mRNA_E-siliculosus-1a_F_contig1014.149.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1014.149.1 vs. uniprot
Match: D7FLL6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLL6_ECTSI) HSP 1 Score: 488 bits (1257), Expect = 2.680e-170 Identity = 261/261 (100.00%), Postives = 261/261 (100.00%), Query Frame = 2 Query: 62 MSAQQVAPTRMALQMYKGKLLGAKKGYELLKKKSDALKARFRKIAKQIHELKQVMREDAATAFFSLTQAAQYVAGDFRGKVLDTPRPAAVRCRARTDNVAGVKLPVFESYETGSEAKDNIGLAGGGQKVGQCRDKYKAWVENLIKLASLQTSFVTMDEALKVTNRRVNALENVTIPRMEGVISYINRELDELEREDFTRLKKVVEKKREAAAREQALKNELAAANKLLETDEALAASAAVSGGDDTMLDEFDTQEQGDVYF 844 MSAQQVAPTRMALQMYKGKLLGAKKGYELLKKKSDALKARFRKIAKQIHELKQVMREDAATAFFSLTQAAQYVAGDFRGKVLDTPRPAAVRCRARTDNVAGVKLPVFESYETGSEAKDNIGLAGGGQKVGQCRDKYKAWVENLIKLASLQTSFVTMDEALKVTNRRVNALENVTIPRMEGVISYINRELDELEREDFTRLKKVVEKKREAAAREQALKNELAAANKLLETDEALAASAAVSGGDDTMLDEFDTQEQGDVYF Sbjct: 1 MSAQQVAPTRMALQMYKGKLLGAKKGYELLKKKSDALKARFRKIAKQIHELKQVMREDAATAFFSLTQAAQYVAGDFRGKVLDTPRPAAVRCRARTDNVAGVKLPVFESYETGSEAKDNIGLAGGGQKVGQCRDKYKAWVENLIKLASLQTSFVTMDEALKVTNRRVNALENVTIPRMEGVISYINRELDELEREDFTRLKKVVEKKREAAAREQALKNELAAANKLLETDEALAASAAVSGGDDTMLDEFDTQEQGDVYF 261
BLAST of mRNA_E-siliculosus-1a_F_contig1014.149.1 vs. uniprot
Match: A0A836CEZ0_9STRA (ATP synthase subunit D-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEZ0_9STRA) HSP 1 Score: 330 bits (845), Expect = 4.510e-108 Identity = 176/206 (85.44%), Postives = 188/206 (91.26%), Query Frame = 2 Query: 62 MSAQQVAPTRMALQMYKGKLLGAKKGYELLKKKSDALKARFRKIAKQIHELKQVMREDAATAFFSLTQAAQYVAGDFRGKVLDTPRPAAVRCRARTDNVAGVKLPVFESYETGSEAKDNIGLAGGGQKVGQCRDKYKAWVENLIKLASLQTSFVTMDEALKVTNRRVNALENVTIPRMEGVISYINRELDELEREDFTRLKKVVEK 679 MSAQ VAPTRMAL +YKGKL+GAKKGYELLKKKSDALKARFR IAKQI+ELK+ MREDA+ AFFSLTQA QY AGDFR KVLDTP PAA+R R+RTDNVAGVKLP+F Y TG E DNIGL+GGGQKV QCR+KYK WVENL+KLASLQTSF+TMDEALKVTNRRVNALENVTIPRMEGVISYINRELDELEREDFTRLKKVVEK Sbjct: 1 MSAQ-VAPTRMALTLYKGKLVGAKKGYELLKKKSDALKARFRAIAKQIYELKKQMREDASMAFFSLTQA-QYAAGDFRSKVLDTPHPAAIRVRSRTDNVAGVKLPMFTPYGTGVEVHDNIGLSGGGQKVAQCREKYKQWVENLVKLASLQTSFITMDEALKVTNRRVNALENVTIPRMEGVISYINRELDELEREDFTRLKKVVEK 204
BLAST of mRNA_E-siliculosus-1a_F_contig1014.149.1 vs. uniprot
Match: A0A7S2V1A2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1A2_9STRA) HSP 1 Score: 259 bits (663), Expect = 8.850e-81 Identity = 148/265 (55.85%), Postives = 187/265 (70.57%), Query Frame = 2 Query: 62 MSAQQVAPTRMALQMYKGKLLGAKKGYELLKKKSDALKARFRKIAKQIHELKQVMREDAATAFFSLTQAAQYVAGDFRGKVLD-TPRPAAVRCRARTDNVAGVKLPVFESYETGSEAKDNIGLAGGGQKVGQCRDKYKAWVENLIKLASLQTSFVTMDEALKVTNRRVNALENVTIPRMEGVISYINRELDELEREDFTRLKKVVEKKREAAA---REQALKNELAAANKLLETDEALAASAAVSGGDDTMLDEFDTQEQGDVYF 844 MS VAPTRMAL M+KGK +GAKKG+ELLKKKSDALKAR R+I K+I+ K+ + + A TAFFSLTQA QY AGDFR +V+D A++R R DNVAGVKLP+F YE +E K+N+GLAGGG+ + CR K+KA++ +L++L+SLQTS++TMDEALKVTNRR NALENVTIPR+EG++SYI RELDELEREDF+RLK+V KK+E A + +L E+A ML +D + DVYF Sbjct: 1 MSGANVAPTRMALTMFKGKRVGAKKGFELLKKKSDALKARHREIMKEIYRHKKNIADQAQTAFFSLTQA-QYAAGDFRTQVIDGCGNSASMRVHNRIDNVAGVKLPIFMEYEASTEQKENLGLAGGGRAIANCRAKFKAFLVSLVQLSSLQTSYITMDEALKVTNRRCNALENVTIPRIEGILSYIERELDELEREDFSRLKRVTSKKKEDAEDQPEQDSLDKEMA------------------------MLSNYDVADDNDVYF 240
BLAST of mRNA_E-siliculosus-1a_F_contig1014.149.1 vs. uniprot
Match: W7TG62_9STRA (H-or na-translocating f-v-type and a-type atpase (F-atpase) superfamily n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TG62_9STRA) HSP 1 Score: 256 bits (655), Expect = 2.790e-79 Identity = 153/275 (55.64%), Postives = 186/275 (67.64%), Query Frame = 2 Query: 62 MSAQQVAPTRMALQMYKGKLLGAKKGYELLKKKSDALKARFRKIAKQIHELKQVMREDAATAFFSLTQAAQYVAGDFRGKVLDTPRPAAVRCRARTDNVAGVKLPVFESYETGSEAK-----DNIGLAGGGQKVGQCRDKYKAWVENLIKLASLQTSFVTMDEALKVTNRRVNALENVTIPRMEGVISYINRELDELEREDFTRLKKVVEKKREAAAREQALKNELAAANKLLETDEALAASAAVSGGDDTMLD---------EFDTQEQGDVYF 844 MS VAPTRMAL MYK K +GAKKGYELLKKKSDALK RFR I K I K M + ++AFFSLTQA QY AGDFR +VL A+VR TDNVAGVKLPVF YE SE K DN+GLA GG+++ C++K+ ++ NL++LASLQTSF+T+DEALKVTNRRVNALENVTIPR+E +++YINRELDELEREDFTRLKKV KR A A +A +EAL +AA +G + ++ ++DT D+ F Sbjct: 1 MSGAIVAPTRMALTMYKTKRVGAKKGYELLKKKSDALKVRFRDIMKDIARTKGNMADQGSSAFFSLTQA-QYAAGDFRQQVLQGSLTASVRVHTHTDNVAGVKLPVFRQYELQSEVKSKSDRDNLGLAQGGRQIKACKEKFTVFLTNLVRLASLQTSFITLDEALKVTNRRVNALENVTIPRIEAILAYINRELDELEREDFTRLKKVQGSKRTAQAAAEA-------------AEEALHKAAAAAGARSSKIEGGLVKDVTAQYDTAGDSDIVF 261
BLAST of mRNA_E-siliculosus-1a_F_contig1014.149.1 vs. uniprot
Match: F0YKB3_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YKB3_AURAN) HSP 1 Score: 256 bits (653), Expect = 2.980e-79 Identity = 139/211 (65.88%), Postives = 171/211 (81.04%), Query Frame = 2 Query: 68 AQQVAPTRMALQMYKGKLLGAKKGYELLKKKSDALKARFRKIAKQIHELKQVMREDAATAFFSLTQAAQYVAGDFRGKVLDTPRPAAVRCRARTDNVAGVKLPVFESYETGSEAKDNIGLAGGGQKVGQCRDKYKAWVENLIKLASLQTSFVTMDEALKVTNRRVNALENVTIPRMEGVISYINRELDELEREDFTRLKKVVEK--KREAA 694 A QV PTRMALQ YKGK GA KG++LLKKK+DALKARFR IAK+I++ K M E +TA+FSLT AAQY AGDF+ KVL+ A+VR +TDN+AGVK+PVF ++TG+E +NIGLAGGG+K+ +C++K+ + L+KLASLQTSFVTMDEALKVTNRRVNALENVT+PR+E +SYI ELDELEREDFTRLKKV ++ KR+AA Sbjct: 2 ADQVPPTRMALQTYKGKKAGASKGHQLLKKKADALKARFRDIAKEIYKTKGTMSESCSTAYFSLT-AAQYAAGDFKTKVLEGNFVASVRVTGQTDNIAGVKIPVFRQFDTGAEHLENIGLAGGGRKIAECKEKFTNLLAVLVKLASLQTSFVTMDEALKVTNRRVNALENVTLPRIEKTLSYITSELDELEREDFTRLKKVKDQNSKRQAA 211
BLAST of mRNA_E-siliculosus-1a_F_contig1014.149.1 vs. uniprot
Match: M4BRW9_HYAAE (Uncharacterized protein n=2 Tax=Peronosporaceae TaxID=4777 RepID=M4BRW9_HYAAE) HSP 1 Score: 255 bits (651), Expect = 9.110e-79 Identity = 149/261 (57.09%), Postives = 181/261 (69.35%), Query Frame = 2 Query: 62 MSAQQVAPTRMALQMYKGKLLGAKKGYELLKKKSDALKARFRKIAKQIHELKQVMREDAATAFFSLTQAAQYVAGDFRGKVLDTPRPAAVRCRARTDNVAGVKLPVFESYETGSEAKDNIGLAGGGQKVGQCRDKYKAWVENLIKLASLQTSFVTMDEALKVTNRRVNALENVTIPRMEGVISYINRELDELEREDFTRLKKVVEKKREAAAREQALKNELAAANKLLETDEALAASAAVSGGDDTMLDEFDTQEQGDVYF 844 MS+ QVAPTRMAL +K K + AKKG+ELLKKK+DALK RF+ + ++I + K M +A+ AFFSLTQA QY AGDFR KV+++ A +R + R DNVAGVKLPVF E E DNIGLAGGG K+ CR K++ + LIKLASLQTSFVT+DEALKVTNRRVNAL+NVTIPR+E ISYI+RELDELEREDF R+KKV K+ QA K E+AA N L E A V D +L +++ DV F Sbjct: 1 MSSVQVAPTRMALTTFKTKSVSAKKGFELLKKKADALKMRFQAMLREIQKTKMSMSTEASEAFFSLTQA-QYAAGDFRNKVIESVTTAEIRTQNRIDNVAGVKLPVFTEVEVSREKSDNIGLAGGGGKIQNCRAKFRVLLRALIKLASLQTSFVTLDEALKVTNRRVNALDNVTIPRIENTISYISRELDELEREDFVRIKKVQANKQVIEKAVQAKKKEVAAKNALAEDP-----IADVVASDHDILSQYELSADADVVF 255
BLAST of mRNA_E-siliculosus-1a_F_contig1014.149.1 vs. uniprot
Match: A0A7S1XVP0_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XVP0_9STRA) HSP 1 Score: 255 bits (651), Expect = 4.400e-78 Identity = 142/206 (68.93%), Postives = 165/206 (80.10%), Query Frame = 2 Query: 59 TMSAQQVAPTRMALQMYKGKLLGAKKGYELLKKKSDALKARFRKIAKQIHELKQVMREDAATAFFSLTQAAQYVAGDFRGKVLDTPRPAAVRCRARTDNVAGVKLPVFESYET--GSEAKDNIGLAGGGQKVGQCRDKYKAWVENLIKLASLQTSFVTMDEALKVTNRRVNALENVTIPRMEGVISYINRELDELEREDFTRLKKV 670 TM QQVAPTRMALQ+YKGK A KGY+LLKKKSDALK RFR AK+I K M ED+A AFFSLTQA QY AGDF+ VL+ A+VR RTDNVAGVKLPVF SYET G+ A +NIGLAGGG++V Q RDK+K ++ ++ LASLQTSF+T+DEALK+TNRRVNALENVTIPR+E + YINRELDELERE+FTRLKK+ Sbjct: 56 TMGDQQVAPTRMALQLYKGKREAATKGYKLLKKKSDALKVRFRDYAKKIAANKGSMAEDSAGAFFSLTQA-QYAAGDFKLAVLEGNCTASVRIHTRTDNVAGVKLPVFSSYETADGTNASENIGLAGGGRQVQQSRDKFKEFMGKMVTLASLQTSFLTLDEALKITNRRVNALENVTIPRIEATLKYINRELDELEREEFTRLKKL 260
BLAST of mRNA_E-siliculosus-1a_F_contig1014.149.1 vs. uniprot
Match: D0N597_PHYIT (H-or Na-translocating F-type, V-type and A-type ATPase (F-ATPase) Superfamily n=15 Tax=Phytophthora TaxID=4783 RepID=D0N597_PHYIT) HSP 1 Score: 248 bits (633), Expect = 5.300e-76 Identity = 145/265 (54.72%), Postives = 183/265 (69.06%), Query Frame = 2 Query: 62 MSAQQVAPTRMALQMYKGKLLGAKKGYELLKKKSDALKARFRKIAKQIHELKQVMREDAATAFFSLTQAAQYVAGDFRGKVLDTPRPAAVRCRARTDNVAGVKLPVFESYETGSEAKDNIGLAGGGQKVGQCRDKYKAWVENLIKLASLQTSFVTMDEALKVTNRRVNALENVTIPRMEGVISYINRELDELEREDFTRLKKVVEKKRE----AAAREQALKNELAAANKLLETDEALAASAAVSGGDDTMLDEFDTQEQGDVYF 844 MS+ QVAPTRMAL +KGK +GAKKG+ELLKKK+DALK RF+ + ++I + K M +A+ AFFSLTQA QY AGDFR KV+++ A +R + R DNVAGVKLPVF E E +NIGLAGGG K+ CR+K++ + LIKLASLQTSFVT+DEALKVTNRRVNAL+NVTIPR+E ISYI RELDELEREDF R+KKV K++ ARE+ ++ ++ D A V D +L +++ DV F Sbjct: 1 MSSVQVAPTRMALTTFKGKRVGAKKGFELLKKKADALKMRFQAMLREIQKTKMSMSTEASEAFFSLTQA-QYAAGDFRNKVIESVSTAEIRTQNRIDNVAGVKLPVFTEVEVSREKSENIGLAGGGGKIQNCREKFRVLLRALIKLASLQTSFVTLDEALKVTNRRVNALDNVTIPRIEKTISYITRELDELEREDFVRIKKVQANKQDHEKAVLAREKEAAESKKSSGAAVDDDP----FADVVASDRDILAQYEPSADADVVF 260
BLAST of mRNA_E-siliculosus-1a_F_contig1014.149.1 vs. uniprot
Match: A0A1V9Z1C8_9STRA (H-or Na-translocating F-type, V-type and A-type ATPase (F-ATPase) Superfamily n=2 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9Z1C8_9STRA) HSP 1 Score: 248 bits (632), Expect = 5.770e-76 Identity = 136/215 (63.26%), Postives = 165/215 (76.74%), Query Frame = 2 Query: 62 MSAQQVAPTRMALQMYKGKLLGAKKGYELLKKKSDALKARFRKIAKQIHELKQVMREDAATAFFSLTQAAQYVAGDFRGKVLDTPRPAAVRCRARTDNVAGVKLPVFESYETGSEAKDNIGLAGGGQKVGQCRDKYKAWVENLIKLASLQTSFVTMDEALKVTNRRVNALENVTIPRMEGVISYINRELDELEREDFTRLKKVVEKKREAAAREQ 706 MS QV PTRM L +YK K + AKKGY+LLKKK+DALK RF+ + ++I + K M +DAA AFFSLTQA QY AGDFR KV+++ A R R DNVAGVKLPVF ET E +NIGL+GGG K+ CRDK+++ ++ L+KLASLQTSFVT+DEALKVTNRRVNAL+NVTIPR++ VI YI+RELDELEREDF R+KKV K EAA +Q Sbjct: 1 MSTVQVPPTRMNLTVYKAKRVAAKKGYDLLKKKADALKMRFQAMLREIQKTKMAMSQDAADAFFSLTQA-QYAAGDFRHKVVESVTTAEFRLENRIDNVAGVKLPVFTDVETTREKSENIGLSGGGGKIQNCRDKFRSLLKALVKLASLQTSFVTLDEALKVTNRRVNALDNVTIPRIDKVIDYISRELDELEREDFVRIKKVQANKIEAAKEQQ 214
BLAST of mRNA_E-siliculosus-1a_F_contig1014.149.1 vs. uniprot
Match: A0A1V9ZXX8_9STRA (H-or Na-translocating F-type, V-type and A-type ATPase (F-ATPase) Superfamily n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZXX8_9STRA) HSP 1 Score: 246 bits (627), Expect = 3.020e-75 Identity = 148/261 (56.70%), Postives = 182/261 (69.73%), Query Frame = 2 Query: 62 MSAQQVAPTRMALQMYKGKLLGAKKGYELLKKKSDALKARFRKIAKQIHELKQVMREDAATAFFSLTQAAQYVAGDFRGKVLDTPRPAAVRCRARTDNVAGVKLPVFESYETGSEAKDNIGLAGGGQKVGQCRDKYKAWVENLIKLASLQTSFVTMDEALKVTNRRVNALENVTIPRMEGVISYINRELDELEREDFTRLKKVVEKKREAAAREQALKNELAAANKLLETDEALAASAAVSGGDDTMLDEFDTQEQGDVYF 844 MS QV PTRM L +YK K + AKKG++LLKKK+DALK RF+ + ++I + K M ++AA AFFSL+QA QY AGDFR KV+++ A R R DNVAGVKLPVF ET E +NIGLAGGG K+ CRDK++A ++ L+KLASLQTSFVT+DEALKVTNRRVNAL+NVTIPR++ +I YI+RELDELEREDF R+KKV K E A REQ L AA L E A+A + D +L F+ DV F Sbjct: 1 MSTVQVPPTRMNLTVYKAKRVAAKKGFDLLKKKADALKMRFQNMLREIQKTKLAMSQEAADAFFSLSQA-QYAAGDFRHKVIESVTSAEFRLENRIDNVAGVKLPVFTDIETTREKSENIGLAGGGGKIQSCRDKFRALLKALVKLASLQTSFVTLDEALKVTNRRVNALDNVTIPRIDKIIDYISRELDELEREDFVRIKKVQANKIELA-REQQL-----AAEALNEQG----AAAQIQASDLDILAAFEPTADDDVVF 250 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1014.149.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1014.149.1 >prot_E-siliculosus-1a_F_contig1014.149.1 ID=prot_E-siliculosus-1a_F_contig1014.149.1|Name=mRNA_E-siliculosus-1a_F_contig1014.149.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=262bp MSAQQVAPTRMALQMYKGKLLGAKKGYELLKKKSDALKARFRKIAKQIHEback to top mRNA from alignment at E-siliculosus-1a_F_contig1014:16618..20935- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1014.149.1 ID=mRNA_E-siliculosus-1a_F_contig1014.149.1|Name=mRNA_E-siliculosus-1a_F_contig1014.149.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4318bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1014:16618..20935- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1014:16618..20935- >mRNA_E-siliculosus-1a_F_contig1014.149.1 ID=mRNA_E-siliculosus-1a_F_contig1014.149.1|Name=mRNA_E-siliculosus-1a_F_contig1014.149.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1572bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1014:16618..20935- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |