mRNA_E-siliculosus-1a_F_contig10158.161.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10158.161.1 vs. uniprot
Match: A0A6H5JXQ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXQ5_9PHAE) HSP 1 Score: 250 bits (638), Expect = 4.390e-79 Identity = 144/156 (92.31%), Postives = 144/156 (92.31%), Query Frame = 1 Query: 4 NQAELTEEEDSSLFFVQLPTKLPRPLAACQRGKDGASAPVRGKGKXXXXXGGPAVKEEAGESGTGGAAXXXXXXXXXXAAAEKASEIPADDVAFDQGLRRMRPGKIGKLYVHQSGKARLVIGGVSLVVHPGLPVSFVEQGVSIDAKQKTFCSFGQV 471
NQAELTEEEDSSLFFVQLPTKLPRPLAA QRGKDGASAPVRGKGK GGPAVKEEAGESG G XXXXXXXX AAAEKASEIPADDVAFDQGLRRMRPGKIGKLYVHQSGKARLVIGGVSLVVHPGLPVSFVEQGVSIDAKQKTFCSFGQV
Sbjct: 245 NQAELTEEEDSSLFFVQLPTKLPRPLAAFQRGKDGASAPVRGKGKGKAT-GGPAVKEEAGESGAGXXXXXXXXXXXKGAAAEKASEIPADDVAFDQGLRRMRPGKIGKLYVHQSGKARLVIGGVSLVVHPGLPVSFVEQGVSIDAKQKTFCSFGQV 399
BLAST of mRNA_E-siliculosus-1a_F_contig10158.161.1 vs. uniprot
Match: D8LHB7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHB7_ECTSI) HSP 1 Score: 245 bits (626), Expect = 1.520e-76 Identity = 147/157 (93.63%), Postives = 148/157 (94.27%), Query Frame = 1 Query: 4 NQAELTEEEDSSLFFVQLPTKLPRPLAACQRGKDGASAPVRGKGKXXXXX-GGPAVKEEAGESGTGGAAXXXXXXXXXXAAAEKASEIPADDVAFDQGLRRMRPGKIGKLYVHQSGKARLVIGGVSLVVHPGLPVSFVEQGVSIDAKQKTFCSFGQV 471
NQAELTEEEDSSLFFVQLPTKLPRPLAACQRGKDGASAPVRGKGKXXXX GGPAVKEEAGESG G XXXXXXXXXX AEKASEI ADDVAFD+GLRRMRPGKIGKLYVHQSGKARLVIGGVSLVVHPGLPVSFVEQGVSIDAKQKTFCSFGQV
Sbjct: 308 NQAELTEEEDSSLFFVQLPTKLPRPLAACQRGKDGASAPVRGKGKXXXXATGGPAVKEEAGESGAGXXXXXXXXXXXXXXXAEKASEIAADDVAFDRGLRRMRPGKIGKLYVHQSGKARLVIGGVSLVVHPGLPVSFVEQGVSIDAKQKTFCSFGQV 464
BLAST of mRNA_E-siliculosus-1a_F_contig10158.161.1 vs. uniprot
Match: A0A835ZEC9_9STRA (RNA polymerase III RPC4-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEC9_9STRA) HSP 1 Score: 74.3 bits (181), Expect = 1.430e-12 Identity = 55/154 (35.71%), Postives = 71/154 (46.10%), Query Frame = 1 Query: 10 AELTEEEDSSLFFVQLPTKLPRPLAACQRGKDGASAPVRGKGKXXXXXGGPAVKEEAGESGTGGAAXXXXXXXXXXAAAEKASEIPADDVAFDQGLRRMRPGKIGKLYVHQSGKARLVIGGVSLVVHPGLPVSFVEQGVSIDAKQKTFCSFGQV 471
A L EED +FFVQLPT LPR + S P G G G GT AAA+ + E +D L M PG+IGKL + +SG +L++ GV+L V G+P FVE+ ++ KQKT FGQV
Sbjct: 290 AALQAEEDEGIFFVQLPTALPRVFPESM---EHPSQPTDGGGD------GXXXXXHGAVGGT--------RAQGAKAAADTSGEADGSP-GYDNSLTTMLPGRIGKLQIRRSGTVQLLLAGVALDVSAGMPCHFVEELTCVNPKQKTMSMFGQV 425
BLAST of mRNA_E-siliculosus-1a_F_contig10158.161.1 vs. uniprot
Match: A0A7S3UWU6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWU6_HETAK) HSP 1 Score: 67.0 bits (162), Expect = 1.470e-11 Identity = 30/67 (44.78%), Postives = 44/67 (65.67%), Query Frame = 1 Query: 271 DDVAFDQGLRRMRPGKIGKLYVHQSGKARLVIGGVSLVVHPGLPVSFVEQGVSIDAKQKTFCSFGQV 471
+D D GLRR+ PG++G++ VH SG+ +L +G V PGLP FV+ V++DA+ T C FGQ+
Sbjct: 5 EDPVADGGLRRVAPGRVGRVRVHASGRVKLTLGDTVFDVAPGLPCHFVQDVVAVDAEGGTACFFGQL 71
BLAST of mRNA_E-siliculosus-1a_F_contig10158.161.1 vs. uniprot
Match: A0A6G0WW31_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WW31_9STRA) HSP 1 Score: 58.9 bits (141), Expect = 2.680e-7 Identity = 31/73 (42.47%), Postives = 45/73 (61.64%), Query Frame = 1 Query: 253 ASEIPADDVAFDQGLRRMRPGKIGKLYVHQSGKARLVIGGVSLVVHPGLPVSFVEQGVSIDAKQKTFCSFGQV 471
A+E DD+ FD+ L M G +GK+ +H+SGKA LV+G + + PG P +F E+ VSID K++ G V
Sbjct: 244 ATERSQDDL-FDKSLHAMPGGFMGKINIHKSGKAVLVLGDKTFNIAPGHPPTFYEEAVSIDTKEELLSMLGPV 315
BLAST of mRNA_E-siliculosus-1a_F_contig10158.161.1 vs. uniprot
Match: W4GQG3_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GQG3_9STRA) HSP 1 Score: 58.5 bits (140), Expect = 3.750e-7 Identity = 33/76 (43.42%), Postives = 44/76 (57.89%), Query Frame = 1 Query: 244 AEKASEIPADDVAFDQGLRRMRPGKIGKLYVHQSGKARLVIGGVSLVVHPGLPVSFVEQGVSIDAKQKTFCSFGQV 471
A K+SE + FD+ L M G +GK+ +H+SGKA LV+G + + PG P SF E+ VSID K K G V
Sbjct: 252 ASKSSEN-GTETRFDKSLSAMPGGYLGKINIHKSGKAVLVLGDKTFDLAPGQPPSFYEEVVSIDVKDKLLSMLGPV 326
BLAST of mRNA_E-siliculosus-1a_F_contig10158.161.1 vs. uniprot
Match: A0A6A5AC38_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AC38_9STRA) HSP 1 Score: 57.4 bits (137), Expect = 9.590e-7 Identity = 29/66 (43.94%), Postives = 39/66 (59.09%), Query Frame = 1 Query: 274 DVAFDQGLRRMRPGKIGKLYVHQSGKARLVIGGVSLVVHPGLPVSFVEQGVSIDAKQKTFCSFGQV 471
+ FD+ L M G +GK+ +H+SGKA LV+G + + PG P SF E+ VSID K K G V
Sbjct: 266 ETRFDKSLSAMPGGYLGKINIHKSGKAVLVLGDKTFDLAPGQPPSFYEEVVSIDVKDKLLSMLGPV 331
BLAST of mRNA_E-siliculosus-1a_F_contig10158.161.1 vs. uniprot
Match: A0A7S3VAP1_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VAP1_9STRA) HSP 1 Score: 55.8 bits (133), Expect = 3.760e-6 Identity = 29/84 (34.52%), Postives = 44/84 (52.38%), Query Frame = 1 Query: 241 AAEKASEIPADDVAFDQGLRRMRPGKIGKLYVHQSGKARLVIGG-------VSLVVHPGLPVSFVEQGVSIDAKQKTFCSFGQV 471
AA S +D L+ GK GK+ +H+SGKA LV+GG V +++ GLP F++Q V+ID ++ G+V
Sbjct: 420 AAAPTSSTNTSGAGYDDTLKDSAAGKYGKIVIHKSGKAYLVVGGADSKTPQVKMMLTEGLPCGFLQQAVAIDPNNASYVPLGEV 503
BLAST of mRNA_E-siliculosus-1a_F_contig10158.161.1 vs. uniprot
Match: A0A024TER0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TER0_9STRA) HSP 1 Score: 55.1 bits (131), Expect = 6.040e-6 Identity = 31/74 (41.89%), Postives = 43/74 (58.11%), Query Frame = 1 Query: 250 KASEIPADDVAFDQGLRRMRPGKIGKLYVHQSGKARLVIGGVSLVVHPGLPVSFVEQGVSIDAKQKTFCSFGQV 471
KA ADD+ FD+ L M G +GK+ +H+SGKA LV+G + + G P + E+ VSID K K F G +
Sbjct: 252 KAPNHGADDL-FDKSLLSMPGGYLGKINIHKSGKAVLVLGDKTFELAAGQPPACYEEVVSIDVKDKLFSMLGPI 324
BLAST of mRNA_E-siliculosus-1a_F_contig10158.161.1 vs. uniprot
Match: T1HGK6_RHOPR (Uncharacterized protein n=1 Tax=Rhodnius prolixus TaxID=13249 RepID=T1HGK6_RHOPR) HSP 1 Score: 52.0 bits (123), Expect = 8.710e-6 Identity = 26/54 (48.15%), Postives = 36/54 (66.67%), Query Frame = 1 Query: 295 LRRMRPGKIGKLYVHQSGKARLVIGGVSLVVHPGLPVSFVEQ--GVSIDAKQKT 450
LR + PG+IGKL + +SGKARL++G V L V PG +F + V++D QKT
Sbjct: 26 LRNLPPGRIGKLQILKSGKARLILGDVKLWVEPGTQTAFKQDLISVNLDPNQKT 79 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10158.161.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 14 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10158.161.1 >prot_E-siliculosus-1a_F_contig10158.161.1 ID=prot_E-siliculosus-1a_F_contig10158.161.1|Name=mRNA_E-siliculosus-1a_F_contig10158.161.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=157bp QNQAELTEEEDSSLFFVQLPTKLPRPLAACQRGKDGASAPVRGKGKGKGKback to top mRNA from alignment at E-siliculosus-1a_F_contig10158:747..2526+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig10158.161.1 ID=mRNA_E-siliculosus-1a_F_contig10158.161.1|Name=mRNA_E-siliculosus-1a_F_contig10158.161.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1780bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10158:747..2526+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10158:747..2526+ >mRNA_E-siliculosus-1a_F_contig10158.161.1 ID=mRNA_E-siliculosus-1a_F_contig10158.161.1|Name=mRNA_E-siliculosus-1a_F_contig10158.161.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=942bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10158:747..2526+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |