mRNA_E-siliculosus-1a_F_contig10143.153.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10143.153.1 vs. uniprot
Match: D8LEC0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEC0_ECTSI) HSP 1 Score: 234 bits (598), Expect = 1.410e-71 Identity = 147/178 (82.58%), Postives = 156/178 (87.64%), Query Frame = 1 Query: 142 FNVQTEASALQRLGMLSLNAALMKEEGKTEKAERDLVTCRAKYEECRSSLQLAREQMARDSAQGEAVEEAARTAATRGNETRPQAQQQQVPHGSHASTASDAELDEEGFGLKHMKEAMLRSLEEESKQDGGRDPQHGKVSSAPWAKATAAPGKRXXXXXXXXXXXTASTNRWAVFAED 675
FNVQT+ LQRLGM SLNAALMKEEGKTEKAERD+ TCRAKYEECRSSLQ AREQMARDSAQ EAV+EAAR AAT+G ET PQAQ+QQV GSHASTASDA+LDEEGFGL+HM++AMLRSLEEE KQDG DPQ GKVSSAP AKA AAP RXXXXXXXXX TASTNRWAVFAED
Sbjct: 191 FNVQTQ---LQRLGMRSLNAALMKEEGKTEKAERDMATCRAKYEECRSSLQSAREQMARDSAQAEAVKEAARKAATQGKETGPQAQKQQVAQGSHASTASDAKLDEEGFGLQHMEQAMLRSLEEEVKQDGVCDPQQGKVSSAPRAKAIAAPA-RXXXXXXXXXLPTASTNRWAVFAED 364
BLAST of mRNA_E-siliculosus-1a_F_contig10143.153.1 vs. uniprot
Match: A0A6H5K864_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K864_9PHAE) HSP 1 Score: 107 bits (267), Expect = 8.070e-26 Identity = 59/75 (78.67%), Postives = 67/75 (89.33%), Query Frame = 1 Query: 337 AVEEAARTAATRGNETRPQAQQQQVPHGSHASTASDAELDEEGFGLKHMKEAMLRSLEEESKQDGGRDPQHGKVS 561
AVEEAAR AT+G ET PQAQQQQ+P GSHASTASDA+L +EGFGL+HM+EAMLRS+EE SKQDGGR+PQ GKVS
Sbjct: 36 AVEEAARKGATQGKETGPQAQQQQLPQGSHASTASDAKLGKEGFGLRHMEEAMLRSMEE-SKQDGGRNPQQGKVS 109
BLAST of mRNA_E-siliculosus-1a_F_contig10143.153.1 vs. uniprot
Match: A0A6H5KTB2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTB2_9PHAE) HSP 1 Score: 89.4 bits (220), Expect = 5.410e-18 Identity = 63/147 (42.86%), Postives = 77/147 (52.38%), Query Frame = 1 Query: 4 RLQTARSACYEYHLEGIQNRQDAYRASIALAQAEHDLQKMTQVVAR-------------------------------------------------FNVQTEASALQRLGMLSLNAALMKEEGKTEKAERDLVTCRAKYEECRSSLQL 297
RLQTARSACYE+ L ++NR D+++A LA+ + DL T++ R FNVQT+ASA QRL ML LNAAL+KEEGKTEKAERDL TCRAKYE R++L L
Sbjct: 19 RLQTARSACYEFQLAVVENRADSHKAGADLARVKTDLPTKTKLFRRTEAEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFNVQTQASAPQRLRMLCLNAALVKEEGKTEKAERDLATCRAKYE--RATLTL 163
BLAST of mRNA_E-siliculosus-1a_F_contig10143.153.1 vs. uniprot
Match: D8LEC9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEC9_ECTSI) HSP 1 Score: 54.3 bits (129), Expect = 1.500e-5 Identity = 27/35 (77.14%), Postives = 31/35 (88.57%), Query Frame = 1 Query: 169 LQRLGMLSLNAALMKEEGKTEKAERDLVTCRAKYE 273
LQRLGML LN A++KEE KT+KAERDL TCRAKY+
Sbjct: 112 LQRLGMLFLNGAIIKEEEKTKKAERDLATCRAKYD 146 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10143.153.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 4 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10143.153.1 >prot_E-siliculosus-1a_F_contig10143.153.1 ID=prot_E-siliculosus-1a_F_contig10143.153.1|Name=mRNA_E-siliculosus-1a_F_contig10143.153.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=277bp ARLQTARSACYEYHLEGIQNRQDAYRASIALAQAEHDLQKMTQVVARFNVback to top mRNA from alignment at E-siliculosus-1a_F_contig10143:609..2591- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig10143.153.1 ID=mRNA_E-siliculosus-1a_F_contig10143.153.1|Name=mRNA_E-siliculosus-1a_F_contig10143.153.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1983bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10143:609..2591- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10143:609..2591- >mRNA_E-siliculosus-1a_F_contig10143.153.1 ID=mRNA_E-siliculosus-1a_F_contig10143.153.1|Name=mRNA_E-siliculosus-1a_F_contig10143.153.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1662bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10143:609..2591- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |