mRNA_E-siliculosus-1a_F_contig102.186.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig102.186.1 vs. uniprot
Match: D7FZ53_ECTSI (Ribosomal protein S17 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZ53_ECTSI) HSP 1 Score: 375 bits (962), Expect = 6.360e-127 Identity = 203/224 (90.62%), Postives = 203/224 (90.62%), Query Frame = 1 Query: 1 MFRTVLATIAPRATAASRSRAASG--RCAPFTAFATRRSSLS----SPSPPGGQSLPLDCAAAVTIRYVPRRCSWREMSSASAHVAAPGGGDLAMQGEGGGEGQXXXXXXXXRDARDPVTGEGIWVDEEDEPLDLEKPKKVQKFCGKVISDNMDKTIKVAVPYWYYVRRLGKRIIRYSKMMAHDEENSANVGDTVILVDCQQKSKRKKHTLLKIVRKLPRLDGI 654
M RTVLATIAPRATAASRSRAASG RCAPFTAFATRR S S SPSP GGQSLPLDCAAAVTIR VPRRCSWREMSSASAHVAAPGGGDLAMQGEGGGEGQ R ARDPVTGEGIWVDEEDEPLDLEKPKKVQKFCGKVISDNMDKTIKVAVPYWYYVRRLGKRIIRYSKMMAHDEENSANVGDTVILVDCQQKSKRKKHTLLKIVRKLPRLD I
Sbjct: 1 MLRTVLATIAPRATAASRSRAASGPGRCAPFTAFATRRPSPSPSRFSPSPQGGQSLPLDCAAAVTIRSVPRRCSWREMSSASAHVAAPGGGDLAMQGEGGGEGQQGEMGSSGRYARDPVTGEGIWVDEEDEPLDLEKPKKVQKFCGKVISDNMDKTIKVAVPYWYYVRRLGKRIIRYSKMMAHDEENSANVGDTVILVDCQQKSKRKKHTLLKIVRKLPRLDDI 224
BLAST of mRNA_E-siliculosus-1a_F_contig102.186.1 vs. uniprot
Match: A0A8J5XMV1_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XMV1_DIALT) HSP 1 Score: 72.0 bits (175), Expect = 3.450e-12 Identity = 36/77 (46.75%), Postives = 53/77 (68.83%), Query Frame = 1 Query: 409 KFCGKVISDNMDKTIKVAVPYWYYVRRLGKRIIRYSKMMAHDEENSANVGDTVILVDCQQKSKRKKHTLLKIVRKLP 639
K G+VIS M +++ V VPYW+ V+RL RI+R++K+MAHDE S GDTV L + SKRK H +++I+++ P
Sbjct: 5 KLIGQVISAKMQQSVVVKVPYWHVVQRLQMRIVRHTKLMAHDELESRE-GDTVQLKQSRPYSKRKHHKVIEILKRAP 80
BLAST of mRNA_E-siliculosus-1a_F_contig102.186.1 vs. uniprot
Match: W4QJJ8_9BACI (30S ribosomal protein S17 n=6 Tax=Bacillaceae TaxID=186817 RepID=W4QJJ8_9BACI) HSP 1 Score: 64.3 bits (155), Expect = 2.030e-9 Identity = 34/72 (47.22%), Postives = 46/72 (63.89%), Query Frame = 1 Query: 412 FCGKVISDNMDKTIKVAVPYWYYVRRLGKRIIRYSKMMAHDEENSANVGDTVILVDCQQKSKRKKHTLLKIV 627
+ G+V+SD MDKTI V V + R GKR+ K AHDEENSA VGD V +++ + SK K+ L++IV
Sbjct: 9 YTGRVVSDKMDKTISVLVETYKKDRLYGKRVKYSKKFKAHDEENSAKVGDIVKIMETRPLSKDKRFRLVEIV 80
BLAST of mRNA_E-siliculosus-1a_F_contig102.186.1 vs. uniprot
Match: A0A1D2QTM8_9GAMM (30S ribosomal protein S17 n=1 Tax=Candidatus Endobugula sertula TaxID=62101 RepID=A0A1D2QTM8_9GAMM) HSP 1 Score: 64.3 bits (155), Expect = 2.370e-9 Identity = 35/79 (44.30%), Postives = 47/79 (59.49%), Query Frame = 1 Query: 388 EKPKKVQKFCGKVISDNMDKTIKVAVPYWYYVRRLGKRIIRYSKMMAHDEENSANVGDTVILVDCQQKSKRKKHTLLKI 624
E+ KK + GKV+SD MDKTI V + GK + + SK+ AHDEENS N+GD V + + + SK K L+KI
Sbjct: 7 EQNKKARTLMGKVVSDKMDKTITVLIERRVKHPIYGKYMSKSSKLKAHDEENSCNIGDVVTIAESRPLSKSKTWALVKI 85
BLAST of mRNA_E-siliculosus-1a_F_contig102.186.1 vs. uniprot
Match: A0A7S2GQL6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2GQL6_9STRA) HSP 1 Score: 67.0 bits (162), Expect = 3.880e-9 Identity = 34/73 (46.58%), Postives = 45/73 (61.64%), Query Frame = 1 Query: 412 FCGKVISDNMDKTIKVAVPYWYYVRRLGKRIIRYSKMMAHDEENSANVGDTVILVDCQQKSKRKKHTLLKIVR 630
G V+SD M KT+ VAV + V + GKR+ K MAHDEE +GD V++V CQQ SKRK + +I+R
Sbjct: 139 LVGTVVSDKMQKTVNVAVDRYRIVPKYGKRLKYTRKFMAHDEEEVCGMGDVVMIVPCQQISKRKHFMVREIIR 211
BLAST of mRNA_E-siliculosus-1a_F_contig102.186.1 vs. uniprot
Match: A0A0S7Z531_9GAMM (30S ribosomal protein S17 n=1 Tax=Gammaproteobacteria bacterium SG8_30 TaxID=1703404 RepID=A0A0S7Z531_9GAMM) HSP 1 Score: 63.5 bits (153), Expect = 4.790e-9 Identity = 33/72 (45.83%), Postives = 44/72 (61.11%), Query Frame = 1 Query: 412 FCGKVISDNMDKTIKVAVPYWYYVRRLGKRIIRYSKMMAHDEENSANVGDTVILVDCQQKSKRKKHTLLKIV 627
G V+S+ MDKTI VAV GK + R +K++AHDE N N GDTV + C+ SKRK TL+++V
Sbjct: 18 LSGTVVSNKMDKTITVAVERVMKHPTYGKYVRRTTKLLAHDENNECNEGDTVDIAQCRPLSKRKAWTLVRVV 89
BLAST of mRNA_E-siliculosus-1a_F_contig102.186.1 vs. uniprot
Match: UPI00195E68FA (30S ribosomal protein S17 n=3 Tax=Gracilibacillus TaxID=74385 RepID=UPI00195E68FA) HSP 1 Score: 63.2 bits (152), Expect = 5.320e-9 Identity = 30/72 (41.67%), Postives = 46/72 (63.89%), Query Frame = 1 Query: 412 FCGKVISDNMDKTIKVAVPYWYYVRRLGKRIIRYSKMMAHDEENSANVGDTVILVDCQQKSKRKKHTLLKIV 627
+ G+V+SD MDKTI V V + + GKR+ K AHDE N+A +GD V +++ + +SK K+ LL++V
Sbjct: 10 YTGRVVSDKMDKTITVVVETYKFHNLYGKRVKYSKKFKAHDENNTAKIGDIVRIMETRPQSKTKRFRLLEVV 81
BLAST of mRNA_E-siliculosus-1a_F_contig102.186.1 vs. uniprot
Match: A0A4D6WZL6_9FLOR (30S ribosomal protein S17, chloroplastic n=1 Tax=Plumaria plumosa TaxID=189642 RepID=A0A4D6WZL6_9FLOR) HSP 1 Score: 62.8 bits (151), Expect = 6.050e-9 Identity = 33/79 (41.77%), Postives = 50/79 (63.29%), Query Frame = 1 Query: 400 KVQKFCGKVISDNMDKTIKVAVPYWYYVRRLGKRIIRYSKMMAHDEENSANVGDTVILVDCQQKSKRKKHTLLKIVRKL 636
K +K G V+S+NM+KTI VAV ++ GK I+ +K AHDE N+ N+GD V + + + SK K L+K++RK+
Sbjct: 2 KQKKTFGMVVSNNMNKTIVVAVKKQVSHKKYGKIFIKTNKYYAHDENNTCNIGDIVQIQETRPLSKNKHWMLIKLIRKI 80
BLAST of mRNA_E-siliculosus-1a_F_contig102.186.1 vs. uniprot
Match: A0A651GBH4_9BACT (30S ribosomal protein S17 n=3 Tax=Balneolaceae TaxID=1813606 RepID=A0A651GBH4_9BACT) HSP 1 Score: 62.8 bits (151), Expect = 7.270e-9 Identity = 34/70 (48.57%), Postives = 44/70 (62.86%), Query Frame = 1 Query: 418 GKVISDNMDKTIKVAVPYWYYVRRLGKRIIRYSKMMAHDEENSANVGDTVILVDCQQKSKRKKHTLLKIV 627
GKV+SD MDK+I VAV GK I + +K MAHDE N AN GDTV+++ + SKRK L+ I+
Sbjct: 14 GKVVSDRMDKSITVAVDRQIKHPIYGKFITKTTKYMAHDENNDANTGDTVLIMSTRPLSKRKSWRLVDII 83
BLAST of mRNA_E-siliculosus-1a_F_contig102.186.1 vs. uniprot
Match: A0A1G0F8I5_9GAMM (30S ribosomal protein S17 n=1 Tax=Gammaproteobacteria bacterium RIFCSPHIGHO2_02_FULL_42_13 TaxID=1798271 RepID=A0A1G0F8I5_9GAMM) HSP 1 Score: 62.4 bits (150), Expect = 9.680e-9 Identity = 33/84 (39.29%), Postives = 52/84 (61.90%), Query Frame = 1 Query: 385 LEKPKKVQKFCGKVISDNMDKTIKVAVPYWYYVRRLGKRIIRYSKMMAHDEENSANVGDTVILVDCQQKSKRKKHTLLKIVRKL 636
+ + K+V+ GKVIS+ MDKTI VA+ R K + R +K+ AHDE+N+ +GD V +V+ + KSK K L ++V ++
Sbjct: 1 MTEQKRVKTLTGKVISNKMDKTIVVAIERQVTHRLYKKSVKRTTKIHAHDEDNTCEIGDIVKIVETRPKSKTKAWALAEVVERI 84 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig102.186.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig102.186.1 >prot_E-siliculosus-1a_F_contig102.186.1 ID=prot_E-siliculosus-1a_F_contig102.186.1|Name=mRNA_E-siliculosus-1a_F_contig102.186.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=219bp MFRTVLATIAPRATAASRSRAASGRCAPFTAFATRRSSLSSPSPPGGQSLback to top mRNA from alignment at E-siliculosus-1a_F_contig102:17164..20424- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig102.186.1 ID=mRNA_E-siliculosus-1a_F_contig102.186.1|Name=mRNA_E-siliculosus-1a_F_contig102.186.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3261bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig102:17164..20424- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig102:17164..20424- >mRNA_E-siliculosus-1a_F_contig102.186.1 ID=mRNA_E-siliculosus-1a_F_contig102.186.1|Name=mRNA_E-siliculosus-1a_F_contig102.186.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1314bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig102:17164..20424- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |