mRNA_E-siliculosus-1a_F_contig10142.152.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10142.152.1 vs. uniprot
Match: A0A6H5JQD2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQD2_9PHAE) HSP 1 Score: 197 bits (501), Expect = 1.870e-56 Identity = 108/239 (45.19%), Postives = 136/239 (56.90%), Query Frame = 3 Query: 9 REWVKKTVQASPACRELLWTISEREVGTRRHGTGRPRGIVEWNVRLGQQ-----AAAPRAQGWQETIGALLRRTGPGGLDLLDLYKAWFSCGRETSNPNMCGNGRCPRCWCNRHLHLVNMEVECSNTWIGAPERVSGGTGTIRGAPMEDAHDKPKFRWILAPPPCGTDVEIYSNRAALDAKKPGPAGTCTLGKVAFFSQHRGNSLQ-DGGEGLLTRWAAVAEYVTAGVGSSEKSDAVTG 707 R W+ + ++ASPACR+L+ T+ + +R+HG R R VEW + + + AA W E I + G D LY+ W+SCGR C RC RCW R + E C N W GAP R SGGTGT+RG P+E A + RW+ AP PCGTDVEI+ AL A++PGPAGTCTLGKVA+F +H GN Q + G T W AVAEYV+A VG S DA TG Sbjct: 124 RTWLTERIKASPACRKLMRTLLDSSKVSRKHGVSRVRRTVEWKMDITNKGKSITAAPDNDIRWIEAIAKASK-----GFDPDALYRRWYSCGRPHGEEARCSGLRCIRCWKFRVNGFRHTEARCFNNWTGAPARASGGTGTVRGCPVEMAEPNNR-RWMFAPYPCGTDVEIFFTPDALAAQRPGPAGTCTLGKVAYFIEHVGNPPQGEDTRGEPTVWVAVAEYVSAAVGQSTMRDAATG 356
BLAST of mRNA_E-siliculosus-1a_F_contig10142.152.1 vs. uniprot
Match: A0A6H5K7J0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7J0_9PHAE) HSP 1 Score: 189 bits (479), Expect = 1.710e-54 Identity = 100/140 (71.43%), Postives = 104/140 (74.29%), Query Frame = 3 Query: 3 TKREWVKKTVQASPACRELLWTISEREVGTRR----HGTGRPRGIVEWN-VRLGQQAAAPRAQGWQETIGALLRRTGPGGLDLLDLYKAWFSCGRETSNPNMCGNGRCPRCWCNRHLHLVNMEVECSNTWIGAPERVSGG 407 T REWVKKTVQASP+CRELL ISE E+GTR HG V N +RL RAQ WQE IGALLRRTG GGL+LLDLYKAWFSCGRE SNPNM NGRCPRCW NRH H VNME ECSNTWIGAPERVSGG Sbjct: 145 TMREWVKKTVQASPSCRELLRAISEWEIGTRTAPGDHGESLSGTPVSGNRLRL-------RAQRWQEKIGALLRRTGQGGLNLLDLYKAWFSCGREKSNPNMSENGRCPRCWRNRHPHTVNMEGECSNTWIGAPERVSGG 277
BLAST of mRNA_E-siliculosus-1a_F_contig10142.152.1 vs. uniprot
Match: A0A6H5KYQ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYQ6_9PHAE) HSP 1 Score: 197 bits (501), Expect = 3.310e-53 Identity = 108/239 (45.19%), Postives = 136/239 (56.90%), Query Frame = 3 Query: 9 REWVKKTVQASPACRELLWTISEREVGTRRHGTGRPRGIVEWNVRLGQQ-----AAAPRAQGWQETIGALLRRTGPGGLDLLDLYKAWFSCGRETSNPNMCGNGRCPRCWCNRHLHLVNMEVECSNTWIGAPERVSGGTGTIRGAPMEDAHDKPKFRWILAPPPCGTDVEIYSNRAALDAKKPGPAGTCTLGKVAFFSQHRGNSLQ-DGGEGLLTRWAAVAEYVTAGVGSSEKSDAVTG 707 R W+ + ++ASPACR+L+ T+ + +R+HG R R VEW + + + AA W E I + G D LY+ W+SCGR C RC RCW R + E C N W GAP R SGGTGT+RG P+E A + RW+ AP PCGTDVEI+ AL A++PGPAGTCTLGKVA+F +H GN Q + G T W AVAEYV+A VG S DA TG Sbjct: 745 RTWLTERIKASPACRKLMRTLLDSSKVSRKHGVSRVRRTVEWKMDITNKGKSITAAPDNDIRWIEAIAKASK-----GFDPDALYRRWYSCGRPHGEEARCSGLRCIRCWKFRVNGFRHTEARCFNNWTGAPARASGGTGTVRGCPVEMAEPNNR-RWMFAPYPCGTDVEIFFTPDALAAQRPGPAGTCTLGKVAYFIEHVGNPPQGEDTRGEPTVWVAVAEYVSAAVGQSTMRDAATG 977
BLAST of mRNA_E-siliculosus-1a_F_contig10142.152.1 vs. uniprot
Match: A0A6H5JF97_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF97_9PHAE) HSP 1 Score: 195 bits (496), Expect = 1.140e-52 Identity = 105/237 (44.30%), Postives = 138/237 (58.23%), Query Frame = 3 Query: 15 WVKKTVQASPACRELLWTISEREVGTRRHGTGRPRGIVEWNVRLGQ-----QAAAPRAQGWQETIGALLRRTGPGGLDLLDLYKAWFSCGRETSNPNMCGNGRCPRCWCNRHLHLVNMEVECSNTWIGAPERVSGGTGTIRGAPMEDAHDKPKFRWILAPPPCGTDVEIYSNRAALDAKKPGPAGTCTLGKVAFFSQHRGNS-LQDGGEGLLTRWAAVAEYVTAGVGSSEKSDAVTG 707 WV TVQAS CR+LL T+S+ +R+HG GR RG V W + + Q +A + + W + +++T L DLY W+SCGR CG +CPRCW R++ V SN W GAP VSGG+GT+RG ++ A + +W+ GTDVEIYSNR A+ + KPGPAGTC+L +VAFF++H GN L G T W AVAEYVTAG+G + DA TG Sbjct: 564 WVVSTVQASSPCRKLLKTLSDTLSHSRKHGVGRARGTVNWEMSIAQHGGELEATSGSERSWMRALAMAMQQT----FRLEDLYHTWYSCGRLHGVQAFCGKPQCPRCWKYRNVGFREQRVRFSNNWTGAPSEVSGGSGTLRGGNVQIAKTNDR-QWMAE---SGTDVEIYSNRDAMISNKPGPAGTCSLARVAFFAEHVGNPPLGVDTTGEKTLWVAVAEYVTAGIGQDKFVDAATG 792
BLAST of mRNA_E-siliculosus-1a_F_contig10142.152.1 vs. uniprot
Match: D7FWW6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWW6_ECTSI) HSP 1 Score: 187 bits (476), Expect = 5.890e-50 Identity = 90/97 (92.78%), Postives = 92/97 (94.85%), Query Frame = 3 Query: 3 TKREWVKKTVQASPACRELLWTISEREVGTRRHGTGRPRGIVEWNVRLGQQAAAPRAQGWQETIGALLRRTGPGGLDLLDLYKAWFSCGRETSNPNM 293 TKR WVKKTVQASPACRELL TISE E+G RRHGTGRPRGIVEWNVRLG+QAAAP AQGWQETIGALLRRTGPGGLDLLDLYKAWFSCGRETSNPNM Sbjct: 823 TKRGWVKKTVQASPACRELLRTISEWEIGARRHGTGRPRGIVEWNVRLGRQAAAPSAQGWQETIGALLRRTGPGGLDLLDLYKAWFSCGRETSNPNM 919 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10142.152.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 5 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10142.152.1 >prot_E-siliculosus-1a_F_contig10142.152.1 ID=prot_E-siliculosus-1a_F_contig10142.152.1|Name=mRNA_E-siliculosus-1a_F_contig10142.152.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=142bp MCGNGRCPRCWCNRHLHLVNMEVECSNTWIGAPERVSGGTGTIRGAPMEDback to top mRNA from alignment at E-siliculosus-1a_F_contig10142:590..1538+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig10142.152.1 ID=mRNA_E-siliculosus-1a_F_contig10142.152.1|Name=mRNA_E-siliculosus-1a_F_contig10142.152.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=949bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10142:590..1538+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10142:590..1538+ >mRNA_E-siliculosus-1a_F_contig10142.152.1 ID=mRNA_E-siliculosus-1a_F_contig10142.152.1|Name=mRNA_E-siliculosus-1a_F_contig10142.152.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=852bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10142:590..1538+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |