mRNA_E-siliculosus-1a_F_contig10134.142.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10134.142.1 vs. uniprot
Match: E6ZER1_ECTSI (Ribosomal protein S7 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=E6ZER1_ECTSI) HSP 1 Score: 291 bits (744), Expect = 7.270e-99 Identity = 152/165 (92.12%), Postives = 156/165 (94.55%), Query Frame = 1 Query: 1 MLAKEDKNNFVSFNKIKSDPLVTKMTNLLMRHGKRSKAEKILFKALQALDKIYPGQATHIFYLAIIAAKQDIAVRIKPKPKKRRNKQSFNVYLPRVISPTCGLSLGMRSILKISRERSQLSLLPLWESLSQELLQASQSKGKVVEKRYKVNKLAISNKRKVHFAI 495 MLAKEDKNNFV N+IKSDPL+TKM NLLMRHGKRSKAEKILFKALQ LDK+YPGQATHIFYL IIA KQDIAVRIKPKPKKRRNKQSFNVYLPRVISPTCGL+LGMRSILK SRERSQLSL PLWESLSQELLQASQSKGKVV KRYKVNKLAISNKRKVHFAI Sbjct: 1 MLAKEDKNNFVHLNRIKSDPLITKMINLLMRHGKRSKAEKILFKALQVLDKVYPGQATHIFYLGIIAVKQDIAVRIKPKPKKRRNKQSFNVYLPRVISPTCGLNLGMRSILKTSRERSQLSLSPLWESLSQELLQASQSKGKVVAKRYKVNKLAISNKRKVHFAI 165
BLAST of mRNA_E-siliculosus-1a_F_contig10134.142.1 vs. uniprot
Match: A0A0U1XGE3_9PHAE (Ribosomal protein S7 n=1 Tax=Colpomenia peregrina TaxID=27965 RepID=A0A0U1XGE3_9PHAE) HSP 1 Score: 233 bits (595), Expect = 3.640e-76 Identity = 124/167 (74.25%), Postives = 142/167 (85.03%), Query Frame = 1 Query: 1 MLAKEDKNNFVSFNKIKSDPLVTKMTNLLMRHGKRSKAEKILFKALQALDKIYPGQATHIFYLAIIAAKQDIAVRIKPKPKKRRNKQSFNVYLPRVISPTCGLSLGMRSILKISRERSQLSLLPLWESLSQELLQASQSKGKVVEKRYKVNKLAISNKRKVHFAIYR 501 ML KE++NN V IKSDPLV KM NLLM+ GKRSKAEK+LFK Q LDK YPGQ+ IFYL +IA KQDIAVR+KPKPKKRRNKQSF+VYLPR+ISPT GL LG+RSILK S+ERSQ S LPLWESLSQELLQASQ+KG+VV K+Y V+KLA+SNKR+VHF+I R Sbjct: 1 MLVKENQNNNVDNLIIKSDPLVKKMINLLMKDGKRSKAEKVLFKCFQLLDKNYPGQSMRIFYLGVIAVKQDIAVRLKPKPKKRRNKQSFDVYLPRIISPTRGLGLGIRSILKTSKERSQQSFLPLWESLSQELLQASQNKGEVVLKKYSVSKLALSNKRRVHFSIRR 167
BLAST of mRNA_E-siliculosus-1a_F_contig10134.142.1 vs. uniprot
Match: A0A089N0X3_PETFA (Ribosomal protein S7 n=1 Tax=Petalonia fascia TaxID=2893 RepID=A0A089N0X3_PETFA) HSP 1 Score: 231 bits (590), Expect = 2.030e-75 Identity = 124/167 (74.25%), Postives = 143/167 (85.63%), Query Frame = 1 Query: 1 MLAKEDKNNFVSFNKIKSDPLVTKMTNLLMRHGKRSKAEKILFKALQALDKIYPGQATHIFYLAIIAAKQDIAVRIKPKPKKRRNKQSFNVYLPRVISPTCGLSLGMRSILKISRERSQLSLLPLWESLSQELLQASQSKGKVVEKRYKVNKLAISNKRKVHFAIYR 501 ML KE KNN V +KIKSDPLV KM NLLM+ GKRSKAEK+LF + QALDK +PGQ+ HIFYLAIIA KQDIAVR+KPKPKKR+N QSF++YLPRVISP GLSLG+RSILK S++RSQ S +PLWESLSQELLQASQ+KG VV +RY V+KLA SNKR+VHFA+ R Sbjct: 1 MLIKEKKNN-VYGSKIKSDPLVKKMINLLMKDGKRSKAEKVLFNSFQALDKEFPGQSIHIFYLAIIAVKQDIAVRVKPKPKKRKNNQSFDIYLPRVISPIRGLSLGIRSILKSSKDRSQQSFIPLWESLSQELLQASQNKGVVVTRRYSVSKLAASNKRRVHFAVRR 166
BLAST of mRNA_E-siliculosus-1a_F_contig10134.142.1 vs. uniprot
Match: Q94Z12_PYLLI (Ribosomal protein S7 n=1 Tax=Pylaiella littoralis TaxID=2885 RepID=Q94Z12_PYLLI) HSP 1 Score: 228 bits (580), Expect = 6.550e-74 Identity = 114/158 (72.15%), Postives = 136/158 (86.08%), Query Frame = 1 Query: 22 NNFVSFNKIKSDPLVTKMTNLLMRHGKRSKAEKILFKALQALDKIYPGQATHIFYLAIIAAKQDIAVRIKPKPKKRRNKQSFNVYLPRVISPTCGLSLGMRSILKISRERSQLSLLPLWESLSQELLQASQSKGKVVEKRYKVNKLAISNKRKVHFAI 495 NN++ ++KSDPL TKM NLLMRHGKRSKAEK+L +ALQ LDK YPGQA HIFY +I KQD+AVR+KPKP+K RNKQS+N+YLPRVISP CGL LG+RSI+K S++RSQ S LPLWESLSQELLQASQ+KG VVEK+YKV+ LA++NKR+VHF I Sbjct: 6 NNYLYSLRVKSDPLATKMINLLMRHGKRSKAEKVLSRALQNLDKNYPGQALHIFYSGVINVKQDVAVRLKPKPRKSRNKQSYNIYLPRVISPVCGLGLGIRSIIKASKDRSQSSFLPLWESLSQELLQASQNKGGVVEKKYKVHGLALANKRRVHFDI 163
BLAST of mRNA_E-siliculosus-1a_F_contig10134.142.1 vs. uniprot
Match: A0A0U1V7B7_SCYLO (Ribosomal protein S7 n=1 Tax=Scytosiphon lomentaria TaxID=27967 RepID=A0A0U1V7B7_SCYLO) HSP 1 Score: 221 bits (563), Expect = 2.620e-71 Identity = 120/167 (71.86%), Postives = 137/167 (82.04%), Query Frame = 1 Query: 1 MLAKEDKNNFVSFNKIKSDPLVTKMTNLLMRHGKRSKAEKILFKALQALDKIYPGQATHIFYLAIIAAKQDIAVRIKPKPKKRRNKQSFNVYLPRVISPTCGLSLGMRSILKISRERSQLSLLPLWESLSQELLQASQSKGKVVEKRYKVNKLAISNKRKVHFAIYR 501 ML K+ NN +IK+DPLV KM NLLM+ GKRSKAEK+LFK+ QALDK YPGQ+ +IFYLAIIA KQDIA+R+KPKPKKRR QSFNVYLPRVISP GLSLG+RSILK S+ERSQ S +PLWESLSQEL +ASQ KG VV KRY V+KLA SN+R+VHF I R Sbjct: 1 MLVKDKVNNNYGL-RIKTDPLVKKMINLLMKDGKRSKAEKVLFKSFQALDKDYPGQSINIFYLAIIAVKQDIAIRVKPKPKKRRTTQSFNVYLPRVISPLRGLSLGIRSILKSSKERSQESFIPLWESLSQELFKASQDKGDVVAKRYSVSKLAASNRRRVHFNIRR 166
BLAST of mRNA_E-siliculosus-1a_F_contig10134.142.1 vs. uniprot
Match: A0A8E8U536_ALAES (Ribosomal protein S7 n=8 Tax=Alariaceae TaxID=2887 RepID=A0A8E8U536_ALAES) HSP 1 Score: 221 bits (562), Expect = 3.600e-71 Identity = 114/161 (70.81%), Postives = 134/161 (83.23%), Query Frame = 1 Query: 13 EDKNNFVSFNKIKSDPLVTKMTNLLMRHGKRSKAEKILFKALQALDKIYPGQATHIFYLAIIAAKQDIAVRIKPKPKKRRNKQSFNVYLPRVISPTCGLSLGMRSILKISRERSQLSLLPLWESLSQELLQASQSKGKVVEKRYKVNKLAISNKRKVHFAI 495 + K + F IKSDPLV KM NLLMR GKRSKAE +L KALQALDK YPG+A HIFYL I+A +QDI VR+KPKPK RRNKQSFNVYLPRVISP CGL+LGMRS+LK SR+RS S PLWE+LS+ELL+ASQ+KG+VV KRY +NKLA+SNKR++HF + Sbjct: 5 DKKKKSIKFLGIKSDPLVKKMINLLMRDGKRSKAENVLNKALQALDKDYPGRAIHIFYLGILAVRQDIGVRLKPKPKTRRNKQSFNVYLPRVISPICGLNLGMRSLLKASRDRSMAS--PLWENLSKELLKASQNKGEVVSKRYSLNKLAVSNKRRIHFGV 163
BLAST of mRNA_E-siliculosus-1a_F_contig10134.142.1 vs. uniprot
Match: A0A3G5FPM3_9PHAE (Ribosomal protein S7 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A3G5FPM3_9PHAE) HSP 1 Score: 219 bits (559), Expect = 1.100e-70 Identity = 114/153 (74.51%), Postives = 130/153 (84.97%), Query Frame = 1 Query: 43 KIKSDPLVTKMTNLLMRHGKRSKAEKILFKALQALDKIYPGQATHIFYLAIIAAKQDIAVRIKPKPKKRRNKQSFNVYLPRVISPTCGLSLGMRSILKISRERSQLSLLPLWESLSQELLQASQSKGKVVEKRYKVNKLAISNKRKVHFAIYR 501 K KSDPLV K NLLM HGKRSKAEKILF+ QALDK YPGQ+ IFY A++A+KQDIAVR+KP PKKRR KQS+NVYLPR+I+P CGLSLG+RS++K SRERSQ S PLWESLSQEL QASQ+KG VV +RY+VNKLAISNKR+VHFA R Sbjct: 15 KFKSDPLVIKAINLLMCHGKRSKAEKILFQTFQALDKDYPGQSFRIFYSAVMASKQDIAVRLKPNPKKRRRKQSYNVYLPRLITPMCGLSLGIRSLIKASRERSQSSFSPLWESLSQELFQASQNKGGVVAERYRVNKLAISNKRRVHFATRR 167
BLAST of mRNA_E-siliculosus-1a_F_contig10134.142.1 vs. uniprot
Match: A0A2H4ZR10_9PHAE (Ribosomal protein S7 n=2 Tax=Endarachne binghamiae TaxID=698476 RepID=A0A2H4ZR10_9PHAE) HSP 1 Score: 219 bits (558), Expect = 1.370e-70 Identity = 114/161 (70.81%), Postives = 137/161 (85.09%), Query Frame = 1 Query: 19 KNNFVSFNKIKSDPLVTKMTNLLMRHGKRSKAEKILFKALQALDKIYPGQATHIFYLAIIAAKQDIAVRIKPKPKKRRNKQSFNVYLPRVISPTCGLSLGMRSILKISRERSQLSLLPLWESLSQELLQASQSKGKVVEKRYKVNKLAISNKRKVHFAIYR 501 K N V +KIKSDPLV KM NLLM+ GK+SKAEK+LF +LQALDK YPGQ+ +IFY A+IA +QDIAVR+KPKPKKR++ SF++YLPRVISP GLSLG+RSILK S++RSQ S +PLWESLS+ELLQASQ+KG VV +RY V+KLA SNKR+VHFAI R Sbjct: 3 KKNHVYSSKIKSDPLVKKMINLLMKDGKKSKAEKVLFNSLQALDKSYPGQSIYIFYSAVIAVRQDIAVRVKPKPKKRKSNNSFDIYLPRVISPIRGLSLGIRSILKSSKDRSQQSFIPLWESLSEELLQASQNKGAVVARRYSVSKLASSNKRRVHFAIRR 163
BLAST of mRNA_E-siliculosus-1a_F_contig10134.142.1 vs. uniprot
Match: A0A1I9LW96_9PHAE (Ribosomal protein S7 (Fragment) n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LW96_9PHAE) HSP 1 Score: 219 bits (558), Expect = 1.560e-70 Identity = 115/164 (70.12%), Postives = 137/164 (83.54%), Query Frame = 1 Query: 10 KEDKNNFVSFNKIKSDPLVTKMTNLLMRHGKRSKAEKILFKALQALDKIYPGQATHIFYLAIIAAKQDIAVRIKPKPKK--RRNKQSFNVYLPRVISPTCGLSLGMRSILKISRERSQLSLLPLWESLSQELLQASQSKGKVVEKRYKVNKLAISNKRKVHFAI 495 K+DKNN ++ +KIKSDPLVTKM +LLMRHGKRSKAEK+L K LDK YPGQ+ IFY AII A+QDIAVR+KPK KK RRNK S++VY+PRVI P CG++LG+RSILK SRERS+ S LPLWESLSQEL +ASQ+KGKV+E R+KVN LA+SNK KV F+I Sbjct: 2 KKDKNNLINSDKIKSDPLVTKMISLLMRHGKRSKAEKVLSKTFLFLDKDYPGQSIDIFYTAIINARQDIAVRLKPKSKKKTRRNKHSYDVYIPRVILPICGINLGIRSILKASRERSKFSFLPLWESLSQELFEASQNKGKVIENRFKVNSLAVSNKGKVRFSI 165
BLAST of mRNA_E-siliculosus-1a_F_contig10134.142.1 vs. uniprot
Match: A0A8F0JZY2_AKKLU (Ribosomal protein S7 n=1 Tax=Akkesiphycus lubricus TaxID=3022 RepID=A0A8F0JZY2_AKKLU) HSP 1 Score: 218 bits (556), Expect = 6.710e-70 Identity = 112/161 (69.57%), Postives = 136/161 (84.47%), Query Frame = 1 Query: 13 EDKNNFVSFNKIKSDPLVTKMTNLLMRHGKRSKAEKILFKALQALDKIYPGQATHIFYLAIIAAKQDIAVRIKPKPKKRRNKQSFNVYLPRVISPTCGLSLGMRSILKISRERSQLSLLPLWESLSQELLQASQSKGKVVEKRYKVNKLAISNKRKVHFAI 495 E++ N ++F IKSDPLV KM NLLMR+GKRSKAE +L +A QALDK YPG+A HIFYL I+A +QDI VR+KPKPK RRN+QSFNVY+PRVISP CGL+LGMRS+LK SR+RS S P WE+LS+ELLQASQ++G+VV KRY +NKLAISNKR+VHF + Sbjct: 30 ENQKNTLNFLGIKSDPLVKKMINLLMRNGKRSKAENVLNQAFQALDKDYPGRAIHIFYLGILAVRQDIGVRLKPKPKNRRNRQSFNVYIPRVISPICGLNLGMRSLLKASRDRSSSS--PFWENLSKELLQASQNRGEVVSKRYSLNKLAISNKRRVHFGV 188 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10134.142.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10134.142.1 >prot_E-siliculosus-1a_F_contig10134.142.1 ID=prot_E-siliculosus-1a_F_contig10134.142.1|Name=mRNA_E-siliculosus-1a_F_contig10134.142.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=168bp MLAKEDKNNFVSFNKIKSDPLVTKMTNLLMRHGKRSKAEKILFKALQALDback to top mRNA from alignment at E-siliculosus-1a_F_contig10134:456..959- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig10134.142.1 ID=mRNA_E-siliculosus-1a_F_contig10134.142.1|Name=mRNA_E-siliculosus-1a_F_contig10134.142.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=504bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10134:456..959- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10134:456..959- >mRNA_E-siliculosus-1a_F_contig10134.142.1 ID=mRNA_E-siliculosus-1a_F_contig10134.142.1|Name=mRNA_E-siliculosus-1a_F_contig10134.142.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1008bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10134:456..959- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |