mRNA_E-siliculosus-1a_F_contig1016.165.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1016.165.1 vs. uniprot
Match: A0A6H5JHB6_9PHAE (RF_PROK_I domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JHB6_9PHAE) HSP 1 Score: 562 bits (1448), Expect = 5.210e-199 Identity = 287/307 (93.49%), Postives = 294/307 (95.77%), Query Frame = 3 Query: 6 MWFTTMSPAGLRTLLARAGDVGLARRRSFQVPASLRTRCACLVTPQRRQQSHLCGAAATQPKGRGRAIPGRTRPPGAPVEGGIGGSSRRWVSTFEEDCEVVEECHLLLSSRLDIPALEARLAELDALVSDPKLYDDSTKAGKIVKERAKVESKLENVKSLNSELQSWREMYEMASLEEEGDLLTECIEKVGALRKQAERARAETLLSLGGELSSSNCYLELQAGAGGTESHDWTSMLYKMYTRWAETKAFTLRPLNSSPGDEAGLRSVMVFVEGESAYGWLRSEAGVHRLVRNSPYDPNGRRHTSFS 926 MWFTTMS AG+RTLLARAGD GLARRRSFQVPA RTRC CLVTPQRRQQSHL AAATQP GRGRAIPGRTRPPGAP EG IGG SRR +STFEEDC+V+EECHLLLSSRLDIPALEARLAELDALVSDPKLYDDSTKAGKIVKERAKVESKLENVKSLNSE++SWREMYEMASLEEEGDLLTECIEKVGALRKQAERARA+TLLSLGGELS SNCYLELQAGAGGTESHDWTSMLYKMYTRWAETKAFTLRPLNSSPGDEAGLRSVMVFVEGESAYGWLRSEAGVHRLVRNSPYDPNGRRHTSFS Sbjct: 1 MWFTTMSSAGVRTLLARAGDTGLARRRSFQVPAIWRTRCTCLVTPQRRQQSHLRAAAATQPNGRGRAIPGRTRPPGAPFEGVIGGCSRRLISTFEEDCKVIEECHLLLSSRLDIPALEARLAELDALVSDPKLYDDSTKAGKIVKERAKVESKLENVKSLNSEVKSWREMYEMASLEEEGDLLTECIEKVGALRKQAERARADTLLSLGGELSFSNCYLELQAGAGGTESHDWTSMLYKMYTRWAETKAFTLRPLNSSPGDEAGLRSVMVFVEGESAYGWLRSEAGVHRLVRNSPYDPNGRRHTSFS 307
BLAST of mRNA_E-siliculosus-1a_F_contig1016.165.1 vs. uniprot
Match: A0A3D9HVZ3_9PROT (Peptide chain release factor 2 n=1 Tax=Aestuariispira insulae TaxID=1461337 RepID=A0A3D9HVZ3_9PROT) HSP 1 Score: 197 bits (500), Expect = 6.700e-57 Identity = 100/201 (49.75%), Postives = 143/201 (71.14%), Query Frame = 3 Query: 324 LLSSRLDIPALEARLAELDALVSDPKLYDDSTKAGKIVKERAKVESKLENVKSLNSELQSWREMYEMASLEEEGDLLTECIEKVGALRKQAERARAETLLSLGGELSSSNCYLELQAGAGGTESHDWTSMLYKMYTRWAETKAFTLRPLNSSPGDEAGLRSVMVFVEGESAYGWLRSEAGVHRLVRNSPYDPNGRRHTSFS 926 LL+ +D+ A E RLAEL+A V DP L++DSTKA KI++ER+ +ES L + ++ + E+ E+A +E++GD++ E + AL+++A + + E+LLS GE S+NC+LE+ AGAGGTES DW SML +MY R+ + + F L SPG+EAG++S + V G +AYGWL++EAGVHRLVR SP+D N RRHTSFS Sbjct: 18 LLAKHIDLDASEKRLAELNARVEDPDLWNDSTKAQKIMQERSALESALSGYREISGGVDDNIELIELAEMEDDGDMVAEAEAAIAALQEKAAKLQLESLLS--GEADSNNCFLEVHAGAGGTESQDWASMLLRMYMRYCDKQGFKTELLEESPGEEAGIKSTTIKVAGHNAYGWLKTEAGVHRLVRISPFDSNARRHTSFS 216
BLAST of mRNA_E-siliculosus-1a_F_contig1016.165.1 vs. uniprot
Match: A0A2D7FMH3_9PROT (Peptide chain release factor 2 n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D7FMH3_9PROT) HSP 1 Score: 188 bits (478), Expect = 1.050e-53 Identity = 97/207 (46.86%), Postives = 138/207 (66.67%), Query Frame = 3 Query: 306 VEECHLLLSSRLDIPALEARLAELDALVSDPKLYDDSTKAGKIVKERAKVESKLENVKSLNSELQSWREMYEMASLEEEGDLLTECIEKVGALRKQAERARAETLLSLGGELSSSNCYLELQAGAGGTESHDWTSMLYKMYTRWAETKAFTLRPLNSSPGDEAGLRSVMVFVEGESAYGWLRSEAGVHRLVRNSPYDPNGRRHTSFS 926 +E+ +LL LD RL EL+A DP L+ D T+A K+++ER ++E +E +L EL E+ EM E + ++++E E + L+KQA ETLLS GE S++C+LE+ AGAGGTES DW MLY+MY+RWAE + + ++ SPG+EAG++S V V+G +AYGWL++E+GVHRLVR SPYD + RRHTSF+ Sbjct: 12 IEQSLVLLRRHLDPEQSAKRLEELNAEAEDPDLWKDQTRAQKVMRERGRLEKSIERFTTLEKELGDSVELIEMGEAEYDAEVVSEAEETLVRLQKQATTQELETLLS--GEADSNDCFLEVNAGAGGTESQDWAQMLYRMYSRWAEAHGYKVELMDESPGEEAGIKSASVRVQGHNAYGWLKTESGVHRLVRISPYDSSARRHTSFA 216
BLAST of mRNA_E-siliculosus-1a_F_contig1016.165.1 vs. uniprot
Match: UPI0012BC2B27 (peptide chain release factor 2 n=1 Tax=Curvivirga aplysinae TaxID=2529852 RepID=UPI0012BC2B27) HSP 1 Score: 187 bits (475), Expect = 3.480e-53 Identity = 95/201 (47.26%), Postives = 140/201 (69.65%), Query Frame = 3 Query: 324 LLSSRLDIPALEARLAELDALVSDPKLYDDSTKAGKIVKERAKVESKLENVKSLNSELQSWREMYEMASLEEEGDLLTECIEKVGALRKQAERARAETLLSLGGELSSSNCYLELQAGAGGTESHDWTSMLYKMYTRWAETKAFTLRPLNSSPGDEAGLRSVMVFVEGESAYGWLRSEAGVHRLVRNSPYDPNGRRHTSFS 926 LLS +D+ E RL EL+A V DP L++DS +A K+++ERA ++S++ K L + L E+ EMA LE++ D+++E + A+R A + + E+LLS GE S+NC+LE+ AGAGGTES DW S+L +MYTRWA++K + + + S G+EAG++S + + G +AYGW+++E GVHRLVR SP+D RRHTSFS Sbjct: 18 LLSKHIDLDVSEKRLLELNARVEDPNLWNDSNEAQKVMQERAALDSQVTGYKELANGLDDNIELIEMAELEDDQDMISEAEAAIEAMRDIAAKLQLESLLS--GEADSNNCFLEIHAGAGGTESCDWASILLRMYTRWADSKGYKVETMEQSAGEEAGIKSTTLKIAGHNAYGWMKTENGVHRLVRISPFDSQARRHTSFS 216
BLAST of mRNA_E-siliculosus-1a_F_contig1016.165.1 vs. uniprot
Match: A0A848V5M3_9PROT (Peptide chain release factor 2 n=1 Tax=Hellea sp. TaxID=2715692 RepID=A0A848V5M3_9PROT) HSP 1 Score: 187 bits (474), Expect = 4.000e-53 Identity = 95/214 (44.39%), Postives = 144/214 (67.29%), Query Frame = 3 Query: 285 FEEDCEVVEECHLLLSSRLDIPALEARLAELDALVSDPKLYDDSTKAGKIVKERAKVESKLENVKSLNSELQSWREMYEMASLEEEGDLLTECIEKVGALRKQAERARAETLLSLGGELSSSNCYLELQAGAGGTESHDWTSMLYKMYTRWAETKAFTLRPLNSSPGDEAGLRSVMVFVEGESAYGWLRSEAGVHRLVRNSPYDPNGRRHTSFS 926 E+ + +E LL RLD E RLAEL+AL D +DD KA K+++ER+++E +N+K+++S+L + E+ E+A LE + +++ E E + L K+AE A E LLS G++ +++C+LE+ GAGGTE+ DW +ML +MY +WA ++ L GDEAG++S V ++GE+AYGWL++E+GVHRLVR SP+D N RRHTSF+ Sbjct: 5 IEQIKQAIEATLDLLRRRLDWETSERRLAELNALSEDQSFWDDPQKAQKLMRERSQLEGAFDNIKTIDSDLANILELIELAELENDDEMVGEAEEALQKLSKKAEEAELEALLS--GDVDANDCFLEIHPGAGGTEAQDWANMLLRMYIKWAASRGMKSEVLEEQAGDEAGIKSATVKIKGENAYGWLKTESGVHRLVRISPFDSNARRHTSFA 216
BLAST of mRNA_E-siliculosus-1a_F_contig1016.165.1 vs. uniprot
Match: A0A3M1Q4W7_9PROT (Peptide chain release factor 2 n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3M1Q4W7_9PROT) HSP 1 Score: 187 bits (474), Expect = 5.410e-53 Identity = 96/207 (46.38%), Postives = 140/207 (67.63%), Query Frame = 3 Query: 306 VEECHLLLSSRLDIPALEARLAELDALVSDPKLYDDSTKAGKIVKERAKVESKLENVKSLNSELQSWREMYEMASLEEEGDLLTECIEKVGALRKQAERARAETLLSLGGELSSSNCYLELQAGAGGTESHDWTSMLYKMYTRWAETKAFTLRPLNSSPGDEAGLRSVMVFVEGESAYGWLRSEAGVHRLVRNSPYDPNGRRHTSFS 926 + E LL D RLAEL+A DP L++D +A K+++ER ++ S++E + + EL S E+ EMA E + D++ ECI ++ AL ++A+ E+LLS GE +++CYLE+ AGAGGTES DW ML +MY RWAE + + + SPG+EAG++SV V ++GE+AYGWL++E+GVHRLVR SP+D + RRHTSF+ Sbjct: 12 IRESLTLLRRYFDWDHALDRLAELNAEAEDPDLWNDPERARKVMRERNRLASQIEATREMEDELASLVELVEMAEAEGDEDMVAECIGQLEALARRAKEKEIESLLS--GEADANDCYLEIHAGAGGTESQDWAEMLLRMYLRWAERRGYKTEIVQLSPGEEAGIKSVTVLIKGENAYGWLKTESGVHRLVRISPFDASARRHTSFA 216
BLAST of mRNA_E-siliculosus-1a_F_contig1016.165.1 vs. uniprot
Match: A0A550KK25_9PROT (Peptide chain release factor 2 n=1 Tax=Glycocaulis profundi TaxID=2518983 RepID=A0A550KK25_9PROT) HSP 1 Score: 184 bits (467), Expect = 4.840e-52 Identity = 94/207 (45.41%), Postives = 140/207 (67.63%), Query Frame = 3 Query: 306 VEECHLLLSSRLDIPALEARLAELDALVSDPKLYDDSTKAGKIVKERAKVESKLENVKSLNSELQSWREMYEMASLEEEGDLLTECIEKVGALRKQAERARAETLLSLGGELSSSNCYLELQAGAGGTESHDWTSMLYKMYTRWAETKAFTLRPLNSSPGDEAGLRSVMVFVEGESAYGWLRSEAGVHRLVRNSPYDPNGRRHTSFS 926 +E+ LL RLD + RL EL+A DP L+D+ KA +++ER ++E+ + V L SEL E+ E+A +E + DL E + + A+R +A +A + LLS GE S++ YLE+ GAGGTE+ DW SML +MY+RWA++ +++ + G+EAG++SV + ++GE+AYGWL++EAGVHRLVR SPYD +GRRHTSF+ Sbjct: 12 IEQSSELLRRRLDWDTAQKRLDELNARAEDPTLWDNPAKAQSLMRERNRLEAAMTEVSELESELADNIEVAELADMESDEDLYQEALTALKAVRARAGKAEIQALLS--GEADSNDSYLEIHPGAGGTEAQDWASMLARMYSRWAQSSGYSVEVIEEQAGEEAGIKSVTLLIKGENAYGWLKTEAGVHRLVRISPYDSSGRRHTSFA 216
BLAST of mRNA_E-siliculosus-1a_F_contig1016.165.1 vs. uniprot
Match: A0A6A7KTQ1_9PROT (Peptide chain release factor 2 n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A6A7KTQ1_9PROT) HSP 1 Score: 184 bits (467), Expect = 5.090e-52 Identity = 95/207 (45.89%), Postives = 137/207 (66.18%), Query Frame = 3 Query: 306 VEECHLLLSSRLDIPALEARLAELDALVSDPKLYDDSTKAGKIVKERAKVESKLENVKSLNSELQSWREMYEMASLEEEGDLLTECIEKVGALRKQAERARAETLLSLGGELSSSNCYLELQAGAGGTESHDWTSMLYKMYTRWAETKAFTLRPLNSSPGDEAGLRSVMVFVEGESAYGWLRSEAGVHRLVRNSPYDPNGRRHTSFS 926 +++ LL LD+ A + RL EL+AL DPKL+++ +A K+++ER +++ + + L S L+ E+ E+A E E D+ E + + ALR QA + E+LLS GE +++CYLE+ AGAGGTES DW ML +MYTRW+E + + + S GDEAGL+S + V G +AYGWL++E+GVHRLVR SPYD RRHTSF+ Sbjct: 12 IQQSLALLRRHLDLDAAKLRLEELNALAEDPKLWEEPERAQKVMRERTRLDDGIGSYLQLESSLKDNVELIELAETEGEADVAAEAEKALAALRDQAAKMELESLLS--GEADANDCYLEVHAGAGGTESQDWAEMLLRMYTRWSEQHGYKVEYIEESAGDEAGLKSATIRVSGVNAYGWLKTESGVHRLVRISPYDAASRRHTSFA 216
BLAST of mRNA_E-siliculosus-1a_F_contig1016.165.1 vs. uniprot
Match: A0A4V3RYB7_9PROT (Peptide chain release factor 2 n=1 Tax=Marinicauda algicola TaxID=2029849 RepID=A0A4V3RYB7_9PROT) HSP 1 Score: 183 bits (465), Expect = 9.350e-52 Identity = 97/210 (46.19%), Postives = 140/210 (66.67%), Query Frame = 3 Query: 300 EVVEECHLLLSSRLDIPALEARLAELDALVSDPKLYDDSTKAGKIVKERAKVESKLENVKSLNSELQSWREMYEMASLEEEGDLLTECIEKVGALRKQAERAR-AETLLSLGGELSSSNCYLELQAGAGGTESHDWTSMLYKMYTRWAETKAFTLRPLNSSPGDEAGLRSVMVFVEGESAYGWLRSEAGVHRLVRNSPYDPNGRRHTSFS 926 + +E+ LL RLD RL EL+A DP L+DD ++A +++ER K++S + V+ + SEL E+ E+A +EE+ LL E ALRK AERAR AE L GE +++C++E+ GAGGTE+ DW +ML +MY+RWA+ F + + G+EAGL+S + V+GE+AYGWL++EAG+HRLVR SP+D +GRRHTSF+ Sbjct: 10 DAIEQSTELLRRRLDWDTAGKRLDELNAKAEDPGLWDDPSRAQALMRERNKLDSAMTEVREIESELAENLEVAELAEMEEDESLLDEA---EAALRKLAERARRAELQALLSGEADANDCFVEIHPGAGGTEAQDWAAMLVRMYSRWAQASGFKVEVIEEQAGEEAGLKSATLHVKGENAYGWLKTEAGIHRLVRISPFDSSGRRHTSFA 216
BLAST of mRNA_E-siliculosus-1a_F_contig1016.165.1 vs. uniprot
Match: A0A2E9WWB3_9PROT (Peptide chain release factor 2 n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E9WWB3_9PROT) HSP 1 Score: 183 bits (465), Expect = 1.010e-51 Identity = 93/201 (46.27%), Postives = 136/201 (67.66%), Query Frame = 3 Query: 324 LLSSRLDIPALEARLAELDALVSDPKLYDDSTKAGKIVKERAKVESKLENVKSLNSELQSWREMYEMASLEEEGDLLTECIEKVGALRKQAERARAETLLSLGGELSSSNCYLELQAGAGGTESHDWTSMLYKMYTRWAETKAFTLRPLNSSPGDEAGLRSVMVFVEGESAYGWLRSEAGVHRLVRNSPYDPNGRRHTSFS 926 LL RLD+ E RLAEL+AL DP L++D +A K+++ER ++ES ++ + + SE E+ E+A+ E + D+ E + + AL + A + + E+LLS GE ++CYLE+ AGAGGTE+ DW M+ +MY RWAE + + + L S G+EAGL+S V V G++AYGWL++E+GVHRLVR SP+D RRHTSF+ Sbjct: 18 LLRRRLDLGTAEKRLAELNALAEDPDLWNDQVRAQKVMRERTRLESAIDGFRRMESEFSDTCELLELAAEEGDADMEAEAEKALQALARVAAKRQLESLLS--GEADGNDCYLEVHAGAGGTEAQDWAEMVLRMYLRWAEARGYKVEWLEESAGEEAGLKSATVRVNGDNAYGWLKTESGVHRLVRISPFDSQSRRHTSFA 216 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1016.165.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1016.165.1 >prot_E-siliculosus-1a_F_contig1016.165.1 ID=prot_E-siliculosus-1a_F_contig1016.165.1|Name=mRNA_E-siliculosus-1a_F_contig1016.165.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=307bp MWFTTMSPAGLRTLLARAGDVGLARRRSFQVPASLRTRCACLVTPQRRQQback to top mRNA from alignment at E-siliculosus-1a_F_contig1016:34750..38004+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1016.165.1 ID=mRNA_E-siliculosus-1a_F_contig1016.165.1|Name=mRNA_E-siliculosus-1a_F_contig1016.165.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3255bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1016:34750..38004+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1016:34750..38004+ >mRNA_E-siliculosus-1a_F_contig1016.165.1 ID=mRNA_E-siliculosus-1a_F_contig1016.165.1|Name=mRNA_E-siliculosus-1a_F_contig1016.165.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1842bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1016:34750..38004+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |