mRNA_E-siliculosus-1a_F_contig1010.119.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1010.119.1 vs. uniprot
Match: D7G8C2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8C2_ECTSI) HSP 1 Score: 1035 bits (2676), Expect = 0.000e+0 Identity = 552/595 (92.77%), Postives = 563/595 (94.62%), Query Frame = 2 Query: 257 MAAASSSTGTTCTEPEHAGRATEEGLAVMTSRPFSRDVSQEAPLPLGRRLLRAFSQGINPASSIRTLKGLSNTSRSSSGDTENLTPPPARH-VGPNSMLWTLSEASSLGEEAGWETIVEQDGITPAMGLTSFHSEKHGLRLWVQPDSVPVPLSPGRQEASGPIRVRDLVQTVDFEGGELQGVLEVECLPCGRRFDAPLLLDFPVEGRNKEDPIIDPHGRIQYEILIKDPHSERWVRDPESSIPPEIVQDNQGKVYVRAHVRHFSCWGFFFKPLAIGPQLFHEQTIPWVQSKRHQSLIQNNTPRGVDIHIYAMRMSQWSAAVESVKAGAGVEGFQANFEFTGDVRQNVNPAALVPQMVTIPSGHSHWIEVPRVGAGFRSSRKAVVMIVTEFNDENDGKRMRLEAVEHLRSRTMLTVTLRVSGEGKVIGSPVASEAGGILSQLMRAIQNDVNATPNNAPSTAARSRSETNSGVNIGLGAERPGAEQLIGSPAMAESSGDDISPTGAGPADDAAAIAASTTRSAGXXXXXXXXXXXVPAEAAAXXXXXXXXXXX-EDREXXAAKAAVDDPSAGARSDAHPNASPFPATKSAAIVSPVA 2035
MAAASSSTGTTCTEPEH GRATEE A+MTSRPFSRDVSQEAPLPLGRRLLRAFSQGINPASSIRTLKGLSNTSRSSSGDTENLTPPPAR VGPNSMLWTLSEASSLGEEAGWETIVEQDGI PAMGLTSFHSEKHGLRLWVQPDSVPVPLSPGRQEASGPIRVRDLVQTV+FEGGELQG+LEVECLPCGRRFDAPLLLDFPV+GRNKE+PIID HGRIQYEILIKDP SE WVRDPESSIPPEIVQDNQGKVYVRAHVRHFSCWGFFFKPL IGPQLFH+QTIPW QSKRHQSLIQNNTPRGVD+HIYAMRMSQWSAA+ESVKAGAG+EGFQANFEFTGDVRQNVNPAALVPQMVTIPSG+SHWIEVPRVGAGFRSSRKAVVMIVTEFNDENDGKRMRLEAVEHLRSRTMLTVTLRVS EGKVIGSP ASEAGGILSQLMRAIQNDVNATPNNAPSTAARSRSETNSGVNIGLGAERPGAEQ +GSPAMAESSGDDISPTGAGPADDAAAIA STTRSAG VPAEAAAXXXXXXXXXX EDRE AAKAAVDDP AGARSDAHPNASPFPATKSAA VSPVA
Sbjct: 1 MAAASSSTGTTCTEPEH-GRATEEDSAIMTSRPFSRDVSQEAPLPLGRRLLRAFSQGINPASSIRTLKGLSNTSRSSSGDTENLTPPPARSAVGPNSMLWTLSEASSLGEEAGWETIVEQDGIKPAMGLTSFHSEKHGLRLWVQPDSVPVPLSPGRQEASGPIRVRDLVQTVEFEGGELQGILEVECLPCGRRFDAPLLLDFPVDGRNKEEPIIDAHGRIQYEILIKDPRSESWVRDPESSIPPEIVQDNQGKVYVRAHVRHFSCWGFFFKPLDIGPQLFHKQTIPWAQSKRHQSLIQNNTPRGVDVHIYAMRMSQWSAALESVKAGAGIEGFQANFEFTGDVRQNVNPAALVPQMVTIPSGNSHWIEVPRVGAGFRSSRKAVVMIVTEFNDENDGKRMRLEAVEHLRSRTMLTVTLRVSEEGKVIGSPAASEAGGILSQLMRAIQNDVNATPNNAPSTAARSRSETNSGVNIGLGAERPGAEQFVGSPAMAESSGDDISPTGAGPADDAAAIATSTTRSAGDDAAAVTAPTAVPAEAAAXXXXXXXXXXVPEDREPPAAKAAVDDPWAGARSDAHPNASPFPATKSAATVSPVA 594
BLAST of mRNA_E-siliculosus-1a_F_contig1010.119.1 vs. uniprot
Match: A0A6H5JWE2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWE2_9PHAE) HSP 1 Score: 852 bits (2200), Expect = 2.570e-301 Identity = 448/509 (88.02%), Postives = 466/509 (91.55%), Query Frame = 2 Query: 257 MAAASSSTGTTCTEPEHAGRATEEGLAVMTSRPFSRDVSQEAPLPLGRRLLRAFSQGINPASSIRTLKGLSNTSRSSSGDTENLTPPPARH-VGPNSMLWTLSEASSLGEEAGWETIVEQDGITPAMGLTSFHSEKHGLRLWVQPDSVPVPLSPGRQEASGPIRVRDLVQTVDFEGGELQGVLEVECLPCGRRFDAPLLLDFPVEGRNKEDPIIDPHGRIQYEILIKDPHSERWVRDPESSIPPEIVQDNQGKVYVRAHVRHFSCWGFF-FKPLAIGPQLFHEQTIPWVQSKRHQSLIQNNTPRGVDIHIYAMRMSQWSAAVESVKAGAGVEGFQANFEFTGDVRQNVNPAALVPQMVTIPSGHSHWIEVPRVGAGFRSSRKAVVMIVTEFNDENDGKRMRLEAVEHLRSRTMLTVTLRVSGEGKVIGSPVASEAGGILSQLMRAIQNDVNATPNNAPSTAARSRSETNSGVNIGLGAERPGAEQLIGSPAMAESSGDDISPTGAGPAD 1777
MAAASSSTG T T+PEH GRATEE LAVMT RPF+RDVSQE LPLGRRL+RA SQGIN A+SIR LK LS SRSSSGDT NLTP P+ + VGPNS LWTLSEASS+GEEAGWETIVEQDGI PAMGL FHSEKHGLRLWVQPDSVPVPLSPGRQEASGPIRVRDL QTVDFEGG+L GVLEVECLPCGRRFDAPLLLDFPV+GRNKEDPIID HGRIQYEILIKD SERWVRDPESSIP +IVQDNQGKVYVRAH+RHFS WG F KPL GPQLFHEQTIPW+QSKRHQSLIQNNTP GVDIHIYAMR++QWSAAV+SVKAGAG EGFQANFEFTGDV QNVNPAALVPQMVTIP GHSHWIEVPRVGAGFRSSRKAVVMIVTE NDENDGKRMRLEAVEHLRSRTMLTVTLRVS EGKVIGSPVA+EAGGILSQLMRAIQNDVNATPNNAPST RSRSETNSGVNIGLGAE PGAEQ +GSPAMAESSGDDI+PTGAGPAD
Sbjct: 1 MAAASSSTGRTGTQPEH-GRATEEDLAVMTCRPFNRDVSQEESLPLGRRLMRALSQGINSAASIRILKSLSAASRSSSGDTANLTPRPSLNAVGPNSRLWTLSEASSVGEEAGWETIVEQDGIKPAMGLKYFHSEKHGLRLWVQPDSVPVPLSPGRQEASGPIRVRDLDQTVDFEGGKLLGVLEVECLPCGRRFDAPLLLDFPVDGRNKEDPIIDAHGRIQYEILIKDSRSERWVRDPESSIPLQIVQDNQGKVYVRAHIRHFSRWGLFKTKPLVFGPQLFHEQTIPWMQSKRHQSLIQNNTP-GVDIHIYAMRIAQWSAAVKSVKAGAGAEGFQANFEFTGDVHQNVNPAALVPQMVTIPPGHSHWIEVPRVGAGFRSSRKAVVMIVTELNDENDGKRMRLEAVEHLRSRTMLTVTLRVS-EGKVIGSPVAAEAGGILSQLMRAIQNDVNATPNNAPSTV-RSRSETNSGVNIGLGAEHPGAEQFMGSPAMAESSGDDITPTGAGPAD 505
BLAST of mRNA_E-siliculosus-1a_F_contig1010.119.1 vs. uniprot
Match: A0A6H5JA61_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA61_9PHAE) HSP 1 Score: 620 bits (1599), Expect = 6.580e-211 Identity = 340/495 (68.69%), Postives = 382/495 (77.17%), Query Frame = 2 Query: 257 MAAASSSTGTTCTEPEHAGRATEEGL--AVMTSRPFSRDVSQEAPLPLGRRLLRAFSQGINPASSIRTLKGLSNTSRSSSGDTENLTPPPARHVGPNSMLWTLSEASSLGEEA-GWETIVEQDGITPAMGLTSFHSEKHGLRLWVQPDSVPVPLSPGRQEASGPIRVRDLVQTVDFEGGELQGVLEVECLPCGRRFDAPLLLDFPVEGRNKEDPIIDPHGRIQYEILIKDPHSERWVRDPESSIPPEIVQDNQGKVYVRAHVRHFSCWGFF-FKPLAIGPQLFHEQTIPWVQSKRHQSLIQNNTPRGVDIHIYAMRMSQWSAAVESVKAGAGVEGFQANFEFTGDVRQNVNPAALVPQMVTIPSGHSHWIEVPRVGAGFRSSRKAVVMIVTEFNDENDGKRMRLEAVEHLRSRTMLTVTLRVSGEGKVIGSPVASEAGGILSQLMRAIQNDVNATPNNAPSTAARSRSETNSGVNIGLGAERPGAEQLIGSPAMA 1729
MAA++SS T G EEGL A +S ++RDVSQ A PL RRL RA S+G +PA+ +R+ K TS+ S T +L+PP G S + + +ASSLGEE WETIV QDGI P MGLT FHSEKHG RLWVQPDSVPV L P Q+ASGP+RV +L QTV EGG+LQGVLEVECLPC RRFDAPL+LD+ V+ + D IID HGRIQYEILIKD SERWVRDPESSIP +IVQDNQGKVYVRAH+RHFS WG F KPL GP+ +H QTIPW Q KRHQSLI NNTP GV+IHIYAMRMSQWSAA++SVKAGAG E FQANFEF+GDVRQNVNPAALVPQMVTIPSGHSHWIEVPRVG GFRSSRKAVV+IVTE NDENDG R+R+EAVEHLRS+TMLTVTLRVS EGKVIGSPVA+E+GGILSQ+MR IQN VNATPNN PSTAAR+ + T G GAE +GSPA A
Sbjct: 1 MAASASSPNVTDALLLEPGAPFEEGLTPASTSSGDYNRDVSQAAASPLSRRLRRALSRGTDPAARVRSFKLHPATSKPGSAGTSHLSPPSGLSAG-GSNVHSDDDASSLGEEERDWETIVGQDGIKPGMGLTCFHSEKHGFRLWVQPDSVPVRLLPD-QQASGPVRVGELSQTVSLEGGKLQGVLEVECLPCERRFDAPLVLDYLVDEDSHGDRIIDSHGRIQYEILIKDSRSERWVRDPESSIPLQIVQDNQGKVYVRAHIRHFSRWGLFKTKPLVFGPEQYHTQTIPWAQRKRHQSLIHNNTPGGVNIHIYAMRMSQWSAALKSVKAGAGEERFQANFEFSGDVRQNVNPAALVPQMVTIPSGHSHWIEVPRVGTGFRSSRKAVVIIVTESNDENDGTRIRMEAVEHLRSKTMLTVTLRVSEEGKVIGSPVAAESGGILSQVMRVIQNQVNATPNNPPSTAARTNTAT------GAGAE----SLFVGSPATA 483
BLAST of mRNA_E-siliculosus-1a_F_contig1010.119.1 vs. uniprot
Match: D7G8C3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8C3_ECTSI) HSP 1 Score: 617 bits (1590), Expect = 3.760e-209 Identity = 318/458 (69.43%), Postives = 364/458 (79.48%), Query Frame = 2 Query: 302 EHAGRATEEGLAVMT--SRPFSRDVSQEAPLPLGRRLLRAFSQGINPASSIRTLKGLSNTSRSSSGDTENLTPPPARHVGPNSMLWTLSEASSLGEEAGWETIVEQDGITPAMGLTSFHSEKHGLRLWVQPDSVPVPLSPGRQEASGPIRVRDLVQTVDFEGGELQGVLEVECLPCGRRFDAPLLLDFPVEGRNKEDPIIDPHGRIQYEILIKDPHSERWVRDPESSIPPEIVQDNQGKVYVRAHVRHFSCWGFF-FKPLAIGPQLFHEQTIPWVQSKRHQSLIQNNTPRGVDIHIYAMRMSQWSAAVESVKAGAGVEGFQANFEFTGDVRQNVNPAALVPQMVTIPSGHSHWIEVPRVGAGFRSSRKAVVMIVTEFNDENDGKRMRLEAVEHLRSRTMLTVTLRVSGEGKVIGSPVASEAGGILSQLMRAIQNDVNATPNNAPSTAARSRSETNSGV 1666
+H+G EEGLA + S + RDVSQ A PL RRL RA S+GI+PA+ +R+ K T + S DT +++PP G ++++ +S EE WETIV QDGI PAMGLTSFHS+KHG RLWVQPDSVPV Q+ASGP+RV DL QTV EGGELQGVLEVECLPC RRFDAPL+LDF V+G + D IID HGRIQYEILIKD HSERW+RDPE SIP EIVQDNQGKVYVRAHV HFSCWG F KPL GP+ +H QTIPW Q +R+QS+I+NNTP VDIHIYAMRMSQWSAA+ESVKAG G+EGFQ NFEFTGDV +NVNPAALVPQMVTIPSGHSHWIEVPRVGAGFRSSRKAVV+IVTE NDE+ G R+R+EAVEHLRS+TMLTVTLRV EGKVIGSP A+E+GGILSQ+MR IQN VNATP+N PSTAAR+ + T +G
Sbjct: 42 KHSGALFEEGLAPASTSSGEYDRDVSQAAASPLSRRLRRALSRGIDPAARVRSFKRSPATPKPGSADTSHISPPSGFSAGGSNVVSDDDVSSQGEEERDWETIVGQDGIKPAMGLTSFHSQKHGFRLWVQPDSVPVRFLQD-QQASGPVRVGDLSQTVSLEGGELQGVLEVECLPCERRFDAPLMLDFLVDGDSHGDRIIDSHGRIQYEILIKDSHSERWIRDPEPSIPLEIVQDNQGKVYVRAHVLHFSCWGLFKTKPLVFGPEQYHTQTIPWAQRRRNQSVIKNNTPGSVDIHIYAMRMSQWSAALESVKAGVGIEGFQGNFEFTGDVHENVNPAALVPQMVTIPSGHSHWIEVPRVGAGFRSSRKAVVIIVTESNDESGGTRVRMEAVEHLRSKTMLTVTLRVCEEGKVIGSPAAAESGGILSQVMRVIQNQVNATPHNPPSTAARTNTATGAGA 498
BLAST of mRNA_E-siliculosus-1a_F_contig1010.119.1 vs. uniprot
Match: D7G1B6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1B6_ECTSI) HSP 1 Score: 116 bits (291), Expect = 8.300e-25 Identity = 83/221 (37.56%), Postives = 115/221 (52.04%), Query Frame = 2 Query: 1100 QTIPWVQSKRHQSLIQNNTPRGVDIHIYAMRMSQWSAAVESVKAGAGVEGFQANFEFTGDVRQNVNPAALVPQMVTIPSGHSHWIEVPRVGAGFRSSRKAVVMIVTEFNDENDGKRMRLEAVEHLRSRTMLTVTLRVSGE--GKVI--------------------------------------------GSP-----VASEAGGILSQLMRAIQNDVNAT 1609
+ IP+ +RH+S+I+NN+ G I ++ M MS WSA +ESV AGAG G + N E D +++ AA + Q+V IP GHSHW E+PRV G SRKA+V+I +E D +M+L+AV HLRS T+LTV+L S G+V+ SP V SE GGILSQ+MR IQ +++A+
Sbjct: 5 ERIPFGSRRRHKSVIRNNSNGGESIFVFVMSMSVWSAGLESVMAGAGA-GVKRNVEVKFDPSASISSAA-IRQVVVIPPGHSHWFEIPRVAGGSFFSRKAMVVIASEGEDP----KMQLQAVVHLRSSTLLTVSLGPSSRTRGRVVVDTLTRENLISHDKANEQHSSPQADRSDTETAPASTCDTASNGESSPFDFVEVGSEDGGILSQIMRVIQTNLSAS 219 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1010.119.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 5 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1010.119.1 >prot_E-siliculosus-1a_F_contig1010.119.1 ID=prot_E-siliculosus-1a_F_contig1010.119.1|Name=mRNA_E-siliculosus-1a_F_contig1010.119.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=594bp MAAASSSTGTTCTEPEHAGRATEEGLAVMTSRPFSRDVSQEAPLPLGRRLback to top mRNA from alignment at E-siliculosus-1a_F_contig1010:2207..8312- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1010.119.1 ID=mRNA_E-siliculosus-1a_F_contig1010.119.1|Name=mRNA_E-siliculosus-1a_F_contig1010.119.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=6106bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1010:2207..8312- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1010:2207..8312- >mRNA_E-siliculosus-1a_F_contig1010.119.1 ID=mRNA_E-siliculosus-1a_F_contig1010.119.1|Name=mRNA_E-siliculosus-1a_F_contig1010.119.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=3564bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1010:2207..8312- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |