mRNA_E-siliculosus-1a_F_contig1015.154.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1015.154.1 vs. uniprot
Match: A0A6H5KXR1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXR1_9PHAE) HSP 1 Score: 305 bits (780), Expect = 1.500e-91 Identity = 230/301 (76.41%), Postives = 236/301 (78.41%), Query Frame = 2 Query: 2 LKGLLECGRSLRMEGTFQGDLISTGRVVVAPTGKIKGDLKGLKFLLVEGQVVGDVVCDEVMVVNEGKVFGDISSARVTVGPQSTMRGRLTVVEDMDELAQLLLNEEGKEXXXXXXXXXXXXXXXXXXXAEDTSEVAASAPAAXXXXTPAAGDAPEDTAVSGKDDGLVEDESGDVTTSDAPXXXXXXXXXXXXXXXXXXXXXXXXXDSDEGQEDQEYAEKEDDLEDAAGVVAIATADAAAKAVEGGEVDTAAAGVVEEAMVVSVKEQHPKDGEGDACTLVTPEDSKEDYEDAMDDLAGLSFA 904
LKG+LECGRSLRMEGTFQGDLISTGRVVVAPTG DVVCDEVMVVNEGKVFGDISSARVTVGPQST+RGRLTVVEDMDELAQLLL+EEGK XXXXXXXXXXXXXXXXXXX X AGDAPEDTAVSGKDDGL XXXXXXXXXXXXXXXXXXX +SDEGQEDQEYA+KEDDLEDAAGVVAIATADAA KAVEGGEVDTA AGV EEAMVVSV EQHPKDGEGDACTLVTPEDSKED+EDAMDDLAGLSFA
Sbjct: 714 LKGMLECGRSLRMEGTFQGDLISTGRVVVAPTGXXXXXXXXXXXXXXXXXXXXDVVCDEVMVVNEGKVFGDISSARVTVGPQSTIRGRLTVVEDMDELAQLLLSEEGKXXXXXXXXXXXXXXXXXXXXXXXXXXX----------XXXXAGDAPEDTAVSGKDDGLXXXXX--XXXXXXXXXXXXXXXXXXXXXXXXXXEPEAETESDEGQEDQEYADKEDDLEDAAGVVAIATADAAGKAVEGGEVDTATAGV-EEAMVVSVMEQHPKDGEGDACTLVTPEDSKEDFEDAMDDLAGLSFA 1001
BLAST of mRNA_E-siliculosus-1a_F_contig1015.154.1 vs. uniprot
Match: D8LQJ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQJ1_ECTSI) HSP 1 Score: 271 bits (694), Expect = 2.870e-85 Identity = 200/301 (66.45%), Postives = 202/301 (67.11%), Query Frame = 2 Query: 2 LKGLLECGRSLRMEGTFQGDLISTGRVVVAPTGKIKGDLKGLKFLLVEGQVVGDVVCDEVMVVNEGKVFGDISSARVTVGPQSTMRGRLTVVEDMDELAQLLLNEEGKEXXXXXXXXXXXXXXXXXXXAEDTSEVAASAPAAXXXXTPAAGDAPEDTAVSGKDDGLVEDESGDVTTSDAPXXXXXXXXXXXXXXXXXXXXXXXXXDSDEGQEDQEYAEKEDDLEDAAGVVAIATADAAAKAVEGGEVDTAAAGVVEEAMVVSVKEQHPKDGEGDACTLVTPEDSKEDYEDAMDDLAGLSFA 904
L GLLECGRSLRMEGTFQGDLISTGRVVVAPTGKIKG LKGLKFLLVEGQV GDVVC+EVMVVNEGKVFGDISSARVTVGPQ DTAVSGKD XXXXXXXXXXXXXXXXXXXXXXXXX EGQED+EYAEKED EDAAGVVAIATADAAAKAVEGGEVDTA AGVVEEAMVVSVKEQHPKDGEGDACTLVTPEDSKEDYEDAMDDLAGLSFA
Sbjct: 126 LTGLLECGRSLRMEGTFQGDLISTGRVVVAPTGKIKGHLKGLKFLLVEGQVDGDVVCEEVMVVNEGKVFGDISSARVTVGPQ-------------------------------------------------------------------------DTAVSGKDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGQEDEEYAEKEDGSEDAAGVVAIATADAAAKAVEGGEVDTATAGVVEEAMVVSVKEQHPKDGEGDACTLVTPEDSKEDYEDAMDDLAGLSFA 353
BLAST of mRNA_E-siliculosus-1a_F_contig1015.154.1 vs. uniprot
Match: D7G0L1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0L1_ECTSI) HSP 1 Score: 68.2 bits (165), Expect = 1.130e-9 Identity = 35/87 (40.23%), Postives = 58/87 (66.67%), Query Frame = 2 Query: 2 LKGLLECGRSLRMEGTFQGDLIST-GRVVVAPTGKIKGDLKGLKFLLVEGQVVGDVVCDEVMVVNEGKVFGDISSARVTVGPQSTMR 259
+KG LE R LR++G F+G+LI+ G +VV P G++ GDLK ++ + VEG V G+V ++V + N G + GD+ +T+ P +++R
Sbjct: 101 MKGELEFTRLLRVDGRFEGELITDKGSLVVGPKGEVVGDLKNMQEVYVEGIVRGNVFANDVKIKNAGMLLGDVQCMCLTLDPTASIR 187
BLAST of mRNA_E-siliculosus-1a_F_contig1015.154.1 vs. uniprot
Match: A0A6M1ZQA3_9BACT (Uncharacterized protein n=1 Tax=Chlamydiae bacterium TaxID=2081524 RepID=A0A6M1ZQA3_9BACT) HSP 1 Score: 66.2 bits (160), Expect = 2.710e-9 Identity = 37/90 (41.11%), Postives = 59/90 (65.56%), Query Frame = 2 Query: 8 GLLECGRSLRMEGTFQGDLISTGRVVVAPTGKIKGDLKGLKFLLVEGQVVGDVVCDE-VMVVNEGKVFGDISSARVTVGPQSTMRGRLTV 274
G L+ R LR++GTF+G+LIS G+V+V P GK+K +L LK +++G+V G++ C E V + +E V GDI + ++V T+ G + V
Sbjct: 78 GELKFDRLLRIDGTFEGELISEGKVIVGPKGKVKANLN-LKAAIIQGEVEGNITCKERVELRDEAVVTGDIQAKLLSVDEGVTIVGNVLV 166
BLAST of mRNA_E-siliculosus-1a_F_contig1015.154.1 vs. uniprot
Match: A0A7S3ZTD0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZTD0_9STRA) HSP 1 Score: 68.9 bits (167), Expect = 4.030e-9 Identity = 34/109 (31.19%), Postives = 64/109 (58.72%), Query Frame = 2 Query: 2 LKGLLECGRSLRMEGTFQGDLISTGRVVVAPTGKIKGDLKGLKFLLVEGQVVGDVVCDEVMVVNEGKVFGDISSARVTVGPQSTMRGRLTVVEDMDELAQLLLNEEGKE 328
++G L R LR++G F+GDL+STG ++V P G++ GD++ + L+V G+V+G++ D + + ++GD++ + + P + G L V + A L++ G E
Sbjct: 130 IEGTLRFERLLRLDGKFEGDLVSTGDLIVGPRGELVGDVRDMADLVVFGKVIGNINVDHLELCGAASIYGDVTCKTLLMDPTVVLVGTLNV----NPFAPNLMDRHGDE 234
BLAST of mRNA_E-siliculosus-1a_F_contig1015.154.1 vs. uniprot
Match: A0A6G0WCC1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WCC1_9STRA) HSP 1 Score: 66.2 bits (160), Expect = 4.600e-9 Identity = 33/92 (35.87%), Postives = 60/92 (65.22%), Query Frame = 2 Query: 2 LKGLLECGRSLRMEGTFQGDLISTGRVVVAPTGKIKGDLKGLKFLLVEG-QVVGDVVCDEVMVVNEGKVFGDISSARVTVGPQSTMRGRLTV 274
+KG L R LR+EG F+G LIS G +VV G + G++ G+K +LV G +V+G++ D +++ ++G++FG++++ V + P + G L +
Sbjct: 87 MKGELSFERLLRIEGEFEGKLISKGSLVVGHKGLLNGNIDGMKEVLVAGGRVLGNIQVDRLVLRDKGQIFGNVTAKSVRIDPDCILVGTLNI 178
BLAST of mRNA_E-siliculosus-1a_F_contig1015.154.1 vs. uniprot
Match: A0A5D6Y579_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y579_9STRA) HSP 1 Score: 65.5 bits (158), Expect = 1.110e-8 Identity = 37/109 (33.94%), Postives = 67/109 (61.47%), Query Frame = 2 Query: 2 LKGLLECGRSLRMEGTFQGDLISTGRVVVAPTGKIKGDLKGLKFLLVEG-QVVGDVVCDEVMVVNEGKVFGDISSARVTVGPQSTMRGRLTVVEDMDELAQLLLNEEGK 325
+KG L R LR+EG F+G L+S G +VV G + G ++ +K + V G ++VG++ +++++ ++ +VFG+I++ V + P + GRL V EL +NE+G+
Sbjct: 97 MKGELSFERLLRIEGEFEGKLVSKGSLVVGAKGVLTGPVENMKEVHVTGGKIVGNITVEKLVLRDKAQVFGNITAKTVKIDPDCVVVGRLNVNPQAPEL----INEKGE 201
BLAST of mRNA_E-siliculosus-1a_F_contig1015.154.1 vs. uniprot
Match: F0Y5F7_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y5F7_AURAN) HSP 1 Score: 67.0 bits (162), Expect = 2.230e-8 Identity = 30/91 (32.97%), Postives = 56/91 (61.54%), Query Frame = 2 Query: 2 LKGLLECGRSLRMEGTFQGDLISTGRVVVAPTGKIKGDLKGLKFLLVEGQVVGDVVCDEVMVVNEGKVFGDISSARVTVGPQSTMRGRLTV 274
++G L R LR++G F+G+LIS G ++V P G++ GD+K + ++V G+V+G++ D V + ++GDI+ + + P + G L +
Sbjct: 369 IEGKLRFERLLRLDGKFEGELISEGDLIVGPQGELVGDVKTMSDIVVFGKVIGNIAVDRVELCGSASIYGDITCKVLLMDPTVVLVGNLNI 459
BLAST of mRNA_E-siliculosus-1a_F_contig1015.154.1 vs. uniprot
Match: A0A328R9J1_9BACT (Cell shape determination protein CcmA n=1 Tax=Candidatus Marinamargulisbacteria bacterium SCGC AG-343-D04 TaxID=2184343 RepID=A0A328R9J1_9BACT) HSP 1 Score: 61.6 bits (148), Expect = 4.520e-8 Identity = 30/92 (32.61%), Postives = 56/92 (60.87%), Query Frame = 2 Query: 2 LKGLLECGRSLRMEGTFQGDLISTGRVVVAPTGKIKGDLKGLKFLLVEGQVVGDV-VCDEVMVVNEGKVFGDISSARVTVGPQSTMRGRLTV 274
+KG++ RS+R+EGTF+G++ S G V + K+K L G K + V G+V+G++ + ++ GKVFGDI+ ++ + +G++ +
Sbjct: 22 VKGMIHSQRSIRIEGTFEGEINSQGEVYIGQNSKVKASLFG-KHITVAGEVIGNIEAVKSLHILKTGKVFGDIAGDQLNIEEGGIYKGKVNM 112
BLAST of mRNA_E-siliculosus-1a_F_contig1015.154.1 vs. uniprot
Match: A0A6H5JN16_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN16_9PHAE) HSP 1 Score: 63.5 bits (153), Expect = 9.120e-8 Identity = 30/91 (32.97%), Postives = 59/91 (64.84%), Query Frame = 2 Query: 2 LKGLLECGRSLRMEGTFQGDLISTGRVVVAPTGKIKGDLKGLKFLLVEGQVVGDVVCDEVMVVNEGKVFGDISSARVTVGPQSTMRGRLTV 274
+KG L R LR++G+F+G L+STG +V+ TG ++G+++ L+ ++ +G VVG++ + V + V G+I+ +++ P ++ G+L V
Sbjct: 81 VKGELSFDRLLRVDGSFKGQLVSTGDLVIGATGIVRGNIEHLREVVSDGTVVGNIQAERVRLRRSAIVIGNITCYSLSMDPDVSISGKLNV 171 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1015.154.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1015.154.1 >prot_E-siliculosus-1a_F_contig1015.154.1 ID=prot_E-siliculosus-1a_F_contig1015.154.1|Name=mRNA_E-siliculosus-1a_F_contig1015.154.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=290bp MEGTFQGDLISTGRVVVAPTGKIKGDLKGLKFLLVEGQVVGDVVCDEVMVback to top mRNA from alignment at E-siliculosus-1a_F_contig1015:1522..4087+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1015.154.1 ID=mRNA_E-siliculosus-1a_F_contig1015.154.1|Name=mRNA_E-siliculosus-1a_F_contig1015.154.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2566bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1015:1522..4087+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1015:1522..4087+ >mRNA_E-siliculosus-1a_F_contig1015.154.1 ID=mRNA_E-siliculosus-1a_F_contig1015.154.1|Name=mRNA_E-siliculosus-1a_F_contig1015.154.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1740bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1015:1522..4087+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |