLLLTAVGALSQQQWDRTVVRQGLGSVLLSLAAWQLGGLSARRVEGAVRYGLVATVQKALGEASNHE LSPESLLELAAGRWLVEYWSQPPTFSAPEVREMLVQAVSSIARERLLGSTSRRGGXXXXXXXXX RGRSSGD QDTFVKDGVRDSPEL+EAPSPAGGVEALTGWLEGRGSEPPVPKLW PVE PASASPGWVLVSSEAPLL RACPTLCASVFLLLRSLVGGAPWMEWAFL+ALAGPAAVEVWRLRVLRKELTRKKRDH XXXXXXXXXXXXXXX DRLSLLLRESNPPLENVWKNA RLAEKLGEDPAGG PS RVVDRV AGVAMTGAADAPRAS PEAA TVPK+SLPVGRD+ADIFRAGL ARIGAERVLGGRPRLLKDYLAYSRPRSADSPAYPGRFTGSRTNNSLGLGLARPLAGSSGSLT G +A +A A TAA + T +GG A IEA ADAATEA+PVRGDPGDDDAWDLFGATWAGTVVGAAGELXXXXXXXXGGALGSVPVLGGVLEW EALAA KDGTVDXXXXXXXXXXXXXXAAN+SRGXXXXXXX GRRAGSSDHS SESVGALSKA EGS GG NT L + +E+G RGETDAA SMEATQLVAPE+TGVESEGK QEAGSGPHGLTGM WWTVSRAVEFAGGAA GFLPGFQDAKEAGGERGGE DDTKEASGE
Sbjct: 1 MLFLALWGIVLLAGAALWVRSEPMRTTLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVESDDGKGVVGGGHREGESTAAVSARKWRDLVVLLALAPPALDATAQFCFLRLAARSCSAWLAVGLFIASTVYACLVGASVVVAGVAELKGGEAKFRCLVASWHALLLLTAVGALSQQQWDRTVVRQGLGSVLLSLAAWQLGGLSARRVEGAVRYGLVATVQKALGEASNHEKLSPESLLELAAGRWLVEYWSQPPTFSAPEVREMLVQAVSSIARERLLGSTSRRGGXXXXXXXXX-RGRSSGDIQDTFVKDGVRDSPELSEAPSPAGGVEALTGWLEGRGSEPPVPKLWHPVENPASASPGWVLVSSEAPLLWRACPTLCASVFLLLRSLVGGAPWMEWAFLVALAGPAAVEVWRLRVLRKELTRKKRDHRXXXXXXXXXXXXXXXXXAA--DRLSLLLRESNPPLENVWKNAVRLAEKLGEDPAGGXXXXXXXXXXSPSPRVVDRVDAGVAMTGAADAPRASRPEAALTVPKSSLPVGRDQADIFRAGLAARIGAERVLGGRPRLLKDYLAYSRPRSADSPAYPGRFTGSRTNNSLGLGLARPLAGSSGSLT--------------------------GATA-----------TAVAPTAAPDPT----------------AGGXXXXXXXXA---------------------------------------------IEASADAATEAIPVRGDPGDDDAWDLFGATWAGTVVGAAGELXXXXXXXXGGALGSVPVLGGVLEWXXXXXXXXXXXXXXXXXXGCEALAAKKDGTVDXXXXXXXXXXXXXXAANVSRGXXXXXXXXXXXGRRAGSSDHSRSESVGALSKAVEGSSGGNNTVSL-----AAREEEG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RGETDAAASMEATQLVAPEVTGVESEGKTQEAGSGPHGLTGMAWWTVSRAVEFAGGAAYGFLPGFQDAKEAGGERGGEGDDTKEASGE 897 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1020.195.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1020.195.1 >prot_E-siliculosus-1a_F_contig1020.195.1 ID=prot_E-siliculosus-1a_F_contig1020.195.1|Name=mRNA_E-siliculosus-1a_F_contig1020.195.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=1395bp MEVGRFHDDDSSLHHARFDQGNMTSPLVDSRRSSTPAEAERSTPSAGAQPback to top mRNA from alignment at E-siliculosus-1a_F_contig1020:22330..35529- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1020.195.1 ID=mRNA_E-siliculosus-1a_F_contig1020.195.1|Name=mRNA_E-siliculosus-1a_F_contig1020.195.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=13200bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1020:22330..35529- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1020:22330..35529- >mRNA_E-siliculosus-1a_F_contig1020.195.1 ID=mRNA_E-siliculosus-1a_F_contig1020.195.1|Name=mRNA_E-siliculosus-1a_F_contig1020.195.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=8370bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1020:22330..35529- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |