mRNA_E-siliculosus-1a_F_contig1017.167.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1017.167.1 vs. uniprot
Match: D8LND8_ECTSI (Putative: flagellar associated protein, qilin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LND8_ECTSI) HSP 1 Score: 201 bits (511), Expect = 5.670e-61 Identity = 106/108 (98.15%), Postives = 106/108 (98.15%), Query Frame = 1 Query: 1 MRTQCEDLEADEAELNAKIKKKRNELGRGEKRLKSLQAHRPAFADELDKLEGELRRYYEVYVDRFRNLDFLEHNLDRFHESEMEELEEYERKRNRNAERVRREQLKQV 324 MR QCEDLEADEAELNAKIKKKRNEL RGEKRLKSLQAHRPAFADELDKLEGELRRYYEVYVDRFRNLDFLEHNLDRFHESEMEELEEYERKRNRNAERVRREQLKQV Sbjct: 163 MRRQCEDLEADEAELNAKIKKKRNELDRGEKRLKSLQAHRPAFADELDKLEGELRRYYEVYVDRFRNLDFLEHNLDRFHESEMEELEEYERKRNRNAERVRREQLKQV 270
BLAST of mRNA_E-siliculosus-1a_F_contig1017.167.1 vs. uniprot
Match: A0A6H5KKU0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKU0_9PHAE) HSP 1 Score: 154 bits (390), Expect = 2.510e-43 Identity = 83/94 (88.30%), Postives = 83/94 (88.30%), Query Frame = 1 Query: 1 MRTQCEDLEADEAELNAKIKKKRNELGRGEKRLKSLQ---------AHRPAFADELDKLEGELRRYYEVYVDRFRNLDFLEHNLDRFHESEMEE 255 MR QCEDLEADEAELNAKIKKKRNEL RGEKRLKSLQ AHRPAFADELDKLEGELRRYYEVYVDRFRNLDFLEHNLDRFHESEMEE Sbjct: 1 MRRQCEDLEADEAELNAKIKKKRNELERGEKRLKSLQHNTLPWSKKAHRPAFADELDKLEGELRRYYEVYVDRFRNLDFLEHNLDRFHESEMEE 94
BLAST of mRNA_E-siliculosus-1a_F_contig1017.167.1 vs. uniprot
Match: A0A7S3V1T9_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3V1T9_9STRA) HSP 1 Score: 105 bits (262), Expect = 7.660e-23 Identity = 52/90 (57.78%), Postives = 72/90 (80.00%), Query Frame = 1 Query: 10 QCEDLEADEAELNAKIKKKRNELGRGEKRLKSLQAHRPAFADELDKLEGELRRYYEVYVDRFRNLDFLEHNLDRFHESEMEELEEYERKR 279 QCEDLE+D+ L AKIKKK++EL R +KRLKSLQ+ RPAF D+ +KLE EL ++YE+Y+++FRNLD+L+H L+++ E E EE ER+R Sbjct: 374 QCEDLESDKKTLEAKIKKKQSELERNDKRLKSLQSVRPAFMDDYEKLEAELEQHYEIYLEKFRNLDYLQHELEKYSRREKERTEESERER 463
BLAST of mRNA_E-siliculosus-1a_F_contig1017.167.1 vs. uniprot
Match: A0A7S2RD03_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RD03_9STRA) HSP 1 Score: 103 bits (257), Expect = 1.560e-22 Identity = 54/105 (51.43%), Postives = 81/105 (77.14%), Query Frame = 1 Query: 1 MRTQCEDLEADEAELNAKIKKKRNELGRGEKRLKSLQAHRPAFADELDKLEGELRRYYEVYVDRFRNLDFLEHNLDRFHESEMEELEEYERKRNRNAERVRREQL 315 M+ +C+ LE +E +L+ KIK+K+ EL R EK L+ LQ RPAF DE +KLE +L+R+YE Y++RFRNLD+LEH LD+++++E E+L+E ER+R R ++R E+L Sbjct: 204 MQKECKALEVNEQDLDEKIKRKQGELERQEKTLRRLQTVRPAFMDEYEKLEMDLQRHYESYLERFRNLDYLEHELDQYNKAEKEKLDENERERMRIQAKIREEEL 308
BLAST of mRNA_E-siliculosus-1a_F_contig1017.167.1 vs. uniprot
Match: A0A836CCE3_9STRA (Clusterin-associated protein-1-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCE3_9STRA) HSP 1 Score: 102 bits (254), Expect = 8.880e-22 Identity = 61/128 (47.66%), Postives = 79/128 (61.72%), Query Frame = 1 Query: 1 MRTQCEDLEADEAELNAKIKKKR-----------------------------NELGRGEKRLKSLQAHRPAFADELDKLEGELRRYYEVYVDRFRNLDFLEHNLDRFHESEMEELEEYERKRNRNAER 297 ++ Q DLEADE L+A+IKK + +L R EKRL+SL+ HRPAFADEL+KLE EL+RYYEVY+ RFRNLD+LEH + E+E E+EE+ R+RNRNAE+ Sbjct: 232 LQRQTADLEADERALDARIKKAQYVSADPEAARRAAHARMEVTDDNVAVHEAGDLERNEKRLRSLETHRPAFADELEKLEAELQRYYEVYMVRFRNLDYLEHXXXXYAEAERAEMEEHNRRRNRNAEK 359
BLAST of mRNA_E-siliculosus-1a_F_contig1017.167.1 vs. uniprot
Match: A0A7S4A080_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A080_9STRA) HSP 1 Score: 97.8 bits (242), Expect = 1.840e-20 Identity = 52/102 (50.98%), Postives = 73/102 (71.57%), Query Frame = 1 Query: 13 CEDLEADEAELNAKIKKKRNELGRGEKRLKSLQAHRPAFADELDKLEGELRRYYEVYVDRFRNLDFLEHNLDRFHESEMEELEEYERKRNRNAERVRREQLK 318 C++ ADE L+AKIK NEL R EKRL SLQ RPAF DE +KLEGEL++ Y VY++RFRNLD+L+ L +H ++ E++E++R R +R+R E+L+ Sbjct: 208 CDEYAADERALDAKIKXXXNELERHEKRLSSLQNVRPAFMDEYEKLEGELQKQYSVYLERFRNLDYLQAELQTYHAADKAEVDEHDRNLKRMQKRLREEELR 309
BLAST of mRNA_E-siliculosus-1a_F_contig1017.167.1 vs. uniprot
Match: A0A7M7NW33_STRPU (Uncharacterized protein n=2 Tax=Echinacea TaxID=7674 RepID=A0A7M7NW33_STRPU) HSP 1 Score: 96.7 bits (239), Expect = 5.360e-20 Identity = 56/123 (45.53%), Postives = 83/123 (67.48%), Query Frame = 1 Query: 16 EDLEADEAELNAKIKKKRNELGRGEKRLKSLQAHRPAFADELDKLEGELRRYYEVYVDRFRNLDFLEHNLDRFHESEMEELEEYERKRNRNAERVRRE--QLKQVKKGCCDLDRCGIVVVAGA 378 E++ +DEA L AKI+KKR+E+ R EKRL +LQ+ RPAF DE +KLEG+L++ YEV+++R+RNL +LEH LD + +E + EE E + R+R+E ++K + D D G+ VV A Sbjct: 204 ENVASDEANLEAKIEKKRSEMERNEKRLSTLQSVRPAFMDEYEKLEGDLQKQYEVFIERYRNLTYLEHQLDEYSRAEQDRFEETENSLKQMQSRLRQEDDRIKMSGEVLGDEDMTGLDVVEDA 326
BLAST of mRNA_E-siliculosus-1a_F_contig1017.167.1 vs. uniprot
Match: A0A7S2DLT4_9DINO (Hypothetical protein (Fragment) n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2DLT4_9DINO) HSP 1 Score: 91.7 bits (226), Expect = 9.770e-20 Identity = 51/104 (49.04%), Postives = 71/104 (68.27%), Query Frame = 1 Query: 1 MRTQCEDLEADEAELNAKIKKKRNELGRGEKRLKSLQAHRPAFADELDKLEGELRRYYEVYVDRFRNLDFLEHNLDRFHESEMEELEEYERKRNRNAERVRREQ 312 ++ ++L+ DE L KI+KK+ EL R +KRL SL + RPAF DE ++LE EL RYYE YV RFRNLD+L+H LD+ + E E +EE +R R +R+R E+ Sbjct: 32 LKQMSDELQRDEKALEQKIRKKKQELDRCKKRLGSLASVRPAFMDEYEQLEQELERYYEQYVGRFRNLDYLDHELDQLNREEKERMEENDRALKRIQKRLRDEE 135
BLAST of mRNA_E-siliculosus-1a_F_contig1017.167.1 vs. uniprot
Match: A0A6A5AI13_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AI13_9STRA) HSP 1 Score: 94.7 bits (234), Expect = 1.270e-19 Identity = 49/88 (55.68%), Postives = 65/88 (73.86%), Query Frame = 1 Query: 1 MRTQCEDLEADEAELNAKIKKKRNELGRGEKRLKSLQAHRPAFADELDKLEGELRRYYEVYVDRFRNLDFLEHNLDRFHESEMEELEE 264 M QC +L+A+E L AKIKK + +L R EKRLKSLQ RPAF DE +KLE EL R Y +Y +R+RNLD+L+H LD ++ EM++L+E Sbjct: 195 MERQCSELDAEEKALGAKIKKAQGDLERSEKRLKSLQNVRPAFMDEYEKLEKELERQYIIYCERYRNLDYLQHELDLHNDREMKKLQE 282
BLAST of mRNA_E-siliculosus-1a_F_contig1017.167.1 vs. uniprot
Match: A0A397DYX1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397DYX1_9STRA) HSP 1 Score: 94.7 bits (234), Expect = 2.970e-19 Identity = 49/88 (55.68%), Postives = 65/88 (73.86%), Query Frame = 1 Query: 1 MRTQCEDLEADEAELNAKIKKKRNELGRGEKRLKSLQAHRPAFADELDKLEGELRRYYEVYVDRFRNLDFLEHNLDRFHESEMEELEE 264 M QC +L+A+E L AKIKK + +L R EKRLKSLQ RPAF DE +KLE EL R Y +Y +R+RNLD+L+H LD ++ EM++L+E Sbjct: 195 MERQCSELDAEEKALGAKIKKAQGDLERSEKRLKSLQNVRPAFMDEYEKLEKELERQYIIYCERYRNLDYLQHELDLHNDREMKKLQE 282 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1017.167.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1017.167.1 >prot_E-siliculosus-1a_F_contig1017.167.1 ID=prot_E-siliculosus-1a_F_contig1017.167.1|Name=mRNA_E-siliculosus-1a_F_contig1017.167.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=130bp MRTQCEDLEADEAELNAKIKKKRNELGRGEKRLKSLQAHRPAFADELDKLback to top mRNA from alignment at E-siliculosus-1a_F_contig1017:10087..11374- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1017.167.1 ID=mRNA_E-siliculosus-1a_F_contig1017.167.1|Name=mRNA_E-siliculosus-1a_F_contig1017.167.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1288bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1017:10087..11374- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1017:10087..11374- >mRNA_E-siliculosus-1a_F_contig1017.167.1 ID=mRNA_E-siliculosus-1a_F_contig1017.167.1|Name=mRNA_E-siliculosus-1a_F_contig1017.167.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=780bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1017:10087..11374- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |