mRNA_E-siliculosus-1a_F_contig10151.160.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10151.160.1 vs. uniprot
Match: D7FJ76_ECTSI (Ferric reductase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ76_ECTSI) HSP 1 Score: 366 bits (939), Expect = 6.800e-123 Identity = 242/339 (71.39%), Postives = 252/339 (74.34%), Query Frame = 1 Query: 1 TSQSVSSDFFLMVGSDAAVGLPDESAVVEYDLIVRTVAGVVPPKAQDITGDSVGQDVSGTTLSFTRPLAPANKQAISGTPGDETIFIYAFGEDNELAFHGLAPNRGSLVLDLFCGDG---DGATVAGTPAPTVGGTPAASEASSAAPIDTDTPTAAPTM----------------------------------AVSRTPPSSTLSMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPTGTAGMTGSETMAPSAADGDRGVDVPGDTGAPTDASDSLLMTESPSSAGEGLVEEETDGALRVGGGGRWAAAAATGFVTVLAVLSSL 906
TS SSD +M+GSDA +GLPDESAV EYDLI +T AGV+P QDITG SV QD SGTTLSFTRPLAPANKQAISGTPGDETIF+YAFG DNEL FHGLAPNRGSLVLDLFCGDG DGATVAGTPAPTVGGTP ASEASSAAPI DTPTAAPT AVS TPPSSTLS+ XXXXXXXXXXXXXXXXXXX PTG AGMTGSETMAPSAADGDRGVDVPG+T APTDASDSLL+TESPS+AGEGLVEEETDGALRVGGGGRWAAAAATGFVTVLAVLSSL
Sbjct: 72 TSLGFSSDL-MMIGSDAVIGLPDESAVEEYDLISQTTAGVLPSATQDITGGSVSQDASGTTLSFTRPLAPANKQAISGTPGDETIFLYAFGGDNELGFHGLAPNRGSLVLDLFCGDGGDGDGATVAGTPAPTVGGTPTASEASSAAPIAADTPTAAPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVSGTPPSSTLSVAXXXXXXXXXXXXXXXXXXXGVEGSTSS-----------------PTGAAGMTGSETMAPSAADGDRGVDVPGETRAPTDASDSLLITESPSAAGEGLVEEETDGALRVGGGGRWAAAAATGFVTVLAVLSSL 392
BLAST of mRNA_E-siliculosus-1a_F_contig10151.160.1 vs. uniprot
Match: A0A6H5JN46_9PHAE (DOMON domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN46_9PHAE) HSP 1 Score: 339 bits (870), Expect = 1.190e-112 Identity = 236/307 (76.87%), Postives = 242/307 (78.83%), Query Frame = 1 Query: 1 TSQSVSSDFFLMVGSDAAVGLPDESAVVEYDLIVRTVAGVVPPKAQDITGDSVGQDVSGTTLSFTRPLAPANKQAISGTPGDETIFIYAFGEDNELAFHGLAPNRGSLVLDLFCGDG-DGATVAGTPAPTVGGTPAASEASSAAPIDTDTPTAAPTMAVSRTPPSSTLSMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPTGTAGM----TGSETMAPSAADGDRGVDVPGDTGAPTDASDSLLMTESPSSAGEGLVEEETDGALRVGGGGRWAAAAATGFVTVLAVLSSL 906
TS SSD MVGSDA +GLP+ES V EYDL +AGVV QDITG SV QD SGTTLSFTRPLAPANKQAISGTPGDETIFIYAFGE NELAFHG APNRG L LDLFCG+G DGATVAGTPAPT ASEASS API DT TAAPTMAVS TPPSSTLSM XXXXXXXXXXXXXXXXXXXXXXXXXXXX T TGSETMAPSAADGDRGVDVPG+TGAPTDASDSL MTESPSSAGEG V+EETDGALRVGGGGRWAAAAATGFVTVLAVLSSL
Sbjct: 72 TSLGFSSDLS-MVGSDAVIGLPEESTVEEYDLTSHALAGVVLSSTQDITGGSVSQDASGTTLSFTRPLAPANKQAISGTPGDETIFIYAFGEGNELAFHGQAPNRGDLTLDLFCGEGGDGATVAGTPAPTXXXXXXASEASSTAPIAADTLTAAPTMAVSGTPPSSTLSMAPTTVETETGSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGVEASTXXXXXXXXXTGSETMAPSAADGDRGVDVPGETGAPTDASDSLRMTESPSSAGEGPVDEETDGALRVGGGGRWAAAAATGFVTVLAVLSSL 377
BLAST of mRNA_E-siliculosus-1a_F_contig10151.160.1 vs. uniprot
Match: D7FYB8_ECTSI (Ferric reductase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYB8_ECTSI) HSP 1 Score: 181 bits (460), Expect = 3.400e-52 Identity = 91/125 (72.80%), Postives = 98/125 (78.40%), Query Frame = 1 Query: 34 MVGSDAAVGLPDESAVVEYDLIVRTVAGVVPPKAQDITGDSVGQDVSGTTLSFTRPLAPANKQAISGTPGDETIFIYAFGEDNELAFHGLAPNRGSLVLDLFCGDG----DGATVAGTPAPTVGG 396
M+GSDA +GLPDES V EYDL +T A V QDITG V QD SGTTLSFTRPLAP NKQAISGTPGDETIF++AFG DNEL +HGL PNRGSLVLDLFCGDG D TV GTPAPT+GG
Sbjct: 1 MIGSDAVIGLPDESTVEEYDLTSQTTARVFSSATQDITGGLVSQDASGTTLSFTRPLAPTNKQAISGTPGDETIFLFAFGADNELGYHGLPPNRGSLVLDLFCGDGGDGSDDVTVVGTPAPTLGG 125
BLAST of mRNA_E-siliculosus-1a_F_contig10151.160.1 vs. uniprot
Match: D7FJ77_ECTSI (Ferric reductase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ77_ECTSI) HSP 1 Score: 96.7 bits (239), Expect = 1.570e-19 Identity = 69/149 (46.31%), Postives = 83/149 (55.70%), Query Frame = 1 Query: 34 MVGSDAAVGLPDESAVVEYDLIVRTVAGVVPPKAQDITGDSVGQDVSGTTLSFTRPLAPA-NKQAISGTPGDETIFIYAFGEDNELAFHGLAPNRGSLVLDLFCGDGDGATVAGTPAPTV--GGTPAASEASSAAPIDTDTPTAAPTMA 471
+VGSD +GLPD S+V+EY+++ T VV + QDIT S+ Q TTLSF RPL+P NKQ IS GD T I+ G DNEL G V DL+CG G A +A TPAPTV GGT +T PT APT A
Sbjct: 82 LVGSDVIIGLPDNSSVLEYEVLGETAEEVVVFEQQDITEASIVQADGSTTLSFIRPLSPGGNKQNISYVAGDATKLIFGQGADNELGVISDVTWSGMRV-DLYCGTGGIAALARTPAPTVVGGGTG-----------ETPAPTLAPTAA 218
BLAST of mRNA_E-siliculosus-1a_F_contig10151.160.1 vs. uniprot
Match: A0A6H5JKV6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JKV6_9PHAE) HSP 1 Score: 79.3 bits (194), Expect = 7.920e-13 Identity = 46/108 (42.59%), Postives = 62/108 (57.41%), Query Frame = 1 Query: 34 MVGSDAAVGLPDESAVVEYDLIVRTVAGVVPPKAQDITGDSVGQDVSGTTLSFTRPLAPAN--KQAISGTPGDETIFIYAFGEDNELAFHGLAPNRGSL-VLDLFCGD 348
MV +DA VGLPDE +EYDL ++ + Q+I+G SV Q S TTL FTRPL+PA+ K +S G++ FI+A+G N +H RG V DL C +
Sbjct: 80 MVPADAVVGLPDEGTALEYDLSTYALSSDNEHETQEISGASVTQADSTTTLVFTRPLSPADDSKTVLSAEEGEKATFIWAYGSSNTFQYHEA---RGDFTVSDLLCSE 184 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10151.160.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 5 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10151.160.1 >prot_E-siliculosus-1a_F_contig10151.160.1 ID=prot_E-siliculosus-1a_F_contig10151.160.1|Name=mRNA_E-siliculosus-1a_F_contig10151.160.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=303bp TSQSVSSDFFLMVGSDAAVGLPDESAVVEYDLIVRTVAGVVPPKAQDITGback to top mRNA from alignment at E-siliculosus-1a_F_contig10151:476..1940- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig10151.160.1 ID=mRNA_E-siliculosus-1a_F_contig10151.160.1|Name=mRNA_E-siliculosus-1a_F_contig10151.160.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1465bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10151:476..1940- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10151:476..1940- >mRNA_E-siliculosus-1a_F_contig10151.160.1 ID=mRNA_E-siliculosus-1a_F_contig10151.160.1|Name=mRNA_E-siliculosus-1a_F_contig10151.160.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1818bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10151:476..1940- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |