mRNA_E-siliculosus-1a_F_contig10128.138.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10128.138.1 vs. uniprot
Match: A0A7M1KEL5_9PSED (Lipoprotein n=3 Tax=Pseudomonas TaxID=286 RepID=A0A7M1KEL5_9PSED) HSP 1 Score: 239 bits (609), Expect = 1.470e-75 Identity = 125/248 (50.40%), Postives = 170/248 (68.55%), Query Frame = 1 Query: 1 MPRLILYFLLVLTFPILSGCNGQQSLYDDLSQGSANEVMAELISNGIPVKSRRSDSGFSVLIHQSDTARAVHILSTAGLPREPRADLGSTFEKAGIISTPFEERARYIYALAQEMESTLTQIDGVTQARVQVVLPDRIAPGEPVHPASASVFIKHNAFLTPDAIHPRIRQLVMSSIPGLSQQGGNSSRVSIVFVPTREFADTGPEMTYFGPYLIPRHAANFWKMTLVISSIVVLLLCAGIGWLLWRRR 744 M R + +L+ T +LSGC L+ ++S+ ANEV+AEL I + G +V + +D +RAV L AGLPR R+ LG F K G+ISTP EERARYIYAL+QE+ESTL+ IDGV ARV VVLP+R+APGEPV PASASVFIKHN L PD I+PR+R++V SSIPG++ N+++++++FVP + + ++T+FGP+L+P FW+ +LV IV+LL GIGWL+WRRR Sbjct: 1 MFRRLTTLVLLSTVLMLSGCGESVELHRNISEQEANEVIAELADKQIRAQKIPGKDGVAVRVKANDISRAVRTLDAAGLPRTARSTLGDIFRKEGVISTPLEERARYIYALSQELESTLSNIDGVIVARVHVVLPERVAPGEPVQPASASVFIKHNPRLDPDNINPRVRRMVASSIPGMASAIDNTTKLTVIFVPATAYTEQ-QQLTHFGPFLVPVQELGFWRTSLVAPVIVILL--GGIGWLVWRRR 245
BLAST of mRNA_E-siliculosus-1a_F_contig10128.138.1 vs. uniprot
Match: UPI0015A03CDD (type III secretion inner membrane ring lipoprotein SctJ n=1 Tax=Pseudomonas costantinii TaxID=168469 RepID=UPI0015A03CDD) HSP 1 Score: 233 bits (595), Expect = 1.940e-73 Identity = 124/248 (50.00%), Postives = 173/248 (69.76%), Query Frame = 1 Query: 1 MPRLILYFLLVLTFPILSGCNGQQSLYDDLSQGSANEVMAELISNGIPVKSRRSDSGFSVLIHQSDTARAVHILSTAGLPREPRADLGSTFEKAGIISTPFEERARYIYALAQEMESTLTQIDGVTQARVQVVLPDRIAPGEPVHPASASVFIKHNAFLTPDAIHPRIRQLVMSSIPGLSQQGGNSSRVSIVFVPTREFADTGPEMTYFGPYLIPRHAANFWKMTLVISSIVVLLLCAGIGWLLWRRR 744 + LIL+ L+++ L+GC L+ ++S+ ANEV+AEL I + G +V + SD +RAV L AGLPR R+ LG F K G+ISTP EERARYIYAL+QE+ESTL++IDGV ARV VVLP+R+APGEPV PASASVFIKH+ L PD I+PR+R++V+SSIPG++ N++++++VFVP + + ++TY GP+L+P FW+ + ++ +VVL+L GIGWLLWRRR Sbjct: 5 LTTLILFSLVLM----LTGCGESVELHRNISESEANEVIAELADKQIRAQKIPGKDGVAVRVKASDISRAVRTLDAAGLPRLARSTLGDIFRKEGVISTPLEERARYIYALSQELESTLSKIDGVIVARVHVVLPERVAPGEPVQPASASVFIKHDPRLDPDNINPRVRRMVVSSIPGMASAIDNTTKLTVVFVPATAYKER-QQLTYLGPFLVPEQDLGFWRAS-AMAPLVVLML-GGIGWLLWRRR 245
BLAST of mRNA_E-siliculosus-1a_F_contig10128.138.1 vs. uniprot
Match: A0A0A7JTL7_9PSED (Lipoprotein n=2 Tax=Pseudomonas parafulva TaxID=157782 RepID=A0A0A7JTL7_9PSED) HSP 1 Score: 234 bits (596), Expect = 3.510e-73 Identity = 119/231 (51.52%), Postives = 158/231 (68.40%), Query Frame = 1 Query: 46 ILSGCNGQQSLYDDLSQGSANEVMAELISNGIPVKSRRSDSGFSVLIHQSDTARAVHILSTAGLPREPRADLGSTFEKAGIISTPFEERARYIYALAQEMESTLTQIDGVTQARVQVVLPDRIAPGEPVHPASASVFIKHNAFLTPDAIHPRIRQLVMSSIPGLSQQGGNSSRVSIVFVPTREFADTGPEMTYFGPYLIPRHAANFWKMTLVISSIVVLLLCAGIGWLLWR 738 +L+ C + +L+ LS+ ANEV+A+L N I R G SVL+ +D AV +L AGLPR RA LG F K G+ISTP EERARYIYAL+QE+ESTL+QIDGV ARV VVLP+R+APGEPV PASASVFIKH L PD+I PR+R L+ S IPG++ N+S++S+VFVPT + + EM FGP+L+ +W+ +V++ IV+L L G+G+ L+R Sbjct: 14 LLTACEERSTLHSRLSEQDANEVIAQLADNDIQASKRTEKDGMSVLVAPADLNSAVRVLEAAGLPRRSRASLGDIFRKEGVISTPLEERARYIYALSQELESTLSQIDGVVLARVHVVLPERVAPGEPVQPASASVFIKHTGALDPDSITPRVRNLIASGIPGMADAAHNTSKLSVVFVPTLPYQERR-EMAPFGPFLMKAEDVGYWRTVMVVTGIVLLSLLLGVGYGLYR 243
BLAST of mRNA_E-siliculosus-1a_F_contig10128.138.1 vs. uniprot
Match: A0A2P8LBR5_9PSED (Lipoprotein n=6 Tax=Pseudomonas TaxID=286 RepID=A0A2P8LBR5_9PSED) HSP 1 Score: 232 bits (592), Expect = 5.520e-73 Identity = 118/233 (50.64%), Postives = 159/233 (68.24%), Query Frame = 1 Query: 46 ILSGCNGQQSLYDDLSQGSANEVMAELISNGIPVKSRRSDSGFSVLIHQSDTARAVHILSTAGLPREPRADLGSTFEKAGIISTPFEERARYIYALAQEMESTLTQIDGVTQARVQVVLPDRIAPGEPVHPASASVFIKHNAFLTPDAIHPRIRQLVMSSIPGLSQQGGNSSRVSIVFVPTREFADTGPEMTYFGPYLIPRHAANFWKMTLVISSIVVLLLCAGIGWLLWRRR 744 +LSGC L+ ++S+ ANEV+AEL I + G +V + SD +RAV L AGLP+ R+ LG F K G+ISTP EERARYIYAL+QE+ESTL+ IDGV ARV VVLP+R+APGEPV PASASVFIKH+ L PD I+PR+R+LV SSIPG++ N+++++++FVP + + ++TY GP+L+P FW+ +L+ I+ L AGI WL WRRR Sbjct: 16 MLSGCGDSVELHRNISEQEANEVIAELADKQIRAQKVPGKDGVAVRVKASDISRAVRTLDAAGLPKTARSTLGDIFRKEGVISTPLEERARYIYALSQELESTLSNIDGVIVARVHVVLPERVAPGEPVQPASASVFIKHDPRLDPDNINPRVRRLVASSIPGMASAIDNTTKLTVIFVPATAYTEQ-QQLTYLGPFLVPEQDLGFWRASLIAPLIIAL--SAGIAWLFWRRR 245
BLAST of mRNA_E-siliculosus-1a_F_contig10128.138.1 vs. uniprot
Match: A0A4Y9TIY4_PSEFL (Lipoprotein n=5 Tax=Pseudomonas TaxID=286 RepID=A0A4Y9TIY4_PSEFL) HSP 1 Score: 231 bits (589), Expect = 1.520e-72 Identity = 115/232 (49.57%), Postives = 162/232 (69.83%), Query Frame = 1 Query: 46 ILSGCNGQQSLYDDLSQGSANEVMAELISNGIPVKSRRSDSGFSVLIHQSDTARAVHILSTAGLPREPRADLGSTFEKAGIISTPFEERARYIYALAQEMESTLTQIDGVTQARVQVVLPDRIAPGEPVHPASASVFIKHNAFLTPDAIHPRIRQLVMSSIPGLSQQGGNSSRVSIVFVPTREFADTGPEMTYFGPYLIPRHAANFWKMTLVISSIVVLLLCAGIGWLLWRR 741 +L+GC L+ ++S+ ANEV+AEL I + G +V ++ SD +RAV L AGLPR R+ LG F K G+ISTP EERARYIYAL+QE+ESTL+ IDGV ARV VVLP+R+APGEPV PASASVFIKH+ L PD I+PR+R++V SSIPG++ N+ +++++FVP + + ++ YFGP+L+P H FW+ ++++ + ++L AG+GW LWRR Sbjct: 16 MLTGCGESVELHRNISEQEANEVIAELADKQIRAQKIPGKDGVAVRVNASDISRAVRTLDAAGLPRLARSTLGDVFRKEGVISTPLEERARYIYALSQELESTLSNIDGVIVARVHVVLPERVAPGEPVQPASASVFIKHDPRLDPDKINPRVRRMVASSIPGMASALDNTVKLTVIFVPAIAYKEE-QQLVYFGPFLVPEHDLGFWRASVLLPLVALIL--AGVGWRLWRR 244
BLAST of mRNA_E-siliculosus-1a_F_contig10128.138.1 vs. uniprot
Match: A0A1H0GQZ1_9PSED (Lipoprotein n=3 Tax=Pseudomonadaceae TaxID=135621 RepID=A0A1H0GQZ1_9PSED) HSP 1 Score: 231 bits (588), Expect = 1.900e-72 Identity = 123/253 (48.62%), Postives = 168/253 (66.40%), Query Frame = 1 Query: 1 MPRLILYFLLVLTFPILSGCNGQQSLYDDLSQGSANEVMAELISNGIPVKSRRSDSGFSVLIHQSDTARAVHILSTAGLPREPRADLGSTFEKAGIISTPFEERARYIYALAQEMESTLTQIDGVTQARVQVVLPDRIAPGEPVHPASASVFIKHNAFLTPDAIHPRIRQLVMSSIPGLSQQGGNSSRVSIVFVPTREFADTGPEMTYFGPYLIPRHAANFWKMTLVISSIVVLLLCAGIGWLLWRRRMSAAA 759 M R + LL+L LSGC L+ ++S+ ANE++AEL I + + G +V + SD RAV L GLP+ R+ LG F K G+ISTP EERARYIYAL+QE+E+TL+ IDGV ARV VVLP+RIAPGEPV PASASVFIKH+ L PD I+ R+R++V SS+PG++ N+ ++++VFVP + + ++TY GP+LIP FW+++L++ +VLL GIGWLLWRR+ A A Sbjct: 1 MYRRLSTLLLILLALTLSGCGESVELHRNISEQEANEIIAELADKQIRAQKIQGKDGVAVRVKASDINRAVRTLDAVGLPKVTRSTLGEIFRKEGVISTPLEERARYIYALSQELEATLSNIDGVVVARVHVVLPERIAPGEPVQPASASVFIKHDPRLDPDNINARVRRMVASSLPGMASAIDNTVKLTVVFVPATPYQEK-QQLTYLGPFLIPEQDLGFWRLSLLMP--LVLLFTGGIGWLLWRRKRLAPA 250
BLAST of mRNA_E-siliculosus-1a_F_contig10128.138.1 vs. uniprot
Match: A0A0W0MRL5_PSEMA (Lipoprotein n=4 Tax=Pseudomonas TaxID=286 RepID=A0A0W0MRL5_PSEMA) HSP 1 Score: 231 bits (588), Expect = 2.220e-72 Identity = 122/253 (48.22%), Postives = 169/253 (66.80%), Query Frame = 1 Query: 1 MPRLILYFLLVLTFPILSGCNGQQSLYDDLSQGSANEVMAELISNGIPVKSRRSDSGFSVLIHQSDTARAVHILSTAGLPREPRADLGSTFEKAGIISTPFEERARYIYALAQEMESTLTQIDGVTQARVQVVLPDRIAPGEPVHPASASVFIKHNAFLTPDAIHPRIRQLVMSSIPGLSQQGGNSSRVSIVFVPTREFADTGPEMTYFGPYLIPRHAANFWKMTLVISSIVVLLLCAGIGWLLWRRRMSAAA 759 M R ++ L + T IL+GC L+ ++S+ ANEV+AEL I + G +V + SD +RAV L AGLPR R+ LG F K G+ISTP EERARYIYAL+QE+ESTL+ IDGV ARV VVLP+RIAPGEPV PASASVFIKH+ L PD I+PR+R++V SSIPG++ N++++++VFVP + + ++ + GP+L+P FW+M+ I + +V L+ GI W +WRRR + A+ Sbjct: 1 MYRRLISLLFISTTLILTGCGDSVELHRNISEPEANEVIAELADKQIRAQKIPGKDGVAVRVKASDISRAVRTLDAAGLPRLARSTLGDIFRKEGVISTPLEERARYIYALSQELESTLSNIDGVIVARVHVVLPERIAPGEPVQPASASVFIKHDPRLEPDKINPRVRRMVASSIPGMASAVDNTAKLTVVFVPATAYIEQ-QKLIHLGPFLVPEQDVGFWRMS--IFAPLVALILGGIAWQVWRRRQTRAS 250
BLAST of mRNA_E-siliculosus-1a_F_contig10128.138.1 vs. uniprot
Match: J2E828_PSEFL (Lipoprotein n=3 Tax=Pseudomonas TaxID=286 RepID=J2E828_PSEFL) HSP 1 Score: 230 bits (586), Expect = 1.210e-71 Identity = 121/235 (51.49%), Postives = 160/235 (68.09%), Query Frame = 1 Query: 46 ILSGCNGQQSLYDDLSQGSANEVMAELISNGIPVKSRRSDSGFSVLIHQSDTARAVHILSTAGLPREPRADLGSTFEKAGIISTPFEERARYIYALAQEMESTLTQIDGVTQARVQVVLPDRIAPGEPVHPASASVFIKHNAFLTPDAIHPRIRQLVMSSIPGLSQQGGNSSRVSIVFVPTREFADTGPEMTYFGPYLIPRHAANFWKMTLVISSIVVL-LLCAGIGWL--LWRR 741 +L+GC+ + +L+ LS+ ANEV+AEL I + G +VL+ +D AVH+L AGLPR R+ LG F K G+ISTP EERARYIYAL+QE+ESTL+QIDGV ARV VVLP+R+APGEPV PASASVFIKH L PD+I PR+R LV S IPG++ N+S++S+VFVPT + + +M YFGP+L+ +W+ V +SI +L LL G+ L LWR+ Sbjct: 12 LLNGCDERAALHSRLSEQDANEVIAELADKSIEASKQADKEGLTVLVEPADMNSAVHVLEAAGLPRRSRSSLGEIFRKEGVISTPMEERARYIYALSQELESTLSQIDGVVLARVHVVLPERVAPGEPVQPASASVFIKHTRALDPDSITPRVRNLVASGIPGMADAAQNASKLSVVFVPTAPYQERR-KMAYFGPFLMQADDVGYWRAMTVAASITLLALLLGGVFGLYRLWRK 245
BLAST of mRNA_E-siliculosus-1a_F_contig10128.138.1 vs. uniprot
Match: UPI001905DB92 (type III secretion inner membrane ring lipoprotein SctJ n=1 Tax=unclassified Pseudomonas TaxID=196821 RepID=UPI001905DB92) HSP 1 Score: 229 bits (585), Expect = 1.430e-71 Identity = 114/235 (48.51%), Postives = 163/235 (69.36%), Query Frame = 1 Query: 46 ILSGCNGQQSLYDDLSQGSANEVMAELISNGIPVKSRRSDSGFSVLIHQSDTARAVHILSTAGLPREPRADLGSTFEKAGIISTPFEERARYIYALAQEMESTLTQIDGVTQARVQVVLPDRIAPGEPVHPASASVFIKHNAFLTPDAIHPRIRQLVMSSIPGLSQQGGNSSRVSIVFVPTREFADTGPEMTYFGPYLIPRHAANFWKMTLVISSIVVLLLCAGIGW---LLWRR 741 +L+ C + +L+ LS+ +ANEV+A L I + G SVL+ ++D AVH+L AGLPR R+ LG F K G+ISTP EERARY+YAL+QE+ESTL+QIDGV ARV VVLP+R+APGEPV PASASVFIKH + L PD+I PR+R ++ S IPG++ NSS++S+VFVPT + + ++ +FGP+L+ +W+ ++++S++VL L G+G+ LWR+ Sbjct: 14 LLTACEERSALHSRLSEQAANEVIAALADENIQASKQVDKDGLSVLVARADLNSAVHVLEAAGLPRRSRSSLGDIFRKEGVISTPLEERARYLYALSQELESTLSQIDGVVLARVHVVLPERVAPGEPVQPASASVFIKHTSALDPDSITPRVRSMIASGIPGMADAPSNSSKLSVVFVPTAPYQERR-QLAHFGPFLMQADELAYWRTVILVASVLVLSLLLGLGYGIYRLWRK 247
BLAST of mRNA_E-siliculosus-1a_F_contig10128.138.1 vs. uniprot
Match: A0A0X1T5D8_PSEAA (Lipoprotein n=2 Tax=Pseudomonas agarici TaxID=46677 RepID=A0A0X1T5D8_PSEAA) HSP 1 Score: 228 bits (581), Expect = 3.070e-71 Identity = 123/244 (50.41%), Postives = 161/244 (65.98%), Query Frame = 1 Query: 25 LLVLTFPILSGCNGQQSLYDDLSQGSANEVMAELISNGIPVKSRRSDSGFSVLIHQSDTARAVHILSTAGLPREPRADLGSTFEKAGIISTPFEERARYIYALAQEMESTLTQIDGVTQARVQVVLPDRIAPGEPVHPASASVFIKHNAFLTPDAIHPRIRQLVMSSIPGLSQQGGNSSRVSIVFVPTREFADTGPEMTYFGPYLIPRHAANFWKMTLVISSIVVLLLCAGIGWLL---WRRRM 747 +L+L +L+GC+ + L+ LS+ ANEV+A+L I + G +V++ + RAV IL AGLPR R LG F+K G+ISTP EERARYIYAL+QE+ESTL+QIDGV ARV VVLP+RIAPGEPV PASA+VFIKH A L PD++ RI+Q+V SSIPG+SQ+ NS + +IVFVP EF D ++ FGP+L+ FW M L+ S + LLL I L WR+ + Sbjct: 7 ILLLCLTLLAGCSDESKLFGALSEQDANEVIAQLADQHIEAHKQSEKLGVTVIVPSHEINRAVRILDAAGLPRRTRTSLGEIFKKEGVISTPLEERARYIYALSQELESTLSQIDGVVVARVHVVLPERIAPGEPVQPASAAVFIKHTAVLDPDSVRGRIQQMVASSIPGMSQEALNSKKFAIVFVPAVEFEDK-QKLVQFGPFLVDSRDQGFWNMALIASLVGALLLVVLIALALRADWRQAL 249 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10128.138.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10128.138.1 >prot_E-siliculosus-1a_F_contig10128.138.1 ID=prot_E-siliculosus-1a_F_contig10128.138.1|Name=mRNA_E-siliculosus-1a_F_contig10128.138.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=253bp MPRLILYFLLVLTFPILSGCNGQQSLYDDLSQGSANEVMAELISNGIPVKback to top mRNA from alignment at E-siliculosus-1a_F_contig10128:1921..2679+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig10128.138.1 ID=mRNA_E-siliculosus-1a_F_contig10128.138.1|Name=mRNA_E-siliculosus-1a_F_contig10128.138.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=759bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10128:1921..2679+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10128:1921..2679+ >mRNA_E-siliculosus-1a_F_contig10128.138.1 ID=mRNA_E-siliculosus-1a_F_contig10128.138.1|Name=mRNA_E-siliculosus-1a_F_contig10128.138.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1518bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10128:1921..2679+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |