mRNA_E-siliculosus-1a_F_contig10178.170.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10178.170.1 vs. uniprot
Match: D7FRH8_ECTSI (Signal peptide peptidase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRH8_ECTSI) HSP 1 Score: 216 bits (550), Expect = 8.440e-64 Identity = 107/110 (97.27%), Postives = 108/110 (98.18%), Query Frame = 1 Query: 1 RFSYRSWGGGYLACVREVRDAVTRFREVGSDASATAGEGAEADGRQRKRFTIAVADTFGEGGPAVGEYFLASAFEKVLVQKTGYVGLNGSGGQKLFFRGFLDKYGIKPEV 330
RFSYRSWGGGYLACV+EVRDAVTRFRE GSDASATAGEGAEADGRQRKRFTIAVADTFGEGGPAVGEYFLASAFEKVLVQKTGYVGL GSGGQKLFFRGFLDKYGIKPEV
Sbjct: 25 RFSYRSWGGGYLACVQEVRDAVTRFREAGSDASATAGEGAEADGRQRKRFTIAVADTFGEGGPAVGEYFLASAFEKVLVQKTGYVGLTGSGGQKLFFRGFLDKYGIKPEV 134
BLAST of mRNA_E-siliculosus-1a_F_contig10178.170.1 vs. uniprot
Match: A0A372JBQ3_9ACTN (Signal peptide peptidase SppA n=3 Tax=Actinomadura TaxID=1988 RepID=A0A372JBQ3_9ACTN) HSP 1 Score: 74.7 bits (182), Expect = 2.400e-12 Identity = 42/105 (40.00%), Postives = 58/105 (55.24%), Query Frame = 1 Query: 22 GGGYLACVREVRDAVTRFREVGSDASATAGEGAEADGRQRKRFTIAVADTFGEGGPAVGEYFLASAFEKVLVQKTGYVGLNGSGGQKLFFRGFLDKYGIKPEVVR 336
GG LA V+EVR+AV R G ++T+A A+TFGEGG Y+LASAF++V +Q TG VGL G ++ FF G L+K G++P +
Sbjct: 77 GGAGLALVQEVREAVGALRAAG-------------------KYTVAWAETFGEGGRGTVPYYLASAFDRVFLQPTGEVGLTGVALEEPFFAGALEKAGVQPRFAK 162
BLAST of mRNA_E-siliculosus-1a_F_contig10178.170.1 vs. uniprot
Match: A0A7S0YTA2_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0YTA2_9CRYP) HSP 1 Score: 70.1 bits (170), Expect = 8.570e-11 Identity = 37/100 (37.00%), Postives = 57/100 (57.00%), Query Frame = 1 Query: 34 LACVREVRDAVTRFREVGSDASATAGEGAEADGRQRKRFTIAVADTFGEGGPAVGEYFLASAFEKVLVQKTGYVGLNGSGGQKLFFRGFLDKYGIKPEVV 333
+A ++E+RDAV FR SA GE + +R + ADTFGE G G+Y+LA+AF+K+ +Q +G VG+ G + F + L K G+ P+ +
Sbjct: 93 MATMQEIRDAVMAFR------SAQGGE-------EARRPAVYAADTFGESGQGTGQYYLATAFDKIFIQPSGLVGIIGLHSEAFFLKRMLAKLGVHPQFI 179
BLAST of mRNA_E-siliculosus-1a_F_contig10178.170.1 vs. uniprot
Match: A0A5Q4DG26_9BACT (Signal peptide peptidase SppA n=1 Tax=Gemmatimonadales bacterium TaxID=2448054 RepID=A0A5Q4DG26_9BACT) HSP 1 Score: 65.5 bits (158), Expect = 3.800e-9 Identity = 41/108 (37.96%), Postives = 57/108 (52.78%), Query Frame = 1 Query: 22 GGGYLACVREVRDAVTRFREVGSDASATAGEGAEADGRQRKRFTIAVADTFGEGGPAVGEYFLASAFEKVLVQKTGYVGLNGSGGQKLFFRGFLDKYGIKPEVVRSRG 345
G G A +E+ AVTRFR G T+ A+TFGE PA G YFLA+AF+++++Q +G VGL G + FFRG +++ I P+ SRG
Sbjct: 97 GVGGWATTQEIHGAVTRFRASGKP-------------------TLLFAETFGELAPAQGAYFLATAFDEIVLQPSGEVGLAGLALEAPFFRGVFERWDIVPQF-ESRG 184
BLAST of mRNA_E-siliculosus-1a_F_contig10178.170.1 vs. uniprot
Match: A0A545TXP2_9PROT (Protease 4 n=1 Tax=Denitrobaculum tricleocarpae TaxID=2591009 RepID=A0A545TXP2_9PROT) HSP 1 Score: 64.3 bits (155), Expect = 9.400e-9 Identity = 34/97 (35.05%), Postives = 55/97 (56.70%), Query Frame = 1 Query: 34 LACVREVRDAVTRFREVGSDASATAGEGAEADGRQRKRFTIAVADTFGEGGPAVGEYFLASAFEKVLVQKTGYVGLNGSGGQKLFFRGFLDKYGIKP 324
++ V+E+R+A+ FR G +F+IA A++FGEGG Y+LASAFE++ +Q +G + + G + + RG LDK+G+KP
Sbjct: 111 ISQVQELREAIAGFRATG-------------------KFSIAFAESFGEGGDGTLHYYLASAFEEIWLQPSGDLDITGIQLESPYIRGLLDKHGVKP 188
BLAST of mRNA_E-siliculosus-1a_F_contig10178.170.1 vs. uniprot
Match: A0A2E2QB37_9PROT (Protease 4 n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A2E2QB37_9PROT) HSP 1 Score: 63.9 bits (154), Expect = 1.290e-8 Identity = 36/105 (34.29%), Postives = 56/105 (53.33%), Query Frame = 1 Query: 25 GGY-LACVREVRDAVTRFREVGSDASATAGEGAEADGRQRKRFTIAVADTFGEGGPAVGEYFLASAFEKVLVQKTGYVGLNGSGGQKLFFRGFLDKYGIKPEVVR 336
G Y LA + +++ A+ +FR G ++T A AD+FGE G + EYFLA++F++V +Q G + LNG L+F+G DKY + PE +
Sbjct: 126 GNYSLAQLYDLKAAIKKFRGAG-------------------KYTYAYADSFGEAGYGMDEYFLAASFDEVWMQPLGSLSLNGFALSNLYFKGLFDKYKVMPEFFQ 211
BLAST of mRNA_E-siliculosus-1a_F_contig10178.170.1 vs. uniprot
Match: A0A7K0BPV9_9ACTN (Protease 4 n=1 Tax=Actinomadura macrotermitis TaxID=2585200 RepID=A0A7K0BPV9_9ACTN) HSP 1 Score: 63.2 bits (152), Expect = 2.320e-8 Identity = 36/105 (34.29%), Postives = 55/105 (52.38%), Query Frame = 1 Query: 22 GGGYLACVREVRDAVTRFREVGSDASATAGEGAEADGRQRKRFTIAVADTFGEGGPAVGEYFLASAFEKVLVQKTGYVGLNGSGGQKLFFRGFLDKYGIKPEVVR 336
GG LA +E+R AV R+ G ++T+A A+TFGEGG Y+LA+ F+K+ +Q +G VGL G ++ F G L+K G++P +
Sbjct: 77 GGVGLAMTQELRAAVQAVRDAG-------------------KYTVAWAETFGEGGRGSVPYYLATGFDKIWLQPSGEVGLTGVALEEPFLAGALEKAGVQPRFAK 162
BLAST of mRNA_E-siliculosus-1a_F_contig10178.170.1 vs. uniprot
Match: UPI000408AB31 (signal peptide peptidase SppA n=1 Tax=Geminicoccus roseus TaxID=404900 RepID=UPI000408AB31) HSP 1 Score: 62.0 bits (149), Expect = 5.790e-8 Identity = 36/103 (34.95%), Postives = 53/103 (51.46%), Query Frame = 1 Query: 34 LACVREVRDAVTRFREVGSDASATAGEGAEADGRQRKRFTIAVADTFGEGGPAVGEYFLASAFEKVLVQKTGYVGLNGSGGQKLFFRGFLDKYGIKPEVVRSR 342
A +E+R A+ R G + T+A AD+FGE P Y+LASAFE++++Q G VGL G ++ F RG +DK G++ EV + R
Sbjct: 102 FATTQELRQAILAVRAAG-------------------KTTLAFADSFGELSPGNEGYYLASAFEQIVLQPVGSVGLTGLAMEEPFARGLIDKLGVELEVTKRR 185
BLAST of mRNA_E-siliculosus-1a_F_contig10178.170.1 vs. uniprot
Match: A0A7V9AHG6_9BACT (Signal peptide peptidase SppA n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7V9AHG6_9BACT) HSP 1 Score: 62.0 bits (149), Expect = 5.800e-8 Identity = 36/103 (34.95%), Postives = 53/103 (51.46%), Query Frame = 1 Query: 22 GGGYLACVREVRDAVTRFREVGSDASATAGEGAEADGRQRKRFTIAVADTFGEGGPAVGEYFLASAFEKVLVQKTGYVGLNGSGGQKLFFRGFLDKYGIKPEV 330
GG L + E+RDAVT FR G A I ++TFG+GGP G Y+LA+AF+ + +Q +G + + G + F G LD+ GI+P +
Sbjct: 85 GGLGLGQIEEIRDAVTAFRASGKPA-------------------ILFSETFGDGGPGHGGYYLATAFDSIFLQPSGDLSVAGLRIEVPFVAGTLDRVGIEPRI 168
BLAST of mRNA_E-siliculosus-1a_F_contig10178.170.1 vs. uniprot
Match: A0A368T4M0_9ACTN (Signal peptide peptidase SppA n=1 Tax=Marinitenerispora sediminis TaxID=1931232 RepID=A0A368T4M0_9ACTN) HSP 1 Score: 62.0 bits (149), Expect = 5.800e-8 Identity = 37/96 (38.54%), Postives = 52/96 (54.17%), Query Frame = 1 Query: 43 VREVRDAVTRFREVGSDASATAGEGAEADGRQRKRFTIAVADTFGEGGPAVGEYFLASAFEKVLVQKTGYVGLNGSGGQKLFFRGFLDKYGIKPEV 330
V+E+R AVT FR G T+A +++FGE GP Y+LA+AFE++++Q +G VGL G FFR +DK GI+ EV
Sbjct: 85 VQELRAAVTAFRRSGKP-------------------TVAWSESFGEFGPGTVPYYLAAAFEEIVLQPSGSVGLTGLSVTNRFFRDAVDKLGIEYEV 161 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10178.170.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10178.170.1 >prot_E-siliculosus-1a_F_contig10178.170.1 ID=prot_E-siliculosus-1a_F_contig10178.170.1|Name=mRNA_E-siliculosus-1a_F_contig10178.170.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=129bp RFSYRSWGGGYLACVREVRDAVTRFREVGSDASATAGEGAEADGRQRKRFback to top mRNA from alignment at E-siliculosus-1a_F_contig10178:642..2453- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig10178.170.1 ID=mRNA_E-siliculosus-1a_F_contig10178.170.1|Name=mRNA_E-siliculosus-1a_F_contig10178.170.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1812bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10178:642..2453- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10178:642..2453- >mRNA_E-siliculosus-1a_F_contig10178.170.1 ID=mRNA_E-siliculosus-1a_F_contig10178.170.1|Name=mRNA_E-siliculosus-1a_F_contig10178.170.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=774bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10178:642..2453- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |