mRNA_E-siliculosus-1a_F_contig1020.193.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1020.193.1 vs. uniprot
Match: D8LQ88_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ88_ECTSI) HSP 1 Score: 305 bits (780), Expect = 9.200e-99 Identity = 154/163 (94.48%), Postives = 156/163 (95.71%), Query Frame = 1 Query: 187 MTTSRGGCWSTLIEEESGCQTCIVQATSSSTTATDDPPAAQWNSSVFSTFFEMELDPCPESVSDIYGTPPGGVVSYQEVLSADCRDSDXXXXXXXXXXSVWLAFENSCYSKSSYLDAAVNWEDADARCGEVGARLVSLESEAENDFVTHNLLWIGFLGEAYTG 675
MTTSRGGCWSTLIEE+SGCQTCIVQATSSSTTATDDPPA+QWNSSVFS FFEMELDPCPESVSD YGTPPGGVVSYQEVLSADCR SD XXXXXX SVWLAFENSCYSKSSYLDAAVNWEDADARCGEVGARLVSLESEAENDFVTHNLLWIGFLGEAYTG
Sbjct: 1 MTTSRGGCWSTLIEEQSGCQTCIVQATSSSTTATDDPPASQWNSSVFSKFFEMELDPCPESVSDFYGTPPGGVVSYQEVLSADCRHSDDDNXXXXXXDSVWLAFENSCYSKSSYLDAAVNWEDADARCGEVGARLVSLESEAENDFVTHNLLWIGFLGEAYTG 163
BLAST of mRNA_E-siliculosus-1a_F_contig1020.193.1 vs. uniprot
Match: D8LHR0_ECTSI (C-type lectin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHR0_ECTSI) HSP 1 Score: 170 bits (431), Expect = 1.780e-41 Identity = 106/282 (37.59%), Postives = 145/282 (51.42%), Query Frame = 1 Query: 145 RGKGAFFSGCTSRSMTTSRGGCWST------LIEEESGCQTCIVQATSSSTTATDDPPAAQWNSSVFSTFFEMELDPCPESV--SDIYGTPPGGV--VSYQEVLSADCRDSDXXXXXXXXXXSVWLAFENS--CYSKSSYLDAAVNWEDADARCGEVGARLVSLESEAENDFVTHNLLWIGFLGEAYTGLQKTSDDGTWSWRDSLAGFTPGDFDASVSFQDWGEGLDASSSYESTGA---SCLEITPYYPKAWNPFSCEVNKQYVCERPAAPG---SGSSSP 936
RGKGAF SGC + S + GGCW+ IEE GCQTC +Q + ++ +VF F ELDPCP+ + + +Y GG+ V+ + S C + WL FE++ CY KS A N DA + C E GA +++++SEAENDF+ HN+L+ GF GE YTG+ K S W W + ++ + DW EG + + G SC+EI PY PK WNPFSC+V K YVCE PA G +G++SP
Sbjct: 6 RGKGAFLSGCVTLSDESYLGGCWTQDDDFGERIEETDGCQTCTIQEDA-------------FSEAVFPIMFPAELDPCPDDLDYTALYEGTYGGLSLVTAASLSSTGCPEG-------------WLYFEDTGNCYFKSPNTAKAENQADAVSICEEEGAWVIAIDSEAENDFLLHNMLFTGFFGETYTGMTKESPSDEWEWPAESSDTA---YNCVGDYSDWLEGAEIGCAAVFDGGEDGSCMEIFPYEPKGWNPFSCDVGKHYVCEMPATAGGEETGTASP 258
BLAST of mRNA_E-siliculosus-1a_F_contig1020.193.1 vs. uniprot
Match: A0A383WIY0_TETOB (C-type lectin domain-containing protein n=2 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383WIY0_TETOB) HSP 1 Score: 94.0 bits (232), Expect = 2.100e-16 Identity = 90/300 (30.00%), Postives = 129/300 (43.00%), Query Frame = 1 Query: 112 CATLVPIEDRRRGKGAFFSGCTSRSMTTSRGGCWSTLIEEESGCQTCIVQATSSSTTATDDPPAAQWNSSVFSTFFEMELDPCPESVSDIY------GTPPGGVVSYQEVLSADCRDSDXXXXXXXXXXSVWL--AFENSCYSKSS-YLDAAVNWEDADARCGEV--GARLVSLESEAENDFVTHNLLWIGFLGEAYTGLQK--TSD---DGTWSWRDSLAGFTP-----GDFDASVSFQDW---GEGLDASSSYESTGASCLEITPYYPKAWNPFSCEVNKQYVCER-PAAPGSGSSSP 936
C L+ E+ RG G F+ S S G W + + C+TCI TS + A+DD PA CP V Y VV L+ + + WL + CY KSS + +++A RC + GA ++++ E++FV NLL++G GE YTGL+K +SD D W W + + T G S+ ++ G G+ SY G C+EI P PK WNPF+C+V KQY+CER P PG ++P
Sbjct: 26 CPALMAEEEVIRGFGTFYD-----STCASAAGDWGGV----NCCRTCIWHNTSVAQFASDDLPA------------------CPPCVRQYYEAAFRLANASLNVVPLTAYLNPE---------KCPFGANGWLYNPANDRCYYKSSGRRGISSGFDNAVMRCNTLHAGASMININDAQEDEFVRLNLLYVGTFGETYTGLKKLGSSDPAFDNQWYWLQNASQLTAPLASVGSRLLPTSYNNFNYPGRGI----SYSEAGPLCMEILPQKPKFWNPFACDVIKQYLCERAPVQPGENYTTP 285
BLAST of mRNA_E-siliculosus-1a_F_contig1020.193.1 vs. uniprot
Match: A0A7J7Q9X4_9CHLO (C-type lectin domain-containing protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7Q9X4_9CHLO) HSP 1 Score: 76.3 bits (186), Expect = 7.660e-11 Identity = 60/161 (37.27%), Postives = 79/161 (49.07%), Query Frame = 1 Query: 481 SVWL--AFENSCYSKSSY---LDAAVNWEDADARCGEV--GARLVSLESEAENDFVTHNLLWIGFLGEAYT----------GLQKTSDDGTWSWRDSLAGFTPGDFDASVSFQDWGEGLDASSSYESTGASCLEITPYYPKAWNPFSCEVNKQYVCERPAA 912
S WL N CY KSSY + A + DA RC + GA ++++ E +FV NLL+ GF GE YT GLQ W+ +S+A D+ +F + G G D Y + C+EI P PK +NPFSC V KQY+CER A
Sbjct: 100 SGWLYNPANNRCYYKSSYDRGISAGIT--DAINRCFTLHAGASILNIADAQEEEFVRLNLLYAGFFGETYTSCICPSATARGLQLPQ--AAWARPESVAT----DYH---NFNEPGRGFD----YYESEVVCMEILPNKPKYYNPFSCAVLKQYICERSVA 245
BLAST of mRNA_E-siliculosus-1a_F_contig1020.193.1 vs. uniprot
Match: K1QVJ2_CRAGI (Low affinity immunoglobulin epsilon Fc receptor n=2 Tax=Crassostrea gigas TaxID=29159 RepID=K1QVJ2_CRAGI) HSP 1 Score: 68.2 bits (165), Expect = 6.040e-10 Identity = 46/166 (27.71%), Postives = 71/166 (42.77%), Query Frame = 1 Query: 409 SYQEVLSADCRDSDXXXXXXXXXXSVWLAFENSCYSKSSYLDAAVN-WEDADARCGEVGARLVSLESEAENDFVTHNLLWIGFLGEAYTGLQKTSDDGTWSWRDSLAGFTPGDFDASVSFQDWGEGLDASSSYESTGASCLEITPYYPKAWNPFSCEVNKQYVCER 903
S V S CRD WL NSCY+ ++DA + W +A C VGA+LV +E+E+EN+F+ +L IG + GL +G + W+ + +V + DW G + C E+ + WN C V ++CE+
Sbjct: 13 SVYAVNSQGCRDG-------------WLHHGNSCYA---FIDAEPDGWIEAMFYCSSVGAKLVEIETESENNFLKRHLQTIGATKNYWIGLSDAIKEGRFVWQTTQD---------NVDYTDWAPGEPNDDHHTE---DCAELFQPFSFHWNDAPCSVKSNFICEK 150
BLAST of mRNA_E-siliculosus-1a_F_contig1020.193.1 vs. uniprot
Match: A0A485P1I4_LYNPA (C-type lectin domain family 4 n=1 Tax=Lynx pardinus TaxID=191816 RepID=A0A485P1I4_LYNPA) HSP 1 Score: 62.4 bits (150), Expect = 5.400e-8 Identity = 42/143 (29.37%), Postives = 68/143 (47.55%), Query Frame = 1 Query: 487 WLAFENSCYSKSSYLDAAVNWEDADARCGEVGARLVSLESEAENDFVTHNLLWIGFLGEAYT---GLQKTSDDGTWSWRDSLAGFTPGDFDASVSFQDWGEGLDASSSYESTGASCLEITPYYPKAWNPFSCEVNKQYVCERP 906
W +F++SCY L+ W ++ C ++GA LV++ SEAE +F+ + FL ++ GL +G WSW D TP FD + F W EG ++Y+ + + AWN F C ++ +C+ P
Sbjct: 17 WRSFQDSCYLP---LNDNKTWAKSERNCTDMGAHLVTITSEAEQNFI------VQFLDRRFSYFLGLTDEDHEGQWSWVDK----TP--FDPHIVF--WHEGEP--NNYKQNENCVILVNVQDKWAWNDFPCNFERRRICKLP 140
BLAST of mRNA_E-siliculosus-1a_F_contig1020.193.1 vs. uniprot
Match: A0A6J8DY73_MYTCO (C-type lectin domain-containing protein n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8DY73_MYTCO) HSP 1 Score: 63.9 bits (154), Expect = 7.660e-8 Identity = 40/142 (28.17%), Postives = 61/142 (42.96%), Query Frame = 1 Query: 487 WLAFENSCYSKSSYLDAAVNWEDADARCGEVGARLVSLESEAENDFVTHNLLWIGFLGEAYTGLQKTSDDGTWSWRDSLAGFTPGDFD-ASVSFQDWGEGLDASSSYESTGASCLEITPYYPKAWNPFSCEVNKQYVCERPA 909
W++F N CY ++ V W+ A C G RLV +++ E+ ++T L E + G+ +G W W DFD +S+SF W G E+ G C + WN C + YVCE+P+
Sbjct: 107 WISFSNHCYL---FVYEKVTWKHAKVECQNKGGRLVKIDNNDEDSWLTSVL-----KDEVWMGMSDIQIEGYWIW----------DFDMSSLSFNQWHPGEPNGGGRENCGLYCKQRCKQSSFVWNDAVCSLVYGYVCEKPS 230
BLAST of mRNA_E-siliculosus-1a_F_contig1020.193.1 vs. uniprot
Match: UPI00046B7F83 (C-type lectin domain family 4 member E isoform X1 n=2 Tax=Eptesicus fuscus TaxID=29078 RepID=UPI00046B7F83) HSP 1 Score: 62.8 bits (151), Expect = 1.750e-7 Identity = 48/169 (28.40%), Postives = 76/169 (44.97%), Query Frame = 1 Query: 403 VVSYQEVLSADCRDSDXXXXXXXXXXSVWLAFENSCYSKSSYLDAAVNWEDADARCGEVGARLVSLESEAENDFVTHNLLWIGFLGEAYTGLQKTSDDGTWSWRDSLAGFTPGDFDASVSFQDWGEGLDASSSYESTGASCLEITPYYPKAWNPFSCEVNKQYVCERPA 909
V Y+E + +C ++ S W+ F++SCY S+ + W ++ C +GA LV + SE E +F+ H E Y GL DG W W D TP F S+SF W EG + ++ + + + + WN +C +N ++CE PA
Sbjct: 57 VQPYEEFVEFNCYNNVSGSVKNCCPLS-WIHFQSSCYFFSTN---TLTWSESVKNCSSMGAHLVVINSEEEQEFLFHAK---PKNREFYIGLTDQVIDGQWKWVDG----TP--FTESLSF--WAEG-EPNNLVTVEDCATIRDSKNPRQNWNDMACFLNMFWICEMPA 209
BLAST of mRNA_E-siliculosus-1a_F_contig1020.193.1 vs. uniprot
Match: A0A7J7PFC2_9CHLO (Uncharacterized protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7PFC2_9CHLO) HSP 1 Score: 65.1 bits (157), Expect = 2.430e-7 Identity = 58/176 (32.95%), Postives = 75/176 (42.61%), Query Frame = 1 Query: 481 SVWL--AFENSCYSKSSY---LDAAVNWEDADARCGEV--GARLVSLESEAENDFVTHNLLWIGFLGEAYT----------GLQKTSDDGTWSWRDSLAGFTPGDFDASVS---------------FQDWGEGLDASSSYESTGASCLEITPYYPKAWNPFSCEVNKQYVCERPAA 912
S WL + CY KSSY + A + DA RC + GA ++++ E +FV NLL+ GF GE YT LQ + + + P SVS F + G G D Y C+EI P PK +NPFSC V KQY+CER A
Sbjct: 108 SGWLYNPANDRCYYKSSYDRGISAGIT--DAINRCFTLHAGASILNIADAQEEEFVRLNLLYAGFFGETYTFNALPSCVARPLQYMLRMPLQAHQVLVEAGMPSSMSHSVSGAVLHSAKQATDYHNFNEPGRGFD----YYELEVVCMEILPNKPKYYNPFSCAVLKQYICERSVA 277
BLAST of mRNA_E-siliculosus-1a_F_contig1020.193.1 vs. uniprot
Match: A0A6P4WWQ3_PANPR (C-type lectin domain family 4 member D n=14 Tax=Felidae TaxID=9681 RepID=A0A6P4WWQ3_PANPR) HSP 1 Score: 60.8 bits (146), Expect = 6.500e-7 Identity = 43/140 (30.71%), Postives = 67/140 (47.86%), Query Frame = 1 Query: 487 WLAFENSCYSKSSYLDAAVNWEDADARCGEVGARLVSLESEAENDFVTHNLLWIGFLGEAYTGLQKTSDDGTWSWRDSLAGFTPGDFDASVSFQDWGEGLDASSSYESTGASCLEITPYYPKAWNPFSCEVNKQYVCERP 906
W +F++SCY L+ W ++ C ++GA LV++ SEAE +F+ LL F + GL +G WSW D TP FD + F W EG ++Y+ + + AWN F C ++ +C+ P
Sbjct: 84 WRSFQDSCYLP---LNDNKTWAKSERNCTDMGAHLVTITSEAEQNFIIQ-LLDRRF--SYFLGLTDEDHEGQWSWVDK----TP--FDPHIVF--WHEGEP--NNYKQNENCVILVNVQDKWAWNDFPCNFERRRICKLP 207 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1020.193.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1020.193.1 >prot_E-siliculosus-1a_F_contig1020.193.1 ID=prot_E-siliculosus-1a_F_contig1020.193.1|Name=mRNA_E-siliculosus-1a_F_contig1020.193.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=539bp MYQSRKVKRGVVASNTVVLAVVLGSVTGILAASTTEECATLVPIEDRRRGback to top mRNA from alignment at E-siliculosus-1a_F_contig1020:8057..13182+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1020.193.1 ID=mRNA_E-siliculosus-1a_F_contig1020.193.1|Name=mRNA_E-siliculosus-1a_F_contig1020.193.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=5126bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1020:8057..13182+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1020:8057..13182+ >mRNA_E-siliculosus-1a_F_contig1020.193.1 ID=mRNA_E-siliculosus-1a_F_contig1020.193.1|Name=mRNA_E-siliculosus-1a_F_contig1020.193.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=3234bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1020:8057..13182+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |