mRNA_E-siliculosus-1a_F_contig10080.111.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10080.111.1 vs. uniprot
Match: D8LIU5_ECTSI (Poly(A)-specific ribonuclease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIU5_ECTSI) HSP 1 Score: 197 bits (500), Expect = 5.590e-60 Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 2 Query: 2 RNVWADNLETEMVIIRELVEDYPYVAMDTEFPGVVARPVGDFNQPDFQYQTLRCNVDMLKMIQLGLSFANEKGELPEDGCCTWQFNFAFNL 274
RNVWADNLETEMVIIRELVEDYPYVAMDTEFPGVVARPVGDFNQPDFQYQTLRCNVDMLKMIQLGLSFANEKGELPEDGCCTWQFNFAFNL
Sbjct: 58 RNVWADNLETEMVIIRELVEDYPYVAMDTEFPGVVARPVGDFNQPDFQYQTLRCNVDMLKMIQLGLSFANEKGELPEDGCCTWQFNFAFNL 148
BLAST of mRNA_E-siliculosus-1a_F_contig10080.111.1 vs. uniprot
Match: A0A6H5JI77_9PHAE (Poly(A)-specific ribonuclease n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI77_9PHAE) HSP 1 Score: 196 bits (497), Expect = 7.980e-59 Identity = 90/91 (98.90%), Postives = 91/91 (100.00%), Query Frame = 2 Query: 2 RNVWADNLETEMVIIRELVEDYPYVAMDTEFPGVVARPVGDFNQPDFQYQTLRCNVDMLKMIQLGLSFANEKGELPEDGCCTWQFNFAFNL 274
RNVWADNLETEMVIIRELV+DYPYVAMDTEFPGVVARPVGDFNQPDFQYQTLRCNVDMLKMIQLGLSFANEKGELPEDGCCTWQFNFAFNL
Sbjct: 61 RNVWADNLETEMVIIRELVQDYPYVAMDTEFPGVVARPVGDFNQPDFQYQTLRCNVDMLKMIQLGLSFANEKGELPEDGCCTWQFNFAFNL 151
BLAST of mRNA_E-siliculosus-1a_F_contig10080.111.1 vs. uniprot
Match: A0A835Z498_9STRA (Poly(A)-specific ribonuclease n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z498_9STRA) HSP 1 Score: 157 bits (398), Expect = 3.140e-45 Identity = 73/91 (80.22%), Postives = 79/91 (86.81%), Query Frame = 2 Query: 2 RNVWADNLETEMVIIRELVEDYPYVAMDTEFPGVVARPVGDFNQPDFQYQTLRCNVDMLKMIQLGLSFANEKGELPEDGCCTWQFNFAFNL 274
RNVW DNLE EM IRE+VE YPYVAMDTEFPGVVARP+GDF Q D+QYQTLRCNVD+LK+IQLGLSFANEKGE E GCC WQFNF F+L
Sbjct: 35 RNVWVDNLEEEMAKIREVVETYPYVAMDTEFPGVVARPIGDFGQSDYQYQTLRCNVDLLKIIQLGLSFANEKGEFAE-GCCCWQFNFKFSL 124
BLAST of mRNA_E-siliculosus-1a_F_contig10080.111.1 vs. uniprot
Match: A0A836C813_9STRA (Poly(A)-specific ribonuclease n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C813_9STRA) HSP 1 Score: 155 bits (393), Expect = 2.000e-44 Identity = 72/91 (79.12%), Postives = 80/91 (87.91%), Query Frame = 2 Query: 2 RNVWADNLETEMVIIRELVEDYPYVAMDTEFPGVVARPVGDFNQPDFQYQTLRCNVDMLKMIQLGLSFANEKGELPEDGCCTWQFNFAFNL 274
RNVWADNLE EM IRE+VE YPY+AMDTEFPGVVARP+GD +Q D+QYQTLRCNVD+LK+IQLGLSFANEKGE E GCC WQFNF F+L
Sbjct: 31 RNVWADNLEEEMAKIREVVEKYPYIAMDTEFPGVVARPLGDVSQSDYQYQTLRCNVDLLKIIQLGLSFANEKGEFAE-GCCCWQFNFKFSL 120
BLAST of mRNA_E-siliculosus-1a_F_contig10080.111.1 vs. uniprot
Match: A0A8H7Q458_MORIS (Poly(A)-specific ribonuclease n=1 Tax=Mortierella isabellina TaxID=91625 RepID=A0A8H7Q458_MORIS) HSP 1 Score: 142 bits (357), Expect = 1.160e-39 Identity = 66/92 (71.74%), Postives = 78/92 (84.78%), Query Frame = 2 Query: 2 RNVWADNLETEMVIIRELVEDYPYVAMDTEFPGVVARPVGDFN-QPDFQYQTLRCNVDMLKMIQLGLSFANEKGELPEDGCCTWQFNFAFNL 274
R VWA+NLE EMV +R+LVEDYPY+AMDTEFPGVVARP+G F D+ YQTLRCNVD+LK+IQLG++FA+E G LPE+ C TWQFNF FNL
Sbjct: 8 REVWAENLEEEMVHLRDLVEDYPYLAMDTEFPGVVARPIGTFRTSSDYHYQTLRCNVDLLKIIQLGVTFADENGNLPENAC-TWQFNFRFNL 98
BLAST of mRNA_E-siliculosus-1a_F_contig10080.111.1 vs. uniprot
Match: A0A197JNR4_9FUNG (Poly(A)-specific ribonuclease n=3 Tax=Mortierellaceae TaxID=4854 RepID=A0A197JNR4_9FUNG) HSP 1 Score: 139 bits (350), Expect = 3.540e-39 Identity = 62/92 (67.39%), Postives = 78/92 (84.78%), Query Frame = 2 Query: 2 RNVWADNLETEMVIIRELVEDYPYVAMDTEFPGVVARPVGDFN-QPDFQYQTLRCNVDMLKMIQLGLSFANEKGELPEDGCCTWQFNFAFNL 274
R VWA+NL+ EM ++R+LV+ YPY+AMDTEFPGVVARP+G+F D+ YQTLRCNVD+LKMIQLG++FA+E G +P+D C TWQFNF FNL
Sbjct: 11 REVWAENLDREMALLRDLVDQYPYLAMDTEFPGVVARPIGNFRTSADYHYQTLRCNVDLLKMIQLGVTFADENGNVPKDAC-TWQFNFKFNL 101
BLAST of mRNA_E-siliculosus-1a_F_contig10080.111.1 vs. uniprot
Match: A0A4P9Z628_9FUNG (Poly(A)-specific ribonuclease n=1 Tax=Syncephalis pseudoplumigaleata TaxID=1712513 RepID=A0A4P9Z628_9FUNG) HSP 1 Score: 139 bits (349), Expect = 4.880e-39 Identity = 64/92 (69.57%), Postives = 78/92 (84.78%), Query Frame = 2 Query: 2 RNVWADNLETEMVIIRELVEDYPYVAMDTEFPGVVARPVGDFNQP-DFQYQTLRCNVDMLKMIQLGLSFANEKGELPEDGCCTWQFNFAFNL 274
R VWADNLE+EM ++R+LVE YPY+AMDTEFPGVVARP+G F D+ YQTLRCNVD+LK+IQLGL+FANE+GE+P G TWQF+F F+L
Sbjct: 10 REVWADNLESEMALLRDLVEHYPYLAMDTEFPGVVARPIGSFRTASDYHYQTLRCNVDLLKIIQLGLTFANEQGEMPP-GAATWQFHFKFSL 100
BLAST of mRNA_E-siliculosus-1a_F_contig10080.111.1 vs. uniprot
Match: A0A8H7ZUU1_9FUNG (Poly(A)-specific ribonuclease (Fragment) n=1 Tax=Olpidium bornovanus TaxID=278681 RepID=A0A8H7ZUU1_9FUNG) HSP 1 Score: 135 bits (339), Expect = 7.390e-39 Identity = 60/92 (65.22%), Postives = 77/92 (83.70%), Query Frame = 2 Query: 2 RNVWADNLETEMVIIRELVEDYPYVAMDTEFPGVVARPVGDFN-QPDFQYQTLRCNVDMLKMIQLGLSFANEKGELPEDGCCTWQFNFAFNL 274
R VWADNL+ EM ++R+LV+ YPY+AMDTEFPGVVARP+G+F D+ YQTLRCNVD+LK+IQLG++ A+E+G LP G CTWQFNF F++
Sbjct: 11 REVWADNLDGEMAVLRDLVDTYPYLAMDTEFPGVVARPIGNFRTSADYHYQTLRCNVDLLKIIQLGITLADERGNLPP-GVCTWQFNFKFSI 101
BLAST of mRNA_E-siliculosus-1a_F_contig10080.111.1 vs. uniprot
Match: A0A068RV61_9FUNG (Poly(A)-specific ribonuclease n=1 Tax=Lichtheimia corymbifera JMRC:FSU:9682 TaxID=1263082 RepID=A0A068RV61_9FUNG) HSP 1 Score: 139 bits (350), Expect = 1.150e-38 Identity = 64/92 (69.57%), Postives = 76/92 (82.61%), Query Frame = 2 Query: 2 RNVWADNLETEMVIIRELVEDYPYVAMDTEFPGVVARPVGDFN-QPDFQYQTLRCNVDMLKMIQLGLSFANEKGELPEDGCCTWQFNFAFNL 274
R VWADNLE EM +R+LVEDYPY+AMDTEFPGVVARP+G F D+ YQTLRCNVD+LK+IQLG++FA+E G LP + CTWQFNF FN+
Sbjct: 10 REVWADNLEEEMAYLRDLVEDYPYLAMDTEFPGVVARPIGTFRTSSDYHYQTLRCNVDLLKIIQLGVTFADEHGNLPRN-VCTWQFNFKFNI 100
BLAST of mRNA_E-siliculosus-1a_F_contig10080.111.1 vs. uniprot
Match: A0A397VEI4_9GLOM (Poly(A)-specific ribonuclease n=2 Tax=Glomeromycetes TaxID=214506 RepID=A0A397VEI4_9GLOM) HSP 1 Score: 138 bits (347), Expect = 1.540e-38 Identity = 63/92 (68.48%), Postives = 77/92 (83.70%), Query Frame = 2 Query: 2 RNVWADNLETEMVIIRELVEDYPYVAMDTEFPGVVARPVGDFN-QPDFQYQTLRCNVDMLKMIQLGLSFANEKGELPEDGCCTWQFNFAFNL 274
+ VWA+NLE EM ++R+LVE YPY+AMDTEFPGVVARP+G+F D+ YQTLRCNVD+LK+IQLG++FA+E G LP D CTWQFNF FNL
Sbjct: 11 KEVWAENLEEEMSVLRDLVEKYPYLAMDTEFPGVVARPIGNFRTSSDYHYQTLRCNVDLLKIIQLGITFADENGALPPD-TCTWQFNFRFNL 101 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10080.111.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10080.111.1 >prot_E-siliculosus-1a_F_contig10080.111.1 ID=prot_E-siliculosus-1a_F_contig10080.111.1|Name=mRNA_E-siliculosus-1a_F_contig10080.111.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=92bp PKRVGGQPRDRDGDHPRAGGGLPLRGHGHRVPGRGGKARGRLQPAGLPVPback to top mRNA from alignment at E-siliculosus-1a_F_contig10080:124..1057- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig10080.111.1 ID=mRNA_E-siliculosus-1a_F_contig10080.111.1|Name=mRNA_E-siliculosus-1a_F_contig10080.111.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=934bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10080:124..1057- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10080:124..1057- >mRNA_E-siliculosus-1a_F_contig10080.111.1 ID=mRNA_E-siliculosus-1a_F_contig10080.111.1|Name=mRNA_E-siliculosus-1a_F_contig10080.111.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=552bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10080:124..1057- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |