mRNA_E-siliculosus-1a_F_contig1011.125.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1011.125.1 vs. uniprot
Match: D7FNM3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNM3_ECTSI) HSP 1 Score: 568 bits (1465), Expect = 2.430e-196 Identity = 295/331 (89.12%), Postives = 302/331 (91.24%), Query Frame = 1 Query: 1 MLKSFDVNHQDHKPRTKYFLTTGGRVVRVDHDPDAGNRLIVPTEDELKTILYDQTDARNRGNGHRRRDNIDFVALHANRRPRRKGSKNGVGNNQRTHENNGSPVVVIGEEFPERHAFLSDRPHIRRERVVKSDRCLRLKANRPSPKHHDSGEEDDVSLFLDSFSASEMPGQHPAAAVETAVTRQSPPTSLCPDDGVLEGQARKAEAVVADTTQTTMEMSKPLAKTDLYSILAKAPPAELRSTASHRPVGGIGCSVDPTMSNKAGMKRHKREQGSLRRLASSVVVGGDERPAFEAALRLTPREEVGGYLKRDPLGDEVAELNAKLQESLRRV 993
MLKSFDVNHQDHKPRTKYFLT GGRVVRV+HDPDAGNR IVPTEDELKTILYDQTDARNRGNGHRRRDNIDFVALHANRRPRRKGSKNGV NNQRT+EN+ SPV V GE DRPHIRRER +KSDRCLR KANRPSPKHHDSGEE+DVSLFLDSFSASEMPGQHPAAAV+TAVT QSPPTSLC DDGVLEGQARKAEAVVADTTQTTMEMSKPLAK DLYSILAKAPP RSTASHRPV GIGCSVDPTMSNKAGMKRHKREQGSLRRLASSVVVGGDERPAFE ALRL PREEVGGYLKRDPLGDEVAEL AKLQESLR +
Sbjct: 1 MLKSFDVNHQDHKPRTKYFLTVGGRVVRVNHDPDAGNRQIVPTEDELKTILYDQTDARNRGNGHRRRDNIDFVALHANRRPRRKGSKNGVENNQRTYENSNSPVGVNGE----------DRPHIRRERGIKSDRCLRPKANRPSPKHHDSGEEEDVSLFLDSFSASEMPGQHPAAAVQTAVTLQSPPTSLCLDDGVLEGQARKAEAVVADTTQTTMEMSKPLAKIDLYSILAKAPPVAPRSTASHRPVDGIGCSVDPTMSNKAGMKRHKREQGSLRRLASSVVVGGDERPAFETALRLNPREEVGGYLKRDPLGDEVAELTAKLQESLRSI 321 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1011.125.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 1 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1011.125.1 >prot_E-siliculosus-1a_F_contig1011.125.1 ID=prot_E-siliculosus-1a_F_contig1011.125.1|Name=mRNA_E-siliculosus-1a_F_contig1011.125.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=736bp MLKSFDVNHQDHKPRTKYFLTTGGRVVRVDHDPDAGNRLIVPTEDELKTIback to top mRNA from alignment at E-siliculosus-1a_F_contig1011:18706..23229- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1011.125.1 ID=mRNA_E-siliculosus-1a_F_contig1011.125.1|Name=mRNA_E-siliculosus-1a_F_contig1011.125.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4524bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1011:18706..23229- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1011:18706..23229- >mRNA_E-siliculosus-1a_F_contig1011.125.1 ID=mRNA_E-siliculosus-1a_F_contig1011.125.1|Name=mRNA_E-siliculosus-1a_F_contig1011.125.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=4416bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1011:18706..23229- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |