mRNA_E-siliculosus-1a_F_contig10067.104.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10067.104.1 vs. uniprot
Match: D7FU50_ECTSI (CBF domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FU50_ECTSI) HSP 1 Score: 134 bits (337), Expect = 9.460e-35 Identity = 67/71 (94.37%), Postives = 68/71 (95.77%), Query Frame = 1 Query: 37 RKRHQAFGDAWLACLRLPLPPALYRRVLLFLPGNVIPYMPSPVRLADFLTAAYGLGGVRSVLALDALFLLM 249 R +AFGDAWLACLRLPLPPALYRRVLLFLPGNVIPYMPSPVRLADFLTAAYGLGGVRSVLALDALFLLM Sbjct: 491 RYHKKAFGDAWLACLRLPLPPALYRRVLLFLPGNVIPYMPSPVRLADFLTAAYGLGGVRSVLALDALFLLM 561
BLAST of mRNA_E-siliculosus-1a_F_contig10067.104.1 vs. uniprot
Match: A0A150GZC0_GONPE (CBF domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GZC0_GONPE) HSP 1 Score: 81.3 bits (199), Expect = 4.140e-16 Identity = 46/83 (55.42%), Postives = 57/83 (68.67%), Query Frame = 1 Query: 1 PPPRFVWDACPKRKRHQAFGDAWLACLRLPLPPALYRRVLLFLPGNVIPYMPSPVRLADFLTAAYGLGGVRSVLALDALFLLM 249 P R W A PK ++ + FGDAWLA L LPLPP + R LL LPG+VIP +P+PVRLADFLT G G+ +LAL +FLL+ Sbjct: 314 PARRAQW-ANPKMQK-RLFGDAWLALLSLPLPPDVLRGALLRLPGSVIPALPAPVRLADFLTHCLGRSGLTGMLALHGIFLLV 394
BLAST of mRNA_E-siliculosus-1a_F_contig10067.104.1 vs. uniprot
Match: A0A7S0YD13_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Polytomella parva TaxID=51329 RepID=A0A7S0YD13_9CHLO) HSP 1 Score: 78.2 bits (191), Expect = 1.620e-15 Identity = 41/82 (50.00%), Postives = 53/82 (64.63%), Query Frame = 1 Query: 4 PPRFVWDACPKRKRHQAFGDAWLACLRLPLPPALYRRVLLFLPGNVIPYMPSPVRLADFLTAAYGLGGVRSVLALDALFLLM 249 P + W +KR AFGDAWLACLRLPLP A+ RR LL LP +IP++ P++L+D LT GG+ +LAL LF L+ Sbjct: 78 PTKATWLNVKNQKR--AFGDAWLACLRLPLPSAVLRRALLLLPTRIIPHLLQPLQLSDLLTFLLNRGGLVGILALHGLFQLV 157
BLAST of mRNA_E-siliculosus-1a_F_contig10067.104.1 vs. uniprot
Match: A0A0U9HMF3_KLENI (CBF domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A0U9HMF3_KLENI) HSP 1 Score: 77.8 bits (190), Expect = 6.870e-15 Identity = 41/77 (53.25%), Postives = 54/77 (70.13%), Query Frame = 1 Query: 19 WDACPKRKRHQAFGDAWLACLRLPLPPALYRRVLLFLPGNVIPYMPSPVRLADFLTAAYGLGGVRSVLALDALFLLM 249 W KRKR A D WLA L+LPLP Y++VL+ L G ++P MP+PV L+DFLT +Y LGGV SV++LD L+ L+ Sbjct: 240 WTDPKKRKRVAA--DCWLAMLKLPLPVDAYKKVLVKLRGTILPLMPNPVLLSDFLTDSYNLGGVVSVMSLDGLYTLI 314
BLAST of mRNA_E-siliculosus-1a_F_contig10067.104.1 vs. uniprot
Match: A0A1Z5JIV6_FISSO (U3 small nucleolar RNA-associated protein 19 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JIV6_FISSO) HSP 1 Score: 77.0 bits (188), Expect = 1.260e-14 Identity = 38/66 (57.58%), Postives = 47/66 (71.21%), Query Frame = 1 Query: 52 AFGDAWLACLRLPLPPALYRRVLLFLPGNVIPYMPSPVRLADFLTAAYGLGGVRSVLALDALFLLM 249 A+ AWLA L+L LPP ++ L FLPGNV+P +P P+R +DF AY GGV SVLALD LFLL+ Sbjct: 271 AWSKAWLAMLKLDLPPIALKKALRFLPGNVLPLVPHPLRFSDFFMEAYNHGGVVSVLALDGLFLLI 336
BLAST of mRNA_E-siliculosus-1a_F_contig10067.104.1 vs. uniprot
Match: A0A835YPS8_9STRA (CBF/Mak21 family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPS8_9STRA) HSP 1 Score: 73.9 bits (180), Expect = 1.560e-13 Identity = 34/58 (58.62%), Postives = 42/58 (72.41%), Query Frame = 1 Query: 37 RKRHQAFGDAWLACLRLPLPPALYRRVLLFLPGNVIPYMPSPVRLADFLTAAYGLGGV 210 R +AF DAW+ACL LPLPP LYR VLL+LP V+P M +P++LADF T Y GG+ Sbjct: 393 RYHRKAFADAWVACLALPLPPPLYREVLLWLPQKVMPEMGAPLKLADFFTQGYRQGGM 450
BLAST of mRNA_E-siliculosus-1a_F_contig10067.104.1 vs. uniprot
Match: A0A226N954_CALSU (CBF domain-containing protein n=1 Tax=Callipepla squamata TaxID=9009 RepID=A0A226N954_CALSU) HSP 1 Score: 72.8 bits (177), Expect = 3.440e-13 Identity = 36/80 (45.00%), Postives = 50/80 (62.50%), Query Frame = 1 Query: 10 RFVWDACPKRKRHQAFGDAWLACLRLPLPPALYRRVLLFLPGNVIPYMPSPVRLADFLTAAYGLGGVRSVLALDALFLLM 249 R W + QAF WL L+ LP LY++VL+ L +++PYM P + DFLTAAYG+GG S+LAL+ LF+L+ Sbjct: 115 REEWKVSKLQAHKQAFERMWLTFLKHQLPSGLYKKVLVILHDSILPYMNEPTLMIDFLTAAYGVGGAISLLALNGLFILI 194
BLAST of mRNA_E-siliculosus-1a_F_contig10067.104.1 vs. uniprot
Match: UPI0014259BA4 (nucleolar complex protein 4 homolog B-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI0014259BA4) HSP 1 Score: 72.8 bits (177), Expect = 3.470e-13 Identity = 35/71 (49.30%), Postives = 52/71 (73.24%), Query Frame = 1 Query: 37 RKRHQAFGDAWLACLRLPLPPALYRRVLLFLPGNVIPYMPSPVRLADFLTAAYGLGGVRSVLALDALFLLM 249 +++ +AF +AWL+ L L LP +Y++VL + +IP M SPV L DFLTA+Y +GG S+LAL+A+F+LM Sbjct: 248 KEQRKAFSNAWLSFLLLSLPLHVYKKVLFMMHDKIIPNMSSPVMLTDFLTASYNIGGAISLLALNAIFILM 318
BLAST of mRNA_E-siliculosus-1a_F_contig10067.104.1 vs. uniprot
Match: UPI001425A872 (LOW QUALITY PROTEIN: nucleolar complex protein 4 homolog B-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI001425A872) HSP 1 Score: 72.8 bits (177), Expect = 3.870e-13 Identity = 35/71 (49.30%), Postives = 52/71 (73.24%), Query Frame = 1 Query: 37 RKRHQAFGDAWLACLRLPLPPALYRRVLLFLPGNVIPYMPSPVRLADFLTAAYGLGGVRSVLALDALFLLM 249 +++ +AF +AWL+ L L LP +Y++VL + +IP M SPV L DFLTA+Y +GG S+LAL+A+F+LM Sbjct: 248 KEQRKAFSNAWLSFLLLSLPLHVYKKVLFMMHDKIIPNMSSPVMLTDFLTASYNIGGAISLLALNAIFILM 318
BLAST of mRNA_E-siliculosus-1a_F_contig10067.104.1 vs. uniprot
Match: A0A7S1CDG6_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CDG6_9STRA) HSP 1 Score: 72.8 bits (177), Expect = 3.910e-13 Identity = 36/70 (51.43%), Postives = 50/70 (71.43%), Query Frame = 1 Query: 40 KRHQAFGDAWLACLRLPLPPALYRRVLLFLPGNVIPYMPSPVRLADFLTAAYGLGGVRSVLALDALFLLM 249 K +AF DAWLA +R PLPP ++R+ LL LP +IP+M P+ L DFLT +Y GGV ++LAL L++L+ Sbjct: 242 KLRRAFEDAWLAMMRRPLPPDVFRKTLLLLPKRIIPHMLHPLLLCDFLTDSYDEGGVVALLALHGLWVLI 311 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10067.104.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10067.104.1 >prot_E-siliculosus-1a_F_contig10067.104.1 ID=prot_E-siliculosus-1a_F_contig10067.104.1|Name=mRNA_E-siliculosus-1a_F_contig10067.104.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=83bp PPPRFVWDACPKRKRHQAFGDAWLACLRLPLPPALYRRVLLFLPGNVIPYback to top mRNA from alignment at E-siliculosus-1a_F_contig10067:2383..2631- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig10067.104.1 ID=mRNA_E-siliculosus-1a_F_contig10067.104.1|Name=mRNA_E-siliculosus-1a_F_contig10067.104.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=249bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10067:2383..2631- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10067:2383..2631- >mRNA_E-siliculosus-1a_F_contig10067.104.1 ID=mRNA_E-siliculosus-1a_F_contig10067.104.1|Name=mRNA_E-siliculosus-1a_F_contig10067.104.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=498bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10067:2383..2631- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |