mRNA_E-siliculosus-1a_F_contig10150.159.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10150.159.1 vs. uniprot
Match: D7FVZ4_ECTSI (Ferredoxin nitrite reductase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVZ4_ECTSI) HSP 1 Score: 419 bits (1078), Expect = 5.570e-142 Identity = 206/212 (97.17%), Postives = 210/212 (99.06%), Query Frame = 1 Query: 1 SGMDNVRNMVGSPIAGLDPLEMVDTRQLCNEINDMITDNRKGNPALTNLPRKINIAISGGRDDYAHTMINDIGLQPHAHPETGEIGFNVVVGGFFSVKRAAESIPLDMWIKQSDTVAFCKGMLLAFRNLGPRKKRQEARLMFMIEEMGMEKFRETVVEYVKGVDSAFEPQPAAPAPEEAFSRRDYVGAHPQKQEGKSWVCVTTPAGRLMAED 636 +GMDNVRNMVGSPIAGLDPLEMVDTRQLCNEINDMITDNRKGNPALTNLPRKINIAISGGRDDYAHTMINDIGLQPHAHPETGEIGFNVVVGGFFSV+RAAESIPLDMWIKQ+DTVAFCKGMLLAFRNLG RKKRQEARLMFMIEEMGMEKFRETVVEYVKGVDSAFEPQPAAPAPEEAFSRR+YVG HPQKQEGKSWVCVTTPAGRLMAED Sbjct: 251 TGMDNVRNMVGSPIAGLDPLEMVDTRQLCNEINDMITDNRKGNPALTNLPRKINIAISGGRDDYAHTMINDIGLQPHAHPETGEIGFNVVVGGFFSVRRAAESIPLDMWIKQNDTVAFCKGMLLAFRNLGSRKKRQEARLMFMIEEMGMEKFRETVVEYVKGVDSAFEPQPAAPAPEEAFSRRNYVGVHPQKQEGKSWVCVTTPAGRLMAED 462
BLAST of mRNA_E-siliculosus-1a_F_contig10150.159.1 vs. uniprot
Match: A0A2V3J4B2_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J4B2_9FLOR) HSP 1 Score: 262 bits (670), Expect = 6.700e-82 Identity = 129/213 (60.56%), Postives = 161/213 (75.59%), Query Frame = 1 Query: 1 SGMDNVRNMVGSPIAGLDPLEMVDTRQLCNEINDMITDNRKGNPALTNLPRKINIAISGGRDDYAHTMINDIGLQPHAHPETGEIGFNVVVGGFFSVKRAAESIPLDMWIKQSDTVAFCKGMLLAFRNLGPRKKRQEARLMFMIEEMGMEKFRETVVEYVKG-VDSAFEPQPAAPAPEEAFSRRDYVGAHPQKQEGKSWVCVTTPAGRLMAED 636 SGMDNVRN+VGSP+AG+DPLEMVDTRQLC++INDMITD+RKG P LTNLPRK NIA+SG RDD+AHT INDIGL P AHP+T IGFNVV+GGFFS+KR AE++P+D+W+ QSD V FC+ +LL FR+ G RK RQ RLM+M++++GM+ FR+ + + + A + P P E RR+ +G HPQKQ G SWV PAGRL D Sbjct: 152 SGMDNVRNLVGSPLAGIDPLEMVDTRQLCHDINDMITDSRKGRPQLTNLPRKFNIAVSGSRDDFAHTHINDIGLVPMAHPQTAHIGFNVVIGGFFSIKRDAEALPMDVWLPQSDVVRFCETVLLWFRDHGDRKNRQATRLMYMVDQLGMKTFRDQIESAMGAPLQRAVKGGPEYDQPAE---RRNVLGVHPQKQPGLSWVAACVPAGRLETAD 361
BLAST of mRNA_E-siliculosus-1a_F_contig10150.159.1 vs. uniprot
Match: R7QAL9_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QAL9_CHOCR) HSP 1 Score: 259 bits (661), Expect = 4.710e-80 Identity = 130/217 (59.91%), Postives = 160/217 (73.73%), Query Frame = 1 Query: 1 SGMDNVRNMVGSPIAGLDPLEMVDTRQLCNEINDMITDNRKGNPALTNLPRKINIAISGGRDDYAHTMINDIGLQPHAHPETGEIGFNVVVGGFFSVKRAAESIPLDMWIKQSDTVAFCKGMLLAFRNLGPRKKRQEARLMFMIEEMGMEKFRETVVE-----YVKGVDSAFEPQPAAPAPEEAFSRRDYVGAHPQKQEGKSWVCVTTPAGRLMAED 636 SGMDNVRNMVGSPIAG+DP E+VDTR+LC INDMIT+NR+GNPALTNLPRK NI +SG RDD+AHT IND+GL P HP T E+GFNVV+GGFFS+KR AE+IP+D+W+ D V FC+ +L+ FR+ G RK R +RLM+M++++ M FRE + E + + VD E A PAP RR+ +G H QKQEG SWVC PAGRL AED Sbjct: 200 SGMDNVRNMVGSPIAGIDPEEIVDTRELCIAINDMITNNRRGNPALTNLPRKFNICVSGSRDDFAHTHINDVGLVPMVHPTTKEVGFNVVIGGFFSIKRNAEAIPMDVWLPYKDVVRFCETLLIWFRDNGDRKNRMSSRLMYMVDKLTMSGFREVIQEEFGSKFRRAVDGGEEY--ATPAP-----RRNVLGVHAQKQEGLSWVCGNVPAGRLTAED 409
BLAST of mRNA_E-siliculosus-1a_F_contig10150.159.1 vs. uniprot
Match: A0A7S0D8G4_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0D8G4_9EUKA) HSP 1 Score: 244 bits (623), Expect = 2.040e-74 Identity = 123/221 (55.66%), Postives = 163/221 (73.76%), Query Frame = 1 Query: 1 SGMDNVRNMVGSPIAGLDPLEMVDTRQLCNEINDMITDNRKGNPALTNLPRKINIAISGGRDDYAHTMINDIGLQPHAHPETGEIGFNVVVGGFFSVKRAAESIPLDMWIKQSDTVAFCKGMLLAFRNLGPRKKRQEARLMFMIEEMGMEKFRETVVEYVKGVDSAFEPQPAA-----PAPEEA--FSRRDYVGAHPQKQEGKSWVCVTTPAGRLMAEDVS 642 SGMDNVRN+VG+PIAGLDP EM+DTR LC INDMIT++ KGNPA+TNLPRK NIA+SG RDD+AHT INDIGL P + ETGE+GFNV+VGG+FS+KR ESIP+D+W+K D FC+ ML FR+ G R RQ+ARL+++IE+ G++KFR+TV E D+ F + A P P + +++RD +G H QKQ+G S+V V P GR++ ++ + Sbjct: 181 SGMDNVRNLVGNPIAGLDPHEMIDTRPLCKSINDMITNSGKGNPAMTNLPRKFNIAVSGSRDDFAHTTINDIGLCPCPNKETGEMGFNVIVGGYFSIKRVMESIPMDLWVKPEDATDFCEVMLEVFRDNGDRGDRQKARLIWLIEKWGLDKFRDTVKE---AFDAKFPSKAGALISSQPEPWKGTTWAKRDLLGVHEQKQDGLSFVGVNVPVGRILPDEAN 398
BLAST of mRNA_E-siliculosus-1a_F_contig10150.159.1 vs. uniprot
Match: A0A6S9KFP9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9KFP9_HETAK) HSP 1 Score: 243 bits (621), Expect = 3.460e-74 Identity = 125/214 (58.41%), Postives = 154/214 (71.96%), Query Frame = 1 Query: 1 SGMDNVRNMVGSPIAGLDPLEMVDTRQLCNEINDMITDNRKGNPALTNLPRKINIAISGGRDDYAHTMINDIGLQPHAHPETGEIGFNVVVGGFFSVKRAAESIPLDMWIKQSDTVAFCKGMLLAFRNLGPR-KKRQEARLMFMIEEMGMEKFRETVVEYVKGVDSAFEPQPAAPAPEEAFSRRDYVGAHPQKQEGKSWVCVTTPAGRLMAEDV 639 SGMDNVRNMVGSPIAG+DP EM+DTRQLC ++ MIT++ KG P TNLPRK+N AISG RDDYAHT IND+G QP A+ E G++GFNVVVGG+FS+K A ESIPL+MW+ V + + FR+ G R K RQ+ R+M +IE+MG+E FR VV + +D A E A P PE+ + +RD +G H QKQEG SWV V PAGRL EDV Sbjct: 193 SGMDNVRNMVGSPIAGIDPHEMIDTRQLCIDMQKMITNDNKGRPEYTNLPRKMNFAISGSRDDYAHTSINDVGFQPIANAE-GKMGFNVVVGGYFSIKAAVESIPLNMWVPPEAVVPLSEAFIRYFRDNGQRVKDRQKTRMMILIEQMGVEAFRAGVVAELAKLDPAVETFEAVPEPEDVWEKRDLMGIHAQKQEGLSWVGVVVPAGRLFPEDV 405
BLAST of mRNA_E-siliculosus-1a_F_contig10150.159.1 vs. uniprot
Match: A0A7S1TF51_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TF51_9RHOD) HSP 1 Score: 242 bits (617), Expect = 1.160e-73 Identity = 117/212 (55.19%), Postives = 151/212 (71.23%), Query Frame = 1 Query: 1 SGMDNVRNMVGSPIAGLDPLEMVDTRQLCNEINDMITDNRKGNPALTNLPRKINIAISGGRDDYAHTMINDIGLQPHAHPETGEIGFNVVVGGFFSVKRAAESIPLDMWIKQSDTVAFCKGMLLAFRNLGPRKKRQEARLMFMIEEMGMEKFRETVVEYVKGVDSAFEPQPAAPAPEEAFSRRDYVGAHPQKQEGKSWVCVTTPAGRLMAED 636 +GMDNVRN+VGSPIAG+DP E+ DTR+LC I+DMIT+NR GNP +NLPRK NI +SG RDD+AHT IND+G P H ETGEIGFNVVVGG FS+KR S+PL++WI S+ V FC+ +L FR+ G R RQ AR M+++++ G++ RE V++ + + E QP + EE F RRD +G HPQKQEG W+ V P GR+ A D Sbjct: 185 TGMDNVRNLVGSPIAGIDPEELFDTRELCANISDMITNNRAGNPQFSNLPRKFNICVSGSRDDFAHTHINDLGFIPVPHRETGEIGFNVVVGGLFSIKRNEMSVPLNLWIHPSNVVEFCRAVLTVFRDHGARVSRQSARFMYLVDQWGVDTLRERVLQAMAVPVDSIEAQPES---EEVFHRRDVLGVHPQKQEGLFWLGVNVPVGRMSAHD 393
BLAST of mRNA_E-siliculosus-1a_F_contig10150.159.1 vs. uniprot
Match: A0A1X6P1I5_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P1I5_PORUM) HSP 1 Score: 238 bits (608), Expect = 4.510e-72 Identity = 123/215 (57.21%), Postives = 153/215 (71.16%), Query Frame = 1 Query: 1 SGMDNVRNMVGSPIAGLDPLEMVDTRQLCNEINDMITDNRKGNPALTNLPRKINIAISGGRDDYAHTMINDIGLQPHAHPETGEIGFNVVVGGFFSVKRAAESIPLDMWIKQSDTVAFCKGMLLAFRNLGPRKKRQEARLMFMIEEMGMEKFRETVVEYVKGVDSAFEPQPAA-PAPE--EAFSRRDYVGAHPQKQEGKSWVCVTTPAGRLMAED 636 +GMD+VRNMVGSPIAG+DP EM+DTR+LC E+NDMIT+ RKGNP TNLPRK NI +SG RDD+AHT INDIGL P + + G +GFNVVVGG FS+KR AE++P+D W+ + FCK +L FR+ G RK RQ+ RLM+MI++ G + R+ VVE++ G A PA P PE + RRD G H QKQEG SWV PAGRL A+D Sbjct: 213 AGMDSVRNMVGSPIAGIDPHEMIDTRELCTELNDMITNFRKGNPEFTNLPRKFNICVSGSRDDFAHTHINDIGLVPMVNAD-GVVGFNVVVGGMFSIKRDAEAVPMDAWLTPAQVTPFCKALLEVFRDQGDRKIRQKTRLMYMIDQWGADGLRDRVVEHMGGTPFA----PAVIPGPEYDTPWPRRDIQGVHAQKQEGLSWVGCNVPAGRLTADD 422
BLAST of mRNA_E-siliculosus-1a_F_contig10150.159.1 vs. uniprot
Match: Q7XYQ0_BIGNA (Ferredoxin nitrite reductase n=1 Tax=Bigelowiella natans TaxID=227086 RepID=Q7XYQ0_BIGNA) HSP 1 Score: 238 bits (606), Expect = 2.360e-71 Identity = 119/225 (52.89%), Postives = 159/225 (70.67%), Query Frame = 1 Query: 1 SGMDNVRNMVGSPIAGLDPLEMVDTRQLCNEINDMITDNRKGNPALTNLPRKINIAISGGRDDYAHTMINDIGLQPHAHPETGEIGFNVVVGGFFSVKRAAESIPLDMWIKQSDTVAFCKGMLLAFRNLGPRKKRQEARLMFMIEEMGMEKFRETVVEYVK--------GVDSAFEPQPAAPA-----PEEAFSRRDYVGAHPQKQEGKSWVCVTTPAGRLMAED 636 SGMDNVRN+VGSPIAG+DP E+VDTR + +I+ MIT++ KGNP L NLPRK NIA+SG RDD+AHT INDIGL+P + E+GE+GFNV+VGG+FS+KR ESIP+D+WIK D FC+ +LL FR+ G R RQ+ARL+++IE+MGME FR+ + + G +P+P A A P + +RD + H QKQEG SWV + PAGR++ ++ Sbjct: 233 SGMDNVRNLVGSPIAGIDPEELVDTRDIAKDIDAMITNDGKGNPKLANLPRKFNIAVSGSRDDFAHTSINDIGLRPCPNKESGEMGFNVIVGGYFSIKRVMESIPMDIWIKAEDAARFCEAVLLYFRDNGSRGDRQKARLIWLIEDMGMEGFRQAISDKYDEMFPKKKGGAAIPAQPEPWAVAAGTNTPTQPHKKRDILRVHSQKQEGLSWVGINVPAGRILPDE 457
BLAST of mRNA_E-siliculosus-1a_F_contig10150.159.1 vs. uniprot
Match: A0A8J5XYI8_DIALT (Uncharacterized protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XYI8_DIALT) HSP 1 Score: 234 bits (598), Expect = 1.600e-70 Identity = 121/216 (56.02%), Postives = 154/216 (71.30%), Query Frame = 1 Query: 1 SGMDNVRNMVGSPIAGLDPLEMVDTRQLCNEINDMITDNRKGNPALTNLPRKINIAISGGRDDYAHTMINDIGLQPHAHPET-GEIGFNVVVGGFFSVKRAAESIPLDMWIKQSDTVAFCKGMLLAFRNLGPRKKRQEARLMFMIEEMGMEKFRETVVEYV--KGVDSAFEPQPAAPAPEEAFSRRDYVGAHPQKQEGKSWVCVTTPAGRLMAEDV 639 SG+DNVRN+VGSPIAGLDP E+VDTR +C +IN IT +GNP NLPRK NIA+SG RDD++HT INDIGLQ HP+ E GFN+V+GG+FS+KR AESIP+ W+ D AF +L FR+ G R+ RQ+ RLM+++EE G++ FR V E + +GVD+ + AAP P +AFSRRD +G H Q+QEGKSWV VT P GRL +V Sbjct: 210 SGLDNVRNLVGSPIAGLDPHELVDTRPVCAQINSDITGAFRGNPEWANLPRKFNIAVSGSRDDFSHTTINDIGLQAAVHPDCPSEPGFNIVLGGYFSIKRVAESIPMGAWVSARDAPAFSLAVLEVFRDYGRREDRQKTRLMWLLEERGLDWFRAMVNEILARRGVDAL---RAAAPPPADAFSRRDLLGVHTQRQEGKSWVGVTVPVGRLSVGEV 422
BLAST of mRNA_E-siliculosus-1a_F_contig10150.159.1 vs. uniprot
Match: A0A1E7FE99_9STRA (Ferredoxin-nitrite reductase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FE99_9STRA) HSP 1 Score: 231 bits (588), Expect = 1.630e-69 Identity = 119/218 (54.59%), Postives = 150/218 (68.81%), Query Frame = 1 Query: 1 SGMDNVRNMVGSPIAGLDPLEMVDTRQLCNEINDMIT----DNRKGNPALTNLPRKINIAISGGRDDYAHTMINDIGLQPHAHPETGEIGFNVVVGGFFSVKRAAESIPLDMWIK--QSDTVAFCKGMLLAFRNLGPRKKRQEARLMFMIEEMGMEKFRETVVEYVKGVDSAFEPQPAAPAPEEAFSRRDYVGAHPQKQEGKSWVCVTTPAGRLMAED 636 S +D+VRNMVGSP+AG+D E+VDTR LCN +ND+I+ +GNP NLPRK NIAISG RDD+AHT INDIGLQP H ETGE+GFNVV+GGF S+KR AES+ MWIK + V FC+ +L FR+ RK RQ+ARLM+++E+ G+E F++ V+ VK D E P P E F RR+ +G HPQKQ GK V + PAGRL A + Sbjct: 152 SALDSVRNMVGSPLAGIDDHELVDTRVLCNAVNDLISMDPETETRGNPQWANLPRKFNIAISGSRDDFAHTHINDIGLQPCVHAETGEMGFNVVLGGFMSIKRVAESVDSGMWIKADRESVVTFCEAILRIFRDESERKDRQKARLMWLVEKYGVEDFKKAVIAEVKSYDRGVEIFDEQPRPTEKFERRELLGVHPQKQVGKVRVGIMVPAGRLSATE 369 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10150.159.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10150.159.1 >prot_E-siliculosus-1a_F_contig10150.159.1 ID=prot_E-siliculosus-1a_F_contig10150.159.1|Name=mRNA_E-siliculosus-1a_F_contig10150.159.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=213bp MDNVRNMVGSPIAGLDPLEMVDTRQLCNEINDMITDNRKGNPALTNLPRKback to top mRNA from alignment at E-siliculosus-1a_F_contig10150:375..2641+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig10150.159.1 ID=mRNA_E-siliculosus-1a_F_contig10150.159.1|Name=mRNA_E-siliculosus-1a_F_contig10150.159.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2267bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10150:375..2641+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10150:375..2641+ >mRNA_E-siliculosus-1a_F_contig10150.159.1 ID=mRNA_E-siliculosus-1a_F_contig10150.159.1|Name=mRNA_E-siliculosus-1a_F_contig10150.159.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1278bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10150:375..2641+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |