mRNA_E-siliculosus-1a_F_contig10134.143.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10134.143.1 vs. uniprot
Match: E6ZEQ8_ECTSI (Sec-independent transporter protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=E6ZEQ8_ECTSI) HSP 1 Score: 446 bits (1148), Expect = 2.780e-157 Identity = 222/254 (87.40%), Postives = 241/254 (94.88%), Query Frame = 1 Query: 1 MKRLKLSIYYIQELNYRLAYATLGTTLIFFTTYIYKQGLIFLLLPRGLSHFVSSGLTEIFFTYIQLCIILSLSFGIFLVVSQSYIFLRPGMYTYESNTFLRLLISAFCFYVCIYVLIFPTLIKIIWELFLTYSQNFTPINLTFEPRLNNYLDHVQQLNKILIFSFPCLLTLNLFQKYTNKQLWVKHRGIAYIVAFFIAAFITPPDIISQIFVGAPLIFFFEAQIVTWTFYKKYQQQFLVRQPIKPHKNTLRNKK 762 MKRL+LSIYYIQELNYRLAYA LGTTLIFFTTY YKQGLIFLLLP+GLSHFVS+GLTEIFFTYIQLCIILS+SFGIFL+ SQSY+FLRPGMYTYES+TFL+L+ISAFCFY IY+L+FP LIK+ WELFLTYSQNFTPINLTFEPRLNNYLDH+QQLNKILIFSFPCLLTLNLFQKYTNKQLWVKHRGIAYI+AFFIAAFITPPDIISQI VGAPLIFFFE QI+ W FYK+Y++Q LVRQPIK HKNTLRNK+ Sbjct: 1 MKRLQLSIYYIQELNYRLAYAALGTTLIFFTTYTYKQGLIFLLLPKGLSHFVSAGLTEIFFTYIQLCIILSISFGIFLIASQSYVFLRPGMYTYESSTFLKLIISAFCFYTYIYILVFPALIKVSWELFLTYSQNFTPINLTFEPRLNNYLDHIQQLNKILIFSFPCLLTLNLFQKYTNKQLWVKHRGIAYIIAFFIAAFITPPDIISQILVGAPLIFFFEIQIILWAFYKEYKKQLLVRQPIKSHKNTLRNKE 254
BLAST of mRNA_E-siliculosus-1a_F_contig10134.143.1 vs. uniprot
Match: A0A8F0JZS6_9PHAE (SecY-independent transporter protein n=1 Tax=Cymathaere triplicata TaxID=309354 RepID=A0A8F0JZS6_9PHAE) HSP 1 Score: 342 bits (876), Expect = 7.060e-116 Identity = 163/254 (64.17%), Postives = 206/254 (81.10%), Query Frame = 1 Query: 1 MKRLKLSIYYIQELNYRLAYATLGTTLIFFTTYIYKQGLIFLLLPRGLSHFVSSGLTEIFFTYIQLCIILSLSFGIFLVVSQSYIFLRPGMYTYESNTFLRLLISAFCFYVCIYVLIFPTLIKIIWELFLTYSQNFTPINLTFEPRLNNYLDHVQQLNKILIFSFPCLLTLNLFQKYTNKQLWVKHRGIAYIVAFFIAAFITPPDIISQIFVGAPLIFFFEAQIVTWTFYKKYQQQFLVRQPIKPHKNTLRNKK 762 M RLK SIYY+QELNYRLAYA LGT +F TTY YKQGLIF+ LP+GLSHFVS+GLTEIFFTY+QLC I S SFG+ + ++Q Y+FLRPG+Y +E+ T LL +A FY+CIY ++FP ++KI+WELF YSQNFT I+LTFEPRL +YL H+QQLN L SFPCL+ LN+ Q YTN++ W+K+RGIAYI AFFIAAFITPPD++SQ +G PLI F+E QI W+ Y++Y++Q LVRQPIKP++N+ R+KK Sbjct: 1 MNRLKTSIYYLQELNYRLAYAILGTVFLFSTTYTYKQGLIFIFLPKGLSHFVSTGLTEIFFTYLQLCTIFSFSFGLGIALTQLYLFLRPGLYAFEAKTTFHLLTTALIFYICIYTIVFPIIVKILWELFSAYSQNFTAIDLTFEPRLQDYLSHLQQLNTALTLSFPCLILLNIIQMYTNRETWIKYRGIAYITAFFIAAFITPPDVLSQTLIGLPLIIFYEIQIKFWSLYEEYKKQLLVRQPIKPYENSYRDKK 254
BLAST of mRNA_E-siliculosus-1a_F_contig10134.143.1 vs. uniprot
Match: W5RG32_COSCS (SecY-independent transporter protein n=19 Tax=Laminariales TaxID=2886 RepID=W5RG32_COSCS) HSP 1 Score: 339 bits (870), Expect = 6.180e-115 Identity = 163/256 (63.67%), Postives = 208/256 (81.25%), Query Frame = 1 Query: 1 MKRLKLSIYYIQELNYRLAYATLGTTLIFFTTYIYKQGLIFLLLPRGLSHFVSSGLTEIFFTYIQLCIILSLSFGIFLVVSQSYIFLRPGMYTYESNTFLRLLISAFCFYVCIYVLIFPTLIKIIWELFLTYSQNFTPINLTFEPRLNNYLDHVQQLNKILIFSFPCLLTLNLFQKYTNKQLWVKHRGIAYIVAFFIAAFITPPDIISQIFVGAPLIFFFEAQIVTWTFYKKYQQQFLVRQPIKPHKNTLRNKK*S 768 M RL+ SIYY+QEL YRLAYA GT +F T Y YKQGLIF+ LP+GLSHFVS+GLTEIFFTY+Q+C I S SFG+ + ++Q Y+FLRPG+Y +E+NT LLI+AF FY C+Y+ IFP ++K++WELFLTYSQNFT I+LTFEPRL++YL H+QQLNK L FSFPCL+ LN Q YT+KQ WVK+RGIAYI+AF +AAFITPPD++SQ +G PLI +E Q+ W+ Y++Y++Q L+RQPIKPHK + RNK+ S Sbjct: 1 MNRLQTSIYYLQELKYRLAYAIFGTIFLFSTAYTYKQGLIFIFLPKGLSHFVSTGLTEIFFTYLQICTIFSFSFGLGITLTQLYLFLRPGLYAFEANTIFNLLITAFLFYTCLYIFIFPIIVKMLWELFLTYSQNFTAIDLTFEPRLHDYLTHLQQLNKALTFSFPCLIALNTVQIYTSKQTWVKYRGIAYIIAFSLAAFITPPDVLSQTLLGVPLIVCYEVQLKFWSLYEEYKKQLLIRQPIKPHKYSNRNKEKS 256
BLAST of mRNA_E-siliculosus-1a_F_contig10134.143.1 vs. uniprot
Match: A0A516ICK0_9PHAE (SecY-independent transporter protein n=3 Tax=Lessonia TaxID=105411 RepID=A0A516ICK0_9PHAE) HSP 1 Score: 338 bits (866), Expect = 2.340e-114 Identity = 164/254 (64.57%), Postives = 205/254 (80.71%), Query Frame = 1 Query: 1 MKRLKLSIYYIQELNYRLAYATLGTTLIFFTTYIYKQGLIFLLLPRGLSHFVSSGLTEIFFTYIQLCIILSLSFGIFLVVSQSYIFLRPGMYTYESNTFLRLLISAFCFYVCIYVLIFPTLIKIIWELFLTYSQNFTPINLTFEPRLNNYLDHVQQLNKILIFSFPCLLTLNLFQKYTNKQLWVKHRGIAYIVAFFIAAFITPPDIISQIFVGAPLIFFFEAQIVTWTFYKKYQQQFLVRQPIKPHKNTLRNKK 762 M +L++SIYY+QE NYRL Y GT IF TTY YKQ LIF+ LP+GLSHFVS+GLTEIFFTY+Q+C I SLS GI + + Q Y+FLRPG+Y +E+ T LLI+A FYVC+YV+IFP +IKI+WELF TYSQNFT ++LTFEP+L +YL H+QQLNK L FSFPCL+ LN+ Q YTNKQ WVK+RGIAYI AFFIAAFITPPDI+SQ +G PLI ++E Q+ W+ Y++Y++Q L+RQPIK HKN+ R+KK Sbjct: 1 MNKLQISIYYLQEFNYRLIYTIFGTMFIFITTYTYKQSLIFIFLPQGLSHFVSTGLTEIFFTYLQVCTIFSLSCGIGIAIIQLYLFLRPGLYAFEAKTIFHLLITALIFYVCLYVIIFPIIIKILWELFSTYSQNFTALDLTFEPKLQDYLYHLQQLNKALSFSFPCLIVLNMLQFYTNKQTWVKYRGIAYITAFFIAAFITPPDILSQTLLGLPLILYYELQLKFWSLYEEYKKQLLIRQPIKSHKNSYRDKK 254
BLAST of mRNA_E-siliculosus-1a_F_contig10134.143.1 vs. uniprot
Match: A0A0U1XGV1_9PHAE (SecY-independent protein translocase component tatC n=1 Tax=Colpomenia peregrina TaxID=27965 RepID=A0A0U1XGV1_9PHAE) HSP 1 Score: 336 bits (861), Expect = 1.020e-113 Identity = 164/244 (67.21%), Postives = 201/244 (82.38%), Query Frame = 1 Query: 1 MKRLKLSIYYIQELNYRLAYATLGTTLIFFTTYIYKQGLIFLLLPRGLSHFVSSGLTEIFFTYIQLCIILSLSFGIFLVVSQSYIFLRPGMYTYESNTFLRLLISAFCFYVCIYVLIFPTLIKIIWELFLTYSQNFTPINLTFEPRLNNYLDHVQQLNKILIFSFPCLLTLNLFQKYTNKQLWVKHRGIAYIVAFFIAAFITPPDIISQIFVGAPLIFFFEAQIVTWTFYKKYQQQFLVRQPIK 732 MK++++ IYY+QELNYRLAY+ +GT L+F TTYIYKQ LIFL+LP+GLSHF+S+GLTEIFFTY+QLC I+S SFGI L V Q Y+FLRPG++ YES L LLI FY +Y+++FP L+K +WELF TYS NFTPI+LTFEPRLN+YL+H+Q LNKIL FSFPCL+TLNL QKYT K LWVK+RGIAYI+ F IAA +TPPDI+SQ V PLIFFFE QI+ W Y++YQ+Q L+RQPIK Sbjct: 1 MKKIRIFIYYLQELNYRLAYSVIGTLLLFSTTYIYKQSLIFLILPQGLSHFISAGLTEIFFTYMQLCTIISFSFGIILTVLQIYLFLRPGLFFYESKITLNLLIGIILFYTYLYLILFPLLVKFLWELFTTYSNNFTPIHLTFEPRLNDYLEHIQHLNKILSFSFPCLITLNLIQKYTKKILWVKYRGIAYIIVFSIAACLTPPDILSQTIVALPLIFFFELQIIFWALYQEYQKQLLIRQPIK 244
BLAST of mRNA_E-siliculosus-1a_F_contig10134.143.1 vs. uniprot
Match: S4S3T7_LAMHY (SecY-independent transporter protein n=8 Tax=Laminariaceae TaxID=33636 RepID=S4S3T7_LAMHY) HSP 1 Score: 334 bits (856), Expect = 7.760e-113 Identity = 159/254 (62.60%), Postives = 203/254 (79.92%), Query Frame = 1 Query: 1 MKRLKLSIYYIQELNYRLAYATLGTTLIFFTTYIYKQGLIFLLLPRGLSHFVSSGLTEIFFTYIQLCIILSLSFGIFLVVSQSYIFLRPGMYTYESNTFLRLLISAFCFYVCIYVLIFPTLIKIIWELFLTYSQNFTPINLTFEPRLNNYLDHVQQLNKILIFSFPCLLTLNLFQKYTNKQLWVKHRGIAYIVAFFIAAFITPPDIISQIFVGAPLIFFFEAQIVTWTFYKKYQQQFLVRQPIKPHKNTLRNKK 762 M RL+ SIYY+QEL YRLAYA GT +F TTY YKQGLIF+ LP+GLSHFVS+GLTEIFFTY+Q+C I S SFG+ + ++Q Y+FLRPG+Y +E+NT LLI+AF FY C+Y+ +FP ++K++WELF YSQNFT I+LTFEPRL +YL H+QQLNK L SFPC++TLN+ Q YT KQ WVK+RGIAYI AF IAAFITPPD++SQ +G PLI F+E Q+ W Y++Y++Q L+RQPIK H+N+ +KK Sbjct: 1 MNRLQTSIYYLQELKYRLAYAIFGTIFLFSTTYTYKQGLIFIFLPKGLSHFVSTGLTEIFFTYLQICTIFSFSFGLGITLTQLYLFLRPGLYAFEANTIFNLLITAFLFYTCLYIFVFPIIVKVLWELFSAYSQNFTAIDLTFEPRLKDYLYHLQQLNKTLTLSFPCIITLNIIQIYTKKQTWVKYRGIAYIAAFSIAAFITPPDVLSQTLIGLPLIVFYEIQLKLWFLYEEYKKQLLIRQPIKSHENSYGDKK 254
BLAST of mRNA_E-siliculosus-1a_F_contig10134.143.1 vs. uniprot
Match: A0A089N2X8_PETFA (SecY-independent protein translocase component tatC n=1 Tax=Petalonia fascia TaxID=2893 RepID=A0A089N2X8_PETFA) HSP 1 Score: 333 bits (853), Expect = 2.220e-112 Identity = 159/254 (62.60%), Postives = 205/254 (80.71%), Query Frame = 1 Query: 1 MKRLKLSIYYIQELNYRLAYATLGTTLIFFTTYIYKQGLIFLLLPRGLSHFVSSGLTEIFFTYIQLCIILSLSFGIFLVVSQSYIFLRPGMYTYESNTFLRLLISAFCFYVCIYVLIFPTLIKIIWELFLTYSQNFTPINLTFEPRLNNYLDHVQQLNKILIFSFPCLLTLNLFQKYTNKQLWVKHRGIAYIVAFFIAAFITPPDIISQIFVGAPLIFFFEAQIVTWTFYKKYQQQFLVRQPIKPHKNTLRNKK 762 MK+L LSI+Y+QEL YRL YA GT L+FF TY YKQ LI+++LP+GLSHF+++GLTEIFFTY+QLC I+S+SFG+ + Q Y+FLRPG+Y++ES L +LI FY +Y IFP LIK +WELFLTYSQNF PI+LTFEPRLN+YL+HVQ LN++L S P ++TLNL Q+YT K+LWVK+RGIAYI AF +AAFITPPDI+SQ+F+G P+I F+E QI+ W YK+YQ+Q L+ QP+K +KN LRNK+ Sbjct: 1 MKKLHLSIFYLQELKYRLLYAAAGTILLFFITYQYKQALIYIILPQGLSHFITAGLTEIFFTYMQLCSIISISFGLITAILQIYLFLRPGLYSFESKIVLNILICTLLFYTYLYTTIFPLLIKFLWELFLTYSQNFAPIHLTFEPRLNDYLEHVQHLNEVLCLSLPSIITLNLLQRYTKKKLWVKYRGIAYIAAFSLAAFITPPDILSQVFIGFPIILFYELQIIFWALYKQYQEQLLIWQPVKTYKNPLRNKE 254
BLAST of mRNA_E-siliculosus-1a_F_contig10134.143.1 vs. uniprot
Match: A0A8F0FDV4_9PHAE (SecY-independent transporter protein n=2 Tax=Ecklonia TaxID=105406 RepID=A0A8F0FDV4_9PHAE) HSP 1 Score: 332 bits (851), Expect = 4.460e-112 Identity = 163/254 (64.17%), Postives = 203/254 (79.92%), Query Frame = 1 Query: 1 MKRLKLSIYYIQELNYRLAYATLGTTLIFFTTYIYKQGLIFLLLPRGLSHFVSSGLTEIFFTYIQLCIILSLSFGIFLVVSQSYIFLRPGMYTYESNTFLRLLISAFCFYVCIYVLIFPTLIKIIWELFLTYSQNFTPINLTFEPRLNNYLDHVQQLNKILIFSFPCLLTLNLFQKYTNKQLWVKHRGIAYIVAFFIAAFITPPDIISQIFVGAPLIFFFEAQIVTWTFYKKYQQQFLVRQPIKPHKNTLRNKK 762 M RL++SIYY+QELNYRLAYA LGT +F TTY YKQ LIF++LP+GLSHFVS+G+TEIFFTYIQL I S SF I + ++Q Y+FLRPG YT+E+ LLI+A FY+C+Y++IFP ++KI+WELF TYSQNFT I+LTFEP+L NYL H+QQLNK L SFPCL+ LN+ Q YTNKQ WVK+RGIAYI AF IAAFITPPDI+SQ +G PLI F+E Q+ W+ Y++Y++Q L+RQPIK H+ R KK Sbjct: 1 MNRLQISIYYLQELNYRLAYAILGTLFLFITTYTYKQSLIFIILPKGLSHFVSTGITEIFFTYIQLSTIFSFSFSICITLTQLYLFLRPGFYTFEAKITFNLLITALIFYICLYIVIFPIIVKILWELFSTYSQNFTAIDLTFEPKLENYLSHLQQLNKALTLSFPCLVILNILQIYTNKQTWVKYRGIAYITAFSIAAFITPPDILSQTLIGFPLIIFYELQLKFWSLYEEYKKQLLIRQPIKSHEYPNRYKK 254
BLAST of mRNA_E-siliculosus-1a_F_contig10134.143.1 vs. uniprot
Match: A0A8F0K0V4_9PHAE (SecY-independent transporter protein n=2 Tax=Agaraceae TaxID=2012474 RepID=A0A8F0K0V4_9PHAE) HSP 1 Score: 330 bits (847), Expect = 1.810e-111 Identity = 159/254 (62.60%), Postives = 203/254 (79.92%), Query Frame = 1 Query: 1 MKRLKLSIYYIQELNYRLAYATLGTTLIFFTTYIYKQGLIFLLLPRGLSHFVSSGLTEIFFTYIQLCIILSLSFGIFLVVSQSYIFLRPGMYTYESNTFLRLLISAFCFYVCIYVLIFPTLIKIIWELFLTYSQNFTPINLTFEPRLNNYLDHVQQLNKILIFSFPCLLTLNLFQKYTNKQLWVKHRGIAYIVAFFIAAFITPPDIISQIFVGAPLIFFFEAQIVTWTFYKKYQQQFLVRQPIKPHKNTLRNKK 762 M RL++SIYY+QELNYRL YA LGT +FFTTY YKQGLIF+ LP+GLSHFVS+GLTEIFFTY+QLC I S SFG+ + ++Q Y+FLRPG+YT+E+ LLI+ FY C+Y+ IFP ++K++WELF YSQNFT I+LTFEPRL++YL H++QLNK L SFPCL+ L + Q YT++Q WVK+RGIAYIVAF IAAFITPPD++SQ +G PLI F+E Q+ W Y+ Y++Q L+RQPI+ HK + RNKK Sbjct: 1 MNRLQISIYYLQELNYRLTYAILGTLFLFFTTYTYKQGLIFIFLPKGLSHFVSTGLTEIFFTYLQLCTIFSFSFGLGITLTQLYLFLRPGLYTFEARITFNLLITTIIFYSCLYIFIFPIIVKVLWELFSAYSQNFTAIDLTFEPRLHDYLSHLRQLNKALTLSFPCLIALQIVQIYTSRQTWVKYRGIAYIVAFSIAAFITPPDVLSQTLIGLPLIIFYEIQLKFWALYEGYKKQLLIRQPIESHKYSDRNKK 254
BLAST of mRNA_E-siliculosus-1a_F_contig10134.143.1 vs. uniprot
Match: A0A8F0K1B9_9PHAE (SecY-independent transporter protein n=7 Tax=Alariaceae TaxID=2887 RepID=A0A8F0K1B9_9PHAE) HSP 1 Score: 330 bits (845), Expect = 3.650e-111 Identity = 160/254 (62.99%), Postives = 201/254 (79.13%), Query Frame = 1 Query: 1 MKRLKLSIYYIQELNYRLAYATLGTTLIFFTTYIYKQGLIFLLLPRGLSHFVSSGLTEIFFTYIQLCIILSLSFGIFLVVSQSYIFLRPGMYTYESNTFLRLLISAFCFYVCIYVLIFPTLIKIIWELFLTYSQNFTPINLTFEPRLNNYLDHVQQLNKILIFSFPCLLTLNLFQKYTNKQLWVKHRGIAYIVAFFIAAFITPPDIISQIFVGAPLIFFFEAQIVTWTFYKKYQQQFLVRQPIKPHKNTLRNKK 762 M LK+SIYY+QELNYRLAYA GT +F TTY YKQGLIF+ LP+GLSHFVS+GLTEIFFTY+Q C I S + ++Q Y+FLRPG+Y +ES T L LLI+A FY+C+YV +FP + KI+WELF YSQNFT I+LTFEPRL++YL H+QQLNK+L SFPCL+ LN+ Q YTN+ +WVK+RGIAYI AFFIAAFITPPD++SQ +G PLI F+E Q+ W+ Y+ Y++Q L+RQPIK HK + R+KK Sbjct: 1 MNSLKISIYYLQELNYRLAYAIFGTFFLFSTTYTYKQGLIFIFLPKGLSHFVSTGLTEIFFTYLQFCTIFSFXXXXXIALTQLYLFLRPGLYAFESKTILNLLIAAIVFYICLYVFLFPIITKILWELFSDYSQNFTAIDLTFEPRLHDYLLHLQQLNKVLTLSFPCLIALNIVQIYTNRHIWVKYRGIAYITAFFIAAFITPPDVLSQTLIGLPLIIFYEIQLKIWSLYEGYKKQLLLRQPIKSHKYSYRDKK 254 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10134.143.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10134.143.1 >prot_E-siliculosus-1a_F_contig10134.143.1 ID=prot_E-siliculosus-1a_F_contig10134.143.1|Name=mRNA_E-siliculosus-1a_F_contig10134.143.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=255bp MKRLKLSIYYIQELNYRLAYATLGTTLIFFTTYIYKQGLIFLLLPRGLSHback to top mRNA from alignment at E-siliculosus-1a_F_contig10134:1860..2677+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig10134.143.1 ID=mRNA_E-siliculosus-1a_F_contig10134.143.1|Name=mRNA_E-siliculosus-1a_F_contig10134.143.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=818bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10134:1860..2677+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10134:1860..2677+ >mRNA_E-siliculosus-1a_F_contig10134.143.1 ID=mRNA_E-siliculosus-1a_F_contig10134.143.1|Name=mRNA_E-siliculosus-1a_F_contig10134.143.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1530bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10134:1860..2677+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |