mRNA_E-siliculosus-1a_F_contig10120.134.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10120.134.1 vs. uniprot
Match: A0A6H5LLH5_9PHAE (RF_PROK_I domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LLH5_9PHAE) HSP 1 Score: 382 bits (982), Expect = 3.580e-127 Identity = 192/196 (97.96%), Postives = 195/196 (99.49%), Query Frame = 1 Query: 1 GKYDNCGCRLTIMAGAGGTEAQDWAEMLQRMYIRFFQRRGFKYKMVEEESGEVAGIKSCEMQVEGDFAYGYLAGEKGTHRLVRQSPFNAQAKRQTSFAGVESFPIIEQDDLSDLVVPEGELEVSTMRSGGSGGQNVNKVETGVRMKHIPTGIAVRCTQERSQMLNKELALNMLKEKLVVVMQEQQTKDLAEIRCEV 588 GKYDNCGCRLTIMAGAGGTEAQDWAEMLQRMYIRFFQRRGFKYK+VEEESGEVAGIKSCEMQVEGDFAYGYLAGEKGTHRLVRQSPFNAQAKRQTSFAGVESFPIIEQDDLSDLVVPEGELEVSTMRSGGSGGQNVNKVETGVRMKHIPTGIAVRCTQERSQMLNKELALNMLKEKLVVVMQEQQTKDLAEIR ++ Sbjct: 207 GKYDNCGCRLTIMAGAGGTEAQDWAEMLQRMYIRFFQRRGFKYKIVEEESGEVAGIKSCEMQVEGDFAYGYLAGEKGTHRLVRQSPFNAQAKRQTSFAGVESFPIIEQDDLSDLVVPEGELEVSTMRSGGSGGQNVNKVETGVRMKHIPTGIAVRCTQERSQMLNKELALNMLKEKLVVVMQEQQTKDLAEIRGDM 402
BLAST of mRNA_E-siliculosus-1a_F_contig10120.134.1 vs. uniprot
Match: D7FJS9_ECTSI (Peptide chain release factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJS9_ECTSI) HSP 1 Score: 383 bits (983), Expect = 1.820e-123 Identity = 192/196 (97.96%), Postives = 195/196 (99.49%), Query Frame = 1 Query: 1 GKYDNCGCRLTIMAGAGGTEAQDWAEMLQRMYIRFFQRRGFKYKMVEEESGEVAGIKSCEMQVEGDFAYGYLAGEKGTHRLVRQSPFNAQAKRQTSFAGVESFPIIEQDDLSDLVVPEGELEVSTMRSGGSGGQNVNKVETGVRMKHIPTGIAVRCTQERSQMLNKELALNMLKEKLVVVMQEQQTKDLAEIRCEV 588 GKYDNCGCRLTIMAGAGGTEAQDWAEMLQRMYIRFFQRRGFKYKMVEEESGEVAGIKSCEMQVEGDFAYGYLAGEKGTHRLVRQSPFNAQAKRQTSFAGVESFPIIEQDDLSDLVVPEGELEVSTMRSGGSGGQNVNKVETGVRMKHIPTGIAVRCTQERSQMLNKELALNMLKEKLVVVMQEQQT+DLAEIR ++ Sbjct: 209 GKYDNCGCRLTIMAGAGGTEAQDWAEMLQRMYIRFFQRRGFKYKMVEEESGEVAGIKSCEMQVEGDFAYGYLAGEKGTHRLVRQSPFNAQAKRQTSFAGVESFPIIEQDDLSDLVVPEGELEVSTMRSGGSGGQNVNKVETGVRMKHIPTGIAVRCTQERSQMLNKELALNMLKEKLVVVMQEQQTRDLAEIRGDM 404
BLAST of mRNA_E-siliculosus-1a_F_contig10120.134.1 vs. uniprot
Match: A0A835Z7S5_9STRA (RF_PROK_I domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7S5_9STRA) HSP 1 Score: 307 bits (787), Expect = 2.600e-99 Identity = 146/196 (74.49%), Postives = 174/196 (88.78%), Query Frame = 1 Query: 1 GKYDNCGCRLTIMAGAGGTEAQDWAEMLQRMYIRFFQRRGFKYKMVEEESGEVAGIKSCEMQVEGDFAYGYLAGEKGTHRLVRQSPFNAQAKRQTSFAGVESFPIIEQDDLSDLVVPEGELEVSTMRSGGSGGQNVNKVETGVRMKHIPTGIAVRCTQERSQMLNKELALNMLKEKLVVVMQEQQTKDLAEIRCEV 588 GK+DN G +LTI AGAGGTEAQDWA MLQRMY R+FQR+GF YK++EEE GEVAGIKSC + VEG YG LAGEKGTHRLVRQSPFNAQAKRQTSFAGVE+FP++E +DL D+ +P+G+LE++TMRSGG GGQNVNKVETGVRM+HIPTGIAVRCTQERSQ++NK LAL M+KE+L+VVMQEQQ ++A+IR ++ Sbjct: 103 GKFDNAGTQLTIQAGAGGTEAQDWALMLQRMYTRYFQRKGFSYKLIEEEPGEVAGIKSCRIDVEGPLCYGLLAGEKGTHRLVRQSPFNAQAKRQTSFAGVETFPVLELEDLDDVHIPDGDLEITTMRSGGKGGQNVNKVETGVRMRHIPTGIAVRCTQERSQLMNKALALKMIKERLLVVMQEQQAAEVAQIRGDM 298
BLAST of mRNA_E-siliculosus-1a_F_contig10120.134.1 vs. uniprot
Match: A0A7S3UT02_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UT02_HETAK) HSP 1 Score: 270 bits (691), Expect = 1.700e-85 Identity = 132/193 (68.39%), Postives = 160/193 (82.90%), Query Frame = 1 Query: 1 GKYDNCGCRLTIMAGAGGTEAQDWAEMLQRMYIRFFQRRGFKYKMVEEESGEVAGIKSCEMQVEGDFAYGYLAGEKGTHRLVRQSPFNAQAKRQTSFAGVESFPIIEQDDLSDLVVPEGELEVSTMRSGGSGGQNVNKVETGVRMKHIPTGIAVRCTQERSQMLNKELALNMLKEKLVVVMQEQQTKDLAEIR 579 G YD+ G R+TI AGAGGT+AQDWAEML RMY R+ + +GF+ + +EE GEVAGIKS +++EG +A+G L GEKGTHRLVR SPFNA KRQTSFA VE+ PI+E DDL D +P+ ELE++TMRSGG GGQNVNKVET VR++H+PTG+AVRC+QERSQ NK+LAL MLKEKL+VVM+EQQ KDLAEIR Sbjct: 62 GSYDDKGVRMTIQAGAGGTDAQDWAEMLLRMYRRYSEIKGFQVRTIEEMPGEVAGIKSAILEIEGPYAFGNLIGEKGTHRLVRLSPFNANNKRQTSFASVETIPIVEMDDLRDFEIPDAELEITTMRSGGKGGQNVNKVETAVRIRHLPTGLAVRCSQERSQGRNKDLALKMLKEKLLVVMEEQQAKDLAEIR 254
BLAST of mRNA_E-siliculosus-1a_F_contig10120.134.1 vs. uniprot
Match: A0A7S2UWG0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWG0_9STRA) HSP 1 Score: 275 bits (702), Expect = 2.640e-85 Identity = 129/196 (65.82%), Postives = 163/196 (83.16%), Query Frame = 1 Query: 1 GKYDNCGCRLTIMAGAGGTEAQDWAEMLQRMYIRFFQRRGFKYKMVEEESGEVAGIKSCEMQVEGDFAYGYLAGEKGTHRLVRQSPFNAQAKRQTSFAGVESFPIIEQDDLSDLVVPEGELEVSTMRSGGSGGQNVNKVETGVRMKHIPTGIAVRCTQERSQMLNKELALNMLKEKLVVVMQEQQTKDLAEIRCEV 588 G YDNC CRLTI AGAGGT+AQDWA ML RMY R+ +R+G++ +++E GE AGIKS E+++ G FAYG LAGEKGTHRLVR SPFN+ KRQTSFAGVE+ PI+EQDDL +PE +LEV+TMR+GG GGQNVNKVET VRMKH+PTG++V+CTQER+Q +N+ LAL LKEK++V+M+EQQ K+LA+IR ++ Sbjct: 206 GPYDNCPCRLTIQAGAGGTDAQDWAAMLLRMYRRYAERQGYQVTLIDEMEGEEAGIKSAELEITGPFAYGRLAGEKGTHRLVRLSPFNSSNKRQTSFAGVETIPIVEQDDLGKFEIPEADLEVTTMRAGGKGGQNVNKVETAVRMKHLPTGLSVKCTQERTQTMNRALALKALKEKILVIMEEQQAKELAQIRGDM 401
BLAST of mRNA_E-siliculosus-1a_F_contig10120.134.1 vs. uniprot
Match: A0A0G4ETN2_VITBC (RF_PROK_I domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4ETN2_VITBC) HSP 1 Score: 263 bits (673), Expect = 7.790e-81 Identity = 125/198 (63.13%), Postives = 163/198 (82.32%), Query Frame = 1 Query: 1 GKYDNCGCRLTIMAGAGGTEAQDWAEMLQRMYIRFFQRRGFKYKMVEEESGEVAGIKSCEMQVEGDFAYGYLAGEKGTHRLVRQSPFNAQAKRQTSFAGVESFPIIEQDDLSDLVVPEGELEVSTMRSGGSGGQNVNKVETGVRMKHIPTGIAVRCTQERSQMLNKELALNMLKEKLVVVMQEQQTKDLAEIRCEVGQ 594 G YD GCRL + AGAGGTE+ DWA+ML RMY+RF QR+G++ ++V+ GE AGIKS E+++EG++AYG L+GEKGTHRLVR SPFNAQ KRQTSFAGVE+ PI+ +D+ D+ + + +LEV+TMRSGG GGQNVNKVET VR+ HIPT I V+CTQERSQ+ NKE+AL MLKE+L+V+ +EQ+ ++LAEIR ++ Q Sbjct: 203 GPYDRVGCRLYVTAGAGGTESCDWADMLLRMYLRFAQRKGWRARVVDRSDGEEAGIKSAEVEIEGEYAYGLLSGEKGTHRLVRISPFNAQGKRQTSFAGVETMPILPDEDVRDITIDDRDLEVTTMRSGGKGGQNVNKVETAVRILHIPTNIMVKCTQERSQLKNKEIALKMLKERLLVIKEEQRVQELAEIRGDMVQ 400
BLAST of mRNA_E-siliculosus-1a_F_contig10120.134.1 vs. uniprot
Match: A0A7S3UET5_9CHLO (Hypothetical protein n=1 Tax=Picocystis salinarum TaxID=88271 RepID=A0A7S3UET5_9CHLO) HSP 1 Score: 260 bits (664), Expect = 5.070e-80 Identity = 128/205 (62.44%), Postives = 162/205 (79.02%), Query Frame = 1 Query: 1 GKYDNCGCRLTIMAGAGGTEAQDWAEMLQRMYIRFFQRRGFKYKMVEEESGEVAGIKSCEMQVEGDFAYGYLAGEKGTHRLVRQSPFNAQAKRQTSFAGVESFPIIEQDDLSDLVVPEGELEVSTMRSGGSGGQNVNKVETGVRMKHIPTGIAVRCTQERSQMLNKELALNMLKEKLVVVMQEQQTKDLAEIR-----CEVGQKL 600 G YD CG RLTI AGAGGT+AQDWAEML+RMY+R+ ++RG+K K V+ GE AG+KS ++++GD AYG L+ E GTHRLVRQSPFN + RQTSFAGVE P+++ D DL PE +LE++TMRSGG+GGQNVNKVET VR+KHIPTGIAV+CTQERSQ+ NK LA+ +LK KL+V+ Q+QQ K++AEIR E GQ++ Sbjct: 168 GPYDRCGARLTITAGAGGTDAQDWAEMLERMYLRWCEKRGYKVKNVDRSPGEEAGLKSTTLEIDGDLAYGLLSSENGTHRLVRQSPFNTKGARQTSFAGVEIMPLLDDDVQVDL--PEADLEITTMRSGGAGGQNVNKVETAVRIKHIPTGIAVKCTQERSQVQNKALAMQILKAKLLVIAQQQQAKEIAEIRGDMVKAEWGQQI 370
BLAST of mRNA_E-siliculosus-1a_F_contig10120.134.1 vs. uniprot
Match: A0A7S4LGK2_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4LGK2_9EUGL) HSP 1 Score: 258 bits (659), Expect = 1.320e-78 Identity = 133/226 (58.85%), Postives = 174/226 (76.99%), Query Frame = 1 Query: 1 GKYDNCGCRLTIMAGAGGTEAQDWAEMLQRMYIRFFQRRGFKYKMVEEESGEVAGIKSCEMQVEGDFAYGYLAGEKGTHRLVRQSPFNAQAKRQTSFAGVESFPIIEQDDLSDLVVPEGELEVSTMRSGGSGGQNVNKVETGVRMKHIPTGIAVRCTQERSQMLNKELALNMLKEKLVVVMQEQQTKDLAEIRCEVGQKLGVD*GRA--HGANRPFILVWRGRENH 672 G YD G LTIM+GAGG EAQDWA ML RMY R+ +R+G+ +++V+E+S +V GIKS E+++ G+++YG LA EKGTHRLVR SP+NAQAKRQTSFA VE PI+E+++L DL +P+ +LEV+TMRSGG+GGQNVNKVETGVRMKHIPTGI V+CT ERSQ++NK+LAL LKE+L+ V QEQ+ +LAEIR G ++ + G+ + P+ LV R H Sbjct: 227 GPYDKGGALLTIMSGAGGVEAQDWANMLYRMYRRYAERKGWTFRVVDEQSADV-GIKSVEVEIVGEYSYGMLAPEKGTHRLVRISPYNAQAKRQTSFAAVEVMPIVEEENLKDLHIPDSDLEVTTMRSGGAGGQNVNKVETGVRMKHIPTGITVKCTIERSQLMNKDLALKRLKERLLAVQQEQRVAELAEIR---GDQVEANFGQQIRNYVFAPYKLVKDARTAH 448
BLAST of mRNA_E-siliculosus-1a_F_contig10120.134.1 vs. uniprot
Match: A0A7S1T7C5_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1T7C5_9RHOD) HSP 1 Score: 255 bits (651), Expect = 2.320e-78 Identity = 120/196 (61.22%), Postives = 160/196 (81.63%), Query Frame = 1 Query: 1 GKYDNCGCRLTIMAGAGGTEAQDWAEMLQRMYIRFFQRRGFKYKMVEEESGEVAGIKSCEMQVEGDFAYGYLAGEKGTHRLVRQSPFNAQAKRQTSFAGVESFPIIEQDDLSDLVVPEGELEVSTMRSGGSGGQNVNKVETGVRMKHIPTGIAVRCTQERSQMLNKELALNMLKEKLVVVMQEQQTKDLAEIRCEV 588 G YD CG +T++AGAGG +AQDWAEML+RMYIR+ +R+G++ ++VEE GE AGIKS +++ G++AYGY++ EKGTHRLVR SPFNAQ KRQTSFAGVE P++E D ++++ VPE ++E+STMRSGG GGQNVNKVET VR+ H PTG++V+CT R+Q NKE AL +LK KL+V+ +EQ+ K+LAEIR +V Sbjct: 147 GDYDRCGAVVTVLAGAGGVDAQDWAEMLKRMYIRWAERQGYRVEVVEESEGEEAGIKSVTLEISGEYAYGYVSAEKGTHRLVRISPFNAQGKRQTSFAGVEVMPLLEDDQVNNVEVPEKDIEISTMRSGGKGGQNVNKVETAVRVVHTPTGLSVKCTTARTQGENKEKALALLKSKLLVIAREQRVKELAEIRGDV 342
BLAST of mRNA_E-siliculosus-1a_F_contig10120.134.1 vs. uniprot
Match: A0A7S4DMM9_9EUKA (Hypothetical protein n=2 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DMM9_9EUKA) HSP 1 Score: 258 bits (658), Expect = 1.110e-77 Identity = 124/193 (64.25%), Postives = 156/193 (80.83%), Query Frame = 1 Query: 1 GKYDNCGCRLTIMAGAGGTEAQDWAEMLQRMYIRFFQRRGFKYKMVEEESGEVAGIKSCEMQVEGDFAYGYLAGEKGTHRLVRQSPFNAQAKRQTSFAGVESFPIIEQDDLSDLVVPEGELEVSTMRSGGSGGQNVNKVETGVRMKHIPTGIAVRCTQERSQMLNKELALNMLKEKLVVVMQEQQTKDLAEIR 579 G YD G LTI++GAGGTEAQDWA ML RMY RF + G++ +VE GE AG KS ++++GDFAYGYL GEKGTHRLVR SPFN+ KRQTSFA VE P +E+D+L ++ +PE +LEV+TMRSGG+GGQNVNKVETGVRMKHIPTGIAVRCTQER+Q++NK++AL M+K KL+V+ +EQ+ L+EI+ Sbjct: 298 GDYDESGAVLTILSGAGGTEAQDWASMLVRMYQRFCDKMGYQASLVEVNPGEEAGYKSATIRIQGDFAYGYLKGEKGTHRLVRLSPFNSLNKRQTSFAKVEVMPTLEEDELEEITIPESDLEVTTMRSGGAGGQNVNKVETGVRMKHIPTGIAVRCTQERTQLMNKKIALEMIKGKLMVIKEEQKAAKLSEIK 490 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10120.134.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10120.134.1 >prot_E-siliculosus-1a_F_contig10120.134.1 ID=prot_E-siliculosus-1a_F_contig10120.134.1|Name=mRNA_E-siliculosus-1a_F_contig10120.134.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=192bp MAGAGGTEAQDWAEMLQRMYIRFFQRRGFKYKMVEEESGEVAGIKSCEMQback to top mRNA from alignment at E-siliculosus-1a_F_contig10120:541..2603+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig10120.134.1 ID=mRNA_E-siliculosus-1a_F_contig10120.134.1|Name=mRNA_E-siliculosus-1a_F_contig10120.134.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2063bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10120:541..2603+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10120:541..2603+ >mRNA_E-siliculosus-1a_F_contig10120.134.1 ID=mRNA_E-siliculosus-1a_F_contig10120.134.1|Name=mRNA_E-siliculosus-1a_F_contig10120.134.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1152bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10120:541..2603+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |