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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1011.127.1 vs. uniprot
Match: D7FNM2_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNM2_ECTSI) HSP 1 Score: 333 bits (853), Expect = 1.720e-110 Identity = 228/269 (84.76%), Postives = 231/269 (85.87%), Query Frame = 1 Query: 1 INWVSPEGDTPLLAACRNGHLQTALCLLSHGASANQVDKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFESQGPHVPDGMLQRLDTIAQRSGRRTHHDPGISTAATNTSTFTTSSGRGAQDGGGLVSSRRSNTVLDSDTLSARATGGGVPENISGDGRPGWRWRSNTGRIEYNVPLTDDAHDGAADVGPAAISTGDGGRDDAQREERGGGEGRTTFPSISRKAGSTSADSRSSSRVHSAGRAASSSGDGVRSSDDEHDEL 807
INWVSPEGDTPLL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFESQGPHVPDGMLQRLDTIAQRSGRRTHH GISTAA NTSTFTTSSGR AQDGGG +SSRRSNTVLDSDTLSARATGGGVPEN GDGR GWRWRSNTGRIE++VPLTDDAHDGAA VGPAAISTGDGGRDDAQREERGG EGRTTFPSISRKAGSTSADSR SSRVHSAGRAASSSGDGVRSSDDEHDE
Sbjct: 44 INWVSPEGDTPLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFESQGPHVPDGMLQRLDTIAQRSGRRTHHHLGISTAAINTSTFTTSSGRSAQDGGGSMSSRRSNTVLDSDTLSARATGGGVPENNIGDGRSGWRWRSNTGRIEHHVPLTDDAHDGAAGVGPAAISTGDGGRDDAQREERGGVEGRTTFPSISRKAGSTSADSRPSSRVHSAGRAASSSGDGVRSSDDEHDEF 312
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 0 |
| Stop | 0 |
| Cds size | 996 |
| Model size | 998 |
| Exons | 4 |
| Ec32 ortholog | Ec-01_004960.1 |
| Ec32 ortholog description | Ankyrin repeat-containing domain |
| Hectar predicted targeting category | other localisation |
| BRITE | ko00000,ko01009,ko03400 |
| Best eggNOG OG | NA|NA|NA |
| Best tax level | Eukaryota |
| COG Functional cat. | L |
| EggNOG OGs | COG0666@1,KOG0508@2759 |
| EggNOG free text desc. | EP4 subtype prostaglandin E2 receptor binding |
| KEGG ko | ko:K15502 |
| Seed eggNOG ortholog | 2880.D7FNM2 |
| Seed ortholog evalue | 7.5e-90 |
| Seed ortholog score | 337.4 |
| Taxonomic scope | Eukaryota |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1011.127.1 >prot_E-siliculosus-1a_F_contig1011.127.1 ID=prot_E-siliculosus-1a_F_contig1011.127.1|Name=mRNA_E-siliculosus-1a_F_contig1011.127.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=332bp
INWVSPEGDTPLLAACRNGHLQTALCLLSHGASANQVDKDGRTALHVSCR
HGKEAVAEALILRGADVSARDHGGATAFESQGPHVPDGMLQRLDTIAQRS
GRRTHHDPGISTAATNTSTFTTSSGRGAQDGGGLVSSRRSNTVLDSDTLS
ARATGGGVPENISGDGRPGWRWRSNTGRIEYNVPLTDDAHDGAADVGPAA
ISTGDGGRDDAQREERGGGEGRTTFPSISRKAGSTSADSRSSSRVHSAGR
AASSSGDGVRSSDDEHDELLHEDETRRRFLSSAYRGPGVRQRGSLPIRNR
STGTGDEMSESMQLISAGEPVPHAVRTRQYDI back to topmRNA from alignment at E-siliculosus-1a_F_contig1011:25380..27462+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1011.127.1 ID=mRNA_E-siliculosus-1a_F_contig1011.127.1|Name=mRNA_E-siliculosus-1a_F_contig1011.127.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2083bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1011:25380..27462+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATAAACTGGGTGAGTCCGGAAGGAGACACTCCGCTCCTAGCAGCCTGTCG
CAACGGGCACCTTCAAACTGCCCTGTGTCTGCTCAGTCACGGCGCCTCGG
CAAACCAGGTGGACAAGGACGGGCGAACTGCCCTCCACGTCTCTTGCCGC
CATGGCAAGGAAGCGGTTGCCGAGGCATTGATCCTGAGGGGAGCTGATGT
ATCCGCCAGGGACCACGGCGGTAAGCAACTCTCGTGGTCACGACTGGAAC
ACGACCCTTGCTGTATCACATCGCTCTGTATCTACTCGAGAAAGGGATGA
GCGTACCGAAAGGGGTATAAATACAAGGGGGGCCGGGTTGCATGATCTAT
TGCCGTGATTTTGTTCTTATCAGCGTTGATGGCATAGGCATCGCAGGAGG
AGGGAGAGGCGTGGGCCCGCGCGGGAGGATGAGAGGGCTGAATGGATTAG
GCTTGTGGTAGTCGTGTCTCTACCCGTCGTCGATGCTCGAAAACCAAACC
GCGAACCATTTCAATTGCATTGTACGTACCCTATCAAACCAGGTGCGACG
GCATTCGAGAGTCAAGGGCCGCACGTCCCGGATGGTATGCTTCAACGCCT
CGACACCATCGCCCAGCGCAGCGGTAGGCGAACCCACCACGACCCCGGCA
TAAGCACTGCAGCTACCAACACCAGCACATTCACCACCTCTTCTGGCAGG
GGTGCTCAAGATGGCGGTGGATTAGTGTCAAGCAGGCGCAGCAACACCGT
ACTAGATAGTGACACGCTCAGCGCTCGCGCCACCGGCGGGGGGGTGCCAG
AAAACATTAGCGGTGACGGCAGGCCGGGATGGCGCTGGCGGAGTAACACC
GGTAGGATCGAATACAACGTTCCCCTTACGGACGACGCCCATGATGGTGC
CGCTGATGTTGGCCCGGCAGCGATTTCGACGGGTGACGGTGGCAGGTAGG
ATATCGGCGCTACGACAGTTAATCGTTCGCAATTTATGCTACCCTACGGT
ATTAGCGAGAACGGTGGTTCACAAGACTTTCACGGGGAAGACAGGGCACG
ACACTAAGATGTACCTGGCATTTGCTTTAGGGGGAGCTGGGTTCACTTTT
TGTGTACGGACAGCGCACAAACGTCCTAAGAGTGGGCCTGTAGGTTTCCT
ATGGTCCACGGAATACGACCCAATGCCATCCGCGTGTCTCTCCGTGGTAT
ATCGTGAGATCGACGTCTTGATACCGTGACGTTTCGGCTGATCTGTTCCC
AATGCCTTCAGGGATGATGCCCAGAGGGAGGAGAGAGGGGGAGGGGAGGG
AAGGACGACGTTTCCATCCATTTCACGCAAAGCCGGGTCCACCAGTGCCG
ACAGCAGGTCATCGTCGAGGGTCCACAGCGCCGGTCGGGCAGCCTCCTCC
AGCGGCGACGGAGTCCGTTCCAGTGACGACGAACACGATGTGAGTCGAAA
GCCAGTGACGGCACAAGAGACGACCTTGTACATCAGTGGCACTAGGAACA
GCGAAGAGTAGAGACTAGCGACGCAAAACTGTTTGGCGTGAACGCGAAGC
AAAGCACTGCGGCAATGGGAGTTCACGGTATTTGGCTGAGTGGCTGGAGC
GGCGGGAGGGGGGGCGGGGCATGAGGACCACTGTCAGGACGGGAATCCCT
TATCAGACAAGGTGCATATTCAGCGACAATGCCGCGACTCTTGCTTCTAA
AGGTTTAGAAAGCCGTGTGCATACTCTATAACGCATGGAAAAGTTGGTGC
GTTCCTCCCATTGGTTTCGTTTCGGGAGGGCTGGGAAAAGAAGGGAGGGA
ACAGGCTACACCGGTTGCCCAACACACAGACCTCTTCTCCCATAACAATA
AAGGAGCCGGGCTTTTTACGGTTGTTTGCTTCGCACAGGAACTACTCCAC
GAAGACGAAACAAGACGTCGATTTCTCAGCAGCGCCTACCGCGGACCCGG
TGTCAGGCAACGCGGAAGCTTACCTATCAGAAATCGCAGCACAGGAACCG
GCGACGAGATGTCTGAGAGCATGCAGCTCATATCGGCAGGCGAACCCGTT
CCACACGCGGTAAGAACCCGGCAGTACGACATA back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1011:25380..27462+ >mRNA_E-siliculosus-1a_F_contig1011.127.1 ID=mRNA_E-siliculosus-1a_F_contig1011.127.1|Name=mRNA_E-siliculosus-1a_F_contig1011.127.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1992bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1011:25380..27462+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATAAACTGGGTGAGTCCGGAAGGAGACACTCCGCTCCTAGCAGCCTGTCG
CAACGGGCACCTTCAAACTGCCCTGTGTCTGCTCAGTCACGGCGCCTCGG
CAAACCAGGTGGACAAGGACGGGCGAACTGCCCTCCACGTCTCTTGCCGC
CATGGCAAGGAAGCGGTTGCCGAGGCATTGATCCTGAGGGGAGCTGATGT
ATCCGCCAGGGACCACGGCGATAAACTGGGTGAGTCCGGAAGGAGACACT
CCGCTCCTAGCAGCCTGTCGCAACGGGCACCTTCAAACTGCCCTGTGTCT
GCTCAGTCACGGCGCCTCGGCAAACCAGGTGGACAAGGACGGGCGAACTG
CCCTCCACGTCTCTTGCCGCCATGGCAAGGAAGCGGTTGCCGAGGCATTG
ATCCTGAGGGGAGCTGATGTATCCGCCAGGGACCACGGCGGTGCGACGGC
ATTCGAGAGTCAAGGGCCGCACGTCCCGGATGGTATGCTTCAACGCCTCG
ACACCATCGCCCAGCGCAGCGGTAGGCGAACCCACCACGACCCCGGCATA
AGCACTGCAGCTACCAACACCAGCACATTCACCACCTCTTCTGGCAGGGG
TGCTCAAGATGGCGGTGGATTAGTGTCAAGCAGGCGCAGCAACACCGTAC
TAGATAGTGACACGCTCAGCGCTCGCGCCACCGGCGGGGGGGTGCCAGAA
AACATTAGCGGTGACGGCAGGCCGGGATGGCGCTGGCGGAGTAACACCGG
TAGGATCGAATACAACGTTCCCCTTACGGACGACGCCCATGATGGTGCCG
CTGATGTTGGCCCGGCAGCGATTTCGACGGGTGACGGTGGCAGGTGCGAC
GGCATTCGAGAGTCAAGGGCCGCACGTCCCGGATGGTATGCTTCAACGCC
TCGACACCATCGCCCAGCGCAGCGGTAGGCGAACCCACCACGACCCCGGC
ATAAGCACTGCAGCTACCAACACCAGCACATTCACCACCTCTTCTGGCAG
GGGTGCTCAAGATGGCGGTGGATTAGTGTCAAGCAGGCGCAGCAACACCG
TACTAGATAGTGACACGCTCAGCGCTCGCGCCACCGGCGGGGGGGTGCCA
GAAAACATTAGCGGTGACGGCAGGCCGGGATGGCGCTGGCGGAGTAACAC
CGGTAGGATCGAATACAACGTTCCCCTTACGGACGACGCCCATGATGGTG
CCGCTGATGTTGGCCCGGCAGCGATTTCGACGGGTGACGGTGGCAGGGAT
GATGCCCAGAGGGAGGAGAGAGGGGGAGGGGAGGGAAGGACGACGTTTCC
ATCCATTTCACGCAAAGCCGGGTCCACCAGTGCCGACAGCAGGTCATCGT
CGAGGGTCCACAGCGCCGGTCGGGCAGCCTCCTCCAGCGGCGACGGAGTC
CGTTCCAGTGACGACGAACACGATGGATGATGCCCAGAGGGAGGAGAGAG
GGGGAGGGGAGGGAAGGACGACGTTTCCATCCATTTCACGCAAAGCCGGG
TCCACCAGTGCCGACAGCAGGTCATCGTCGAGGGTCCACAGCGCCGGTCG
GGCAGCCTCCTCCAGCGGCGACGGAGTCCGTTCCAGTGACGACGAACACG
ATGAACTACTCCACGAAGACGAAACAAGACGTCGATTTCTCAGCAGCGCC
TACCGCGGACCCGGTGTCAGGCAACGCGGAAGCTTACCTATCAGAAATCG
CAGCACAGGAACCGGCGACGAGATGTCTGAGAGCATGCAGCTCATATCGG
CAGGCGAACCCGTTCCACACGCGGTAAGAACCCGGCAGTACGACATAGAA
CTACTCCACGAAGACGAAACAAGACGTCGATTTCTCAGCAGCGCCTACCG
CGGACCCGGTGTCAGGCAACGCGGAAGCTTACCTATCAGAAATCGCAGCA
CAGGAACCGGCGACGAGATGTCTGAGAGCATGCAGCTCATATCGGCAGGC
GAACCCGTTCCACACGCGGTAAGAACCCGGCAGTACGACATA back to top
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