mRNA_E-siliculosus-1a_F_contig10060.101.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10060.101.1 vs. uniprot
Match: Q8QN59_ESV1K (EsV-1-231 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QN59_ESV1K) HSP 1 Score: 532 bits (1371), Expect = 9.430e-189 Identity = 264/292 (90.41%), Postives = 276/292 (94.52%), Query Frame = 1 Query: 1 YYVLIGQMVSRNRKLAIRANLSCFDLSTILESVRTQFPKLIYLGIWYRDGFVYVYAQGAERMSDIMLTKALEGHMVITDISTYDAPTGELQEEWRAKPVRGNKKIEVKPDTTAVFVHPLGKESLQHVTSSYVADLLRPLPGIDVFFKFGLKLYSLHQNINFRARKGDKNARVCCSRNGWITVPRDEAYDEILQILVEKTREAVNTFRQTIPAYYFDHFDMYSDSILAYKDSALPEQRKLYERRRNKVLNNIAVSVTDNLRWMSGWSDKKRKLVYKAPPKRARRTSQPSTTEL 876 Y+V+IG+M RNRKLAIRANLSCFDLSTILESVRTQ PKLIYLGIWYRDGFVYVY QGAERMSD MLTKALEGHMVI ISTYDAP GELQEEWRAKPVRGNKK+EVK DTTAVFV+PLGKESLQH+TS+YVADLLRPLPGIDVF+KFGLKLYSLHQNINFRARKGDKNARVCCSR GWITVPRDEAYDEILQILVEKTREAV+ FRQTIPAYYFDHFDMYSDSILA+KDSA+PEQRKLYERRRNKVLNNIAVSVTDNL M GWSDKKRKLVYKA P R+RRTSQPSTTEL Sbjct: 92 YFVVIGKMALRNRKLAIRANLSCFDLSTILESVRTQCPKLIYLGIWYRDGFVYVYVQGAERMSDTMLTKALEGHMVIVHISTYDAPVGELQEEWRAKPVRGNKKVEVKADTTAVFVNPLGKESLQHITSNYVADLLRPLPGIDVFYKFGLKLYSLHQNINFRARKGDKNARVCCSRKGWITVPRDEAYDEILQILVEKTREAVSMFRQTIPAYYFDHFDMYSDSILAHKDSAVPEQRKLYERRRNKVLNNIAVSVTDNLCRMGGWSDKKRKLVYKALPTRSRRTSQPSTTEL 383
BLAST of mRNA_E-siliculosus-1a_F_contig10060.101.1 vs. uniprot
Match: D8LP42_ECTSI (EsV-1-231 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP42_ECTSI) HSP 1 Score: 518 bits (1334), Expect = 1.150e-184 Identity = 258/285 (90.53%), Postives = 269/285 (94.39%), Query Frame = 1 Query: 22 MVSRNRKLAIRANLSCFDLSTILESVRTQFPKLIYLGIWYRDGFVYVYAQGAERMSDIMLTKALEGHMVITDISTYDAPTGELQEEWRAKPVRGNKKIEVKPDTTAVFVHPLGKESLQHVTSSYVADLLRPLPGIDVFFKFGLKLYSLHQNINFRARKGDKNARVCCSRNGWITVPRDEAYDEILQILVEKTREAVNTFRQTIPAYYFDHFDMYSDSILAYKDSALPEQRKLYERRRNKVLNNIAVSVTDNLRWMSGWSDKKRKLVYKAPPKRARRTSQPSTTEL 876 MV RNRKL IRANLSCFDLSTILESVRTQ PKLIYLGIWYRDGFVYVY QGAERMSDIMLTKALEGHMVI ISTYDAP GELQEEWRAKPVRGNKKIE+K DTTAVFV+PLGKESL+H++ +YVADLLRPLPGIDVF+KFGLKLYSLHQNINFRARKGDKNARVCCSR GWITVPRDEAYDEILQILVEKTREAV+ FRQTIPAYYFDHFDM+SDSILAYKDSA+PEQRKLYERRRNKVLNNIAVSVTDNL M GWSDKKRKLVYKA P R+RRTSQPSTTEL Sbjct: 1 MVLRNRKLVIRANLSCFDLSTILESVRTQCPKLIYLGIWYRDGFVYVYVQGAERMSDIMLTKALEGHMVIEHISTYDAPGGELQEEWRAKPVRGNKKIEIKSDTTAVFVNPLGKESLRHISGNYVADLLRPLPGIDVFYKFGLKLYSLHQNINFRARKGDKNARVCCSRKGWITVPRDEAYDEILQILVEKTREAVSMFRQTIPAYYFDHFDMHSDSILAYKDSAVPEQRKLYERRRNKVLNNIAVSVTDNLCRMGGWSDKKRKLVYKALPTRSRRTSQPSTTEL 285
BLAST of mRNA_E-siliculosus-1a_F_contig10060.101.1 vs. uniprot
Match: A0A6H5K0V6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0V6_9PHAE) HSP 1 Score: 442 bits (1138), Expect = 3.850e-155 Identity = 229/282 (81.21%), Postives = 240/282 (85.11%), Query Frame = 1 Query: 22 MVSRNRKLAIRANLSCFDLSTILESVRTQFPKLIYLGIWYRDGFVYVYAQGAERMSDIMLTKALEGHMVITDISTYDAPTGELQEEWRAKPVRGNKKIEVKPDTTAVFVHPLGKESLQHVTSSYVADLLRPLPGIDVFFKFGLKLYSLHQNINFRARKGDKNARVCCSRNGWITVPRDEAYDEILQILVEKTREAVNTFRQTIPAYYFDHFDMYSDSILAYKDSALPEQRKLYERRRNKVLNNIAVSVTDNLRWMSGWSDKKRKLVYKAPPKRARRTSQPST 867 M RNRKLA+RANLSCFDL TILESVRTQ PKLIYLGIWYRDGFVYVYAQGAERMSDIML KALEGH+V TDIST+DAP E QEEWRAKPV GNKKIEVK +TTAVFVHPLGKESLQH TS ++ADLLRPLPGIDVF KFGLKLYSLHQNINFR RKGDKNARVCCSR GWITVPR+EAYDEILQILV+KTREAV+ ILAYKDSA PEQRKLYERRR +LNNIAVSVTDN+R MSGWSDKKRKLVYKAPPK ARRTSQ ST Sbjct: 1 MALRNRKLAVRANLSCFDLITILESVRTQCPKLIYLGIWYRDGFVYVYAQGAERMSDIMLAKALEGHIVFTDISTFDAPISEPQEEWRAKPVCGNKKIEVKANTTAVFVHPLGKESLQHATSDFIADLLRPLPGIDVFNKFGLKLYSLHQNINFRVRKGDKNARVCCSRKGWITVPREEAYDEILQILVKKTREAVSI-------------------ILAYKDSAFPEQRKLYERRR--ILNNIAVSVTDNMRRMSGWSDKKRKLVYKAPPKHARRTSQSST 261
BLAST of mRNA_E-siliculosus-1a_F_contig10060.101.1 vs. uniprot
Match: A0A6H5KC66_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC66_9PHAE) HSP 1 Score: 229 bits (583), Expect = 2.180e-67 Identity = 127/265 (47.92%), Postives = 166/265 (62.64%), Query Frame = 1 Query: 22 MVSRNRKLAIRANLSCFDLSTILESVRTQFPKLIYLGIWYRDGFVYVYAQGAERMSD---IMLTKALEGHMVITDISTYDAPTGELQEEWRAKPVRGNKKIEVKPDTTAVFVHPLGKESLQHVTSSYVADLLRPLPGIDVFFKFGLKLYSLHQNINFRARKGDKNARVCCSRNGWITVPRDEAYDEILQILVEKTREAVNTFRQTIPAYYFDHFDMYSDSILAYKDSALPEQRKLYERRRNKVLNNIAVSVTDNLRWMSGWSDKK 807 M R+RKL +RA SC DL +LE V P L+ L I + DG V Y Q E +S LT+ E HM +T IS Y GELQEEWR K R + DT + V+PLG+ESLQH+T YV DLL+ + VFFKFGLKLYSL QN+NFR RK + RV +++ WITV +DEAYDEIL +LVEKT EAV ++ + + +HF+M+ +L +DS++PE++KLYE+RRNK L+ IAVSV L + W K+ Sbjct: 1 MAPRHRKLVVRAEPSCVDLGILLEPVVAILPGLLLLAITFHDGRVCFYMQNTECVSRENLARLTQLFEKHMDVTGISPYSIIEGELQEEWRKKRKRASS-TGATADTCTILVNPLGEESLQHITREYVVDLLKQTLNVGVFFKFGLKLYSLPQNVNFRTRKYYSDVRVR-TKDKWITVSKDEAYDEILFMLVEKTHEAVEMYKDGVSEFDMNHFNMFLPVVLEGRDSSVPERKKLYEKRRNKGLDTIAVSVNARLSQLGRWRGKR 263
BLAST of mRNA_E-siliculosus-1a_F_contig10060.101.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE) HSP 1 Score: 221 bits (563), Expect = 1.390e-61 Identity = 124/259 (47.88%), Postives = 160/259 (61.78%), Query Frame = 1 Query: 40 KLAIRANLSCFDLSTILESVRTQFPKLIYLGIWYRDGFVYVYAQGAERMSD---IMLTKALEGHMVITDISTYDAPTGELQEEWRAKPVRGNKKIEVKPDTTAVFVHPLGKESLQHVTSSYVADLLRPLPGIDVFFKFGLKLYSLHQNINFRARKGDKNARVCCSRNGWITVPRDEAYDEILQILVEKTREAVNTFRQTIPAYYFDHFDMYSDSILAYKDSALPEQRKLYERRRNKVLNNIAVSVTDNLRWMSGWSDKK 807 KL +RA SC DL +LE V P L+ L I + DG V Y Q E +S LT+ E HM +T IS Y GELQEEWR K R + DT + V+PLG+ESLQH+T YV DLL+ + VFFKFGLKLYSL QN+NFR RK + RV +++ WITV +DEAYDEIL +LVEKT EAV +R + + +HF+M+ +L +DS +PE++KLYE+ RNK L+ IAVSV L + W K+ Sbjct: 2135 KLVVRAEPSCVDLGILLEPVVAILPGLLLLAITFHDGRVCFYMQNTECVSRENLARLTQLFEKHMDVTGISPYSIIEGELQEEWRKKRKRASS-TGATADTCTILVNPLGEESLQHITREYVVDLLKQTLNVGVFFKFGLKLYSLPQNVNFRTRKYYSDVRVR-TKDKWITVSKDEAYDEILFMLVEKTHEAVEMYRDGVSEFDMNHFNMFLPVVLEGRDSPVPERKKLYEKSRNKGLDTIAVSVNARLSQLGRWRGKR 2391
BLAST of mRNA_E-siliculosus-1a_F_contig10060.101.1 vs. uniprot
Match: A0A6H5K135_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K135_9PHAE) HSP 1 Score: 199 bits (506), Expect = 3.300e-60 Identity = 115/262 (43.89%), Postives = 148/262 (56.49%), Query Frame = 1 Query: 7 VLIGQMVSRNRKLAIRANLSCFDLSTILESVRTQFPKLIYLGIWYRDGFVYVYAQGAERMSDIMLTKALEGHMVITDISTYDAPT-GELQEEWRAKPVRGNKKIEVKPDTTAVFVHPLGKESLQHVTSSYVADLLRPLPGIDVFFKFGLKLYSLHQNINFRARKGDKNARVCCSRNGWITVPRDEAYDEILQILVEKTREAVNTFRQTIPAYYFDHFDMYSDSILAYKDSALPEQRKLYERRRNKVLNNIAVSVTDNLRWMS 789 +++ + +RKL ++A+ SCFDLST+LE VRT++P LIYLGIW+ DG VYVY Q AERMSDI LT AL+ HMVIT+I+ Y P G G+ ++E ++ADLL L G+DVF+KFG+KLY L QN+NFRARKGDK +P+ + DHF+ ++SIL KDS +PEQRKLYER RNKVLNNIAV+VTDNL +S Sbjct: 1 MMLAYVAVHHRKLRVQADPSCFDLSTVLEPVRTEYPNLIYLGIWFHDGSVYVYVQSAERMSDIKLTSALKDHMVITNIAPYSIPLLGSCNRS-------GDPRLE------------------------FIADLLNTLHGVDVFYKFGIKLYVLEQNVNFRARKGDKRVSG------------------------------------VLPSCHIDHFEKPAESILDSKDSLVPEQRKLYERMRNKVLNNIAVNVTDNLSRLS 195 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10060.101.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 6 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10060.101.1 >prot_E-siliculosus-1a_F_contig10060.101.1 ID=prot_E-siliculosus-1a_F_contig10060.101.1|Name=mRNA_E-siliculosus-1a_F_contig10060.101.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=292bp MVSRNRKLAIRANLSCFDLSTILESVRTQFPKLIYLGIWYRDGFVYVYAQback to top mRNA from alignment at E-siliculosus-1a_F_contig10060:1167..2063+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig10060.101.1 ID=mRNA_E-siliculosus-1a_F_contig10060.101.1|Name=mRNA_E-siliculosus-1a_F_contig10060.101.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=897bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10060:1167..2063+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10060:1167..2063+ >mRNA_E-siliculosus-1a_F_contig10060.101.1 ID=mRNA_E-siliculosus-1a_F_contig10060.101.1|Name=mRNA_E-siliculosus-1a_F_contig10060.101.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1752bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10060:1167..2063+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |