mRNA_E-siliculosus-1a_F_contig1008.107.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1008.107.1 vs. uniprot
Match: A0A6H5L2G9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2G9_9PHAE) HSP 1 Score: 1283 bits (3319), Expect = 0.000e+0 Identity = 689/764 (90.18%), Postives = 700/764 (91.62%), Query Frame = 1 Query: 55 MVKLNNRRGHGGHHDVRKNVDAPEPGKRPPPATPPAGVRTPESAPHAAEKDGFTPDPALVSDGLSVLEAWEGVRDLGRLAVEALVRQAASLFRRKNGALPPAPRIAVLILLAVYIYDRXXXXXXXXXXXXXXXSPREPQRSSVARRDLRERGDGNRGPPSTAVAFDLAASLHSPSRSLFSRLRQAAGTPPLRAAGSPWTRRTYEVVPQPDGIDPSLPSPAQARAALARTGQARRSLMPGLTSRRGGGEGEVEGERSVPMAASSGRGVEGGTTSSARWGXXXXXGSWLGWXXXRVRGWTRCREPRSAGXXXXXXRRYMLWLLALWLVASVLEERERDRAAWLAWDEGYRRGQASRALDPAAEAETTAWLNHILAGAWGGTKRAVPRGFAGVNGIAGGRDVHGCVVTGMLAADGLSSFVAEHLTEGFLEVLEEMKPTSVVGVELLDVELGSSAPQILGITMLDPTSSASPGWGDGRCSHEGECLSFRVDLEVAAPDLRVGVRVKVSSLEKALLPTGTVRLLELFFRGSMSVRAELRPEFPFVKTALIAFDDPPDVQVKLEQWGLDTLSLGTVPAAVDEWARMALQQAISPYVMPGFIEVDAASAICPDXXXXXXXXKAEKQQQGKVGGVDIRLPSSRLPAATAATFAKGREAAAGGKVNLRNVPGKDRGNRRFGNKTGKKADERKPGNFSGQDSGRFPTAASAFEGDGLVGRGGRAAAMANLYEHRGGMGRVVQWLKDRLTNYVNASNERPTESEGRHVMDWQGMD 2346 MVKLNNRRG GGHHDVRKNV+APEPGKRPPPATPPAGVR E APH AEKDGFTPDPALVSDGLSVLEAWEGVRDLGRLAVEALVRQAASLFRRKNGALPPAPRIA LILLA++IYDRXXXXXXXXXXXXXXX REPQRSSVARRDL ERGDGNRGPPSTAVAFDL ASLHSPSRSLFSRLRQAAGTPPLRA GSPWTRRTYEVVPQPDGIDPSLP+P+QARAALARTGQARRSLMPGLT RRGGGEGEVE ERSVPMAASSGRGVE GTTSS WG W RVRGWTRCREPR AG RRYMLWL ALWLVASVLEERERDRAAWLAWDEGYRRGQASRALDPAAEAETTAWLNHILA AWGGTKR VPRGFAGVNGIAGGRDVHGCVVTGMLAADG+SSFVAEHLTEGF+EVLEEMKPTSVVGVELLDVELGSSAPQILGITMLDPTSSASPGWGDGRCSHEGECLSFRVDLEVAAPDLRVGVRVKVSSLEKALLPTGTVRLLELFFRGSMSVRAELRPEFPFVKT LIAFDDPPDVQVKLEQWGLD LSLGTVPAAVDEWARMALQQAISPYVMPGFIEVDAASAICPD KAE QQ K GGVDIRLPSSRLP ATAAT AKGRE A GGKV+ RN+PGKDRGNRRFGNKTGK ADERKPG FS QDSGRFPT ASAFEGDGLVGRGGRAAAMANLYEHRGGMGRVVQWLK+RLTN+V ASNE PTESEGRHVMDWQGMD Sbjct: 1 MVKLNNRRGQGGHHDVRKNVNAPEPGKRPPPATPPAGVRKSEPAPHTAEKDGFTPDPALVSDGLSVLEAWEGVRDLGRLAVEALVRQAASLFRRKNGALPPAPRIAALILLAIFIYDRXXXXXXXXXXXXXXXX-REPQRSSVARRDLGERGDGNRGPPSTAVAFDLTASLHSPSRSLFSRLRQAAGTPPLRAPGSPWTRRTYEVVPQPDGIDPSLPTPSQARAALARTGQARRSLMPGLTRRRGGGEGEVERERSVPMAASSGRGVERGTTSSVGWG----------WWR-RVRGWTRCREPRRAGGGSGG-RRYMLWLFALWLVASVLEERERDRAAWLAWDEGYRRGQASRALDPAAEAETTAWLNHILASAWGGTKRVVPRGFAGVNGIAGGRDVHGCVVTGMLAADGMSSFVAEHLTEGFVEVLEEMKPTSVVGVELLDVELGSSAPQILGITMLDPTSSASPGWGDGRCSHEGECLSFRVDLEVAAPDLRVGVRVKVSSLEKALLPTGTVRLLELFFRGSMSVRAELRPEFPFVKTVLIAFDDPPDVQVKLEQWGLDALSLGTVPAAVDEWARMALQQAISPYVMPGFIEVDAASAICPDCPEVPTARKAETQQD-KAGGVDIRLPSSRLPGATAATLAKGRETADGGKVSGRNMPGKDRGNRRFGNKTGKNADERKPGKFSVQDSGRFPTVASAFEGDGLVGRGGRAAAMANLYEHRGGMGRVVQWLKERLTNFVVASNELPTESEGRHVMDWQGMD 750
BLAST of mRNA_E-siliculosus-1a_F_contig1008.107.1 vs. uniprot
Match: D7FW85_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW85_ECTSI) HSP 1 Score: 1158 bits (2996), Expect = 0.000e+0 Identity = 633/786 (80.53%), Postives = 642/786 (81.68%), Query Frame = 1 Query: 1 AEDTVRVVQRLVGWARDDMVKLNNRRGHGGHHDVRKNVDAPEPGKRPPPATPPAGVRTPESAPHAAEKDGFTPDPALVSDGLSVLEAWEGVRDLGRLAVEALVRQAASLFRRKNGALPPAPRIAVLILLAVYIYDRXXXXXXXXXXXXXXX----SPREPQRSSVARRDLRERGDGNRGPPSTAVAFDLAASLHSPSRSLFSRLRQAAGTPPLRAAGSPWTRRTYEVVPQPDGIDPSLPSPAQARAALARTGQARRSLMPGLTSRRGGGEGEVEGERSVPMAASSGRGVEGGTTSSARWGXXXXXGSWLGWXXXRVRGWTRCREPRSAGXXXXXXRRYMLWLLALWLVASVLEERERDRAAWLAWDEGYRRGQASRALDPAAEAETTAWLNHILAGAWGGTKRAVPRGFAGVNGIAGGRDVHGCVVTGMLAADGLSSFVAEHLTEGFLEVLEEMKPTSVVGVELLDVELGSSAPQILGITMLDPTSSASPGWGDGRCSHEGECLSFRVDLEVAAPDLRVGVRVKVSSLEKALLPTGTVRLLELFFRGSMSVRAELRPEFPFVKTALIAFDDPPDVQVKLEQWGLDTLSLGTVPAAVDEWARMALQQAISPYVMPGFIEVDAASAICPDXXXXXXXXKAEKQQQGKVGGVDIRLPSSRLPAATAATFAKGREAAAGGKVNLRNVPGKDRGNRRFGNKTGKKADERKPGNFSGQDSGRFPTAASAFEGDGLVGRGGRAAAMANLYEHRGGMGRVVQWLKDRLTNYVNASNERPTESEGRHVMDWQGMD 2346 AEDTVRVVQR VGWARDDMVKLNNRRG GGHHDVRKNVDAP PGKRPPPATPP GVRTPE APHAAEKDGFTPDPALVSDGLSVLEAWEGVRDLGRLAVEALVRQAA LFR KNGALPPAPRIA LILL V+IYDRXXXXXXXXXXXXXXX SPREPQRSSVARRDLRERGDGNRGPPSTAVAFDLAASLHSPSRSLFSRLRQAAGTPPLRA GSPWTRRTYEVVPQPDG+DPSLPSPAQ ERERDRAAWLAWDEGYRRGQASRALDPAAEAETTAWLNHILA AWGGTKR VP GFAGVNGIAGGRDVHGCVVTGMLAADGLSSFVAEHLTEGFLEVLEEMKPTSVVGVELLDVELGSSAPQILGITMLDPTSSASPGWGDGRC+HEGECLSFRVDLEVAAPDLRVGVRVKVSSLEKALLPTGTVRLLELFFRGSMSVRAELRPEFPFVKTALIAFDDPPDVQ+KLEQWGLD LSLGTVPAAVDEWARMALQQAISPYVMPGFIEVDAASAICPD KAEKQQQGK GG+DIRLPSSRLPAATAATFAKGREAAAGGKV+ RNVPGKDRGNR FGNK GK ADERKPG FSGQDSGRFPTAASAFEGDGLVGRGGRAAAMANLYEHRGGMGRVVQWLKDRLTN+V +SNE PTE+EGRHVMDWQGMD Sbjct: 149 AEDTVRVVQRFVGWARDDMVKLNNRRGQGGHHDVRKNVDAPGPGKRPPPATPPVGVRTPEPAPHAAEKDGFTPDPALVSDGLSVLEAWEGVRDLGRLAVEALVRQAAGLFRLKNGALPPAPRIAALILLTVFIYDRXXXXXXXXXXXXXXXXXXXSPREPQRSSVARRDLRERGDGNRGPPSTAVAFDLAASLHSPSRSLFSRLRQAAGTPPLRAPGSPWTRRTYEVVPQPDGVDPSLPSPAQ--------------------------------------------------------------------------------------------------------------ERERDRAAWLAWDEGYRRGQASRALDPAAEAETTAWLNHILASAWGGTKRVVPTGFAGVNGIAGGRDVHGCVVTGMLAADGLSSFVAEHLTEGFLEVLEEMKPTSVVGVELLDVELGSSAPQILGITMLDPTSSASPGWGDGRCNHEGECLSFRVDLEVAAPDLRVGVRVKVSSLEKALLPTGTVRLLELFFRGSMSVRAELRPEFPFVKTALIAFDDPPDVQIKLEQWGLDALSLGTVPAAVDEWARMALQQAISPYVMPGFIEVDAASAICPDCPEVPAARKAEKQQQGKAGGIDIRLPSSRLPAATAATFAKGREAAAGGKVSGRNVPGKDRGNRGFGNKNGKNADERKPGKFSGQDSGRFPTAASAFEGDGLVGRGGRAAAMANLYEHRGGMGRVVQWLKDRLTNFVISSNEIPTETEGRHVMDWQGMD 824 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1008.107.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1008.107.1 >prot_E-siliculosus-1a_F_contig1008.107.1 ID=prot_E-siliculosus-1a_F_contig1008.107.1|Name=mRNA_E-siliculosus-1a_F_contig1008.107.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=765bp MVKLNNRRGHGGHHDVRKNVDAPEPGKRPPPATPPAGVRTPESAPHAAEKback to top mRNA from alignment at E-siliculosus-1a_F_contig1008:141..5064+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1008.107.1 ID=mRNA_E-siliculosus-1a_F_contig1008.107.1|Name=mRNA_E-siliculosus-1a_F_contig1008.107.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4924bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1008:141..5064+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1008:141..5064+ >mRNA_E-siliculosus-1a_F_contig1008.107.1 ID=mRNA_E-siliculosus-1a_F_contig1008.107.1|Name=mRNA_E-siliculosus-1a_F_contig1008.107.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=4590bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1008:141..5064+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |