mRNA_E-siliculosus-1a_F_contig10053.97.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10053.97.1 vs. uniprot
Match: D7G837_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G837_ECTSI) HSP 1 Score: 542 bits (1397), Expect = 1.680e-191 Identity = 297/333 (89.19%), Postives = 309/333 (92.79%), Query Frame = 1 Query: 1 PPPSYEQVAIKPGGQATSVDGPPPQGLXXXXXXXXXXXXXXXDDVNDGAEGKRSAGGEEAGDDGLGPVAKCRDRSKSLWIHFPHVELLFILYAFQGALAAQIDVLRHGSGALVPVAAIAMVVYPVLVLGVMLRVIFVRVLPPAATGLAFAVTQKDSYYTTNGERGCRGFFSRVRRGLKEDHSAFAWAKKGAWRTVENEDTKEQRLRNWFRIGFEPLFVDYTKAGSWFAAYALVEAAVIACVGVLIDNSQAQLLIFLGLNVVQFVLVVHLTPFANRVVESMAACRVGVNAFCMILLVGAEAEGDSVHAERMETAVGCFELILLIGRKYKTGSFQ 999 PPPSYEQVAI+PGGQ XXXXXXXXXXXXXX D+VN GAEG RSAGGEEAGDDGLGPVAKCRDRSKSLWIHFPHVELLFILYAFQGALAAQIDVLRHGSGALVPVAAIA+VVYPVLVLGVMLRVIFVRVLPP ATGLAFAVTQKD+YYTTNG+RGCRGFFSRVR+GL+EDHSAFAWAKKGAWRTVENEDTKEQRLRNWFRIGFEPLFVDYTKAGSWFA YAL+EAAVIA VGVLIDNSQ QLLIFLGLNVVQ VLVV LTPFANRVVESMAACRVGVNAFCM+LLVGAEAEGDSVHAERMETAVGCFELILLIGRK++ +F Sbjct: 54 PPPSYEQVAIEPGGQXXXXXXXXXXXXXXXXXXXXXXXXXXADNVNVGAEGTRSAGGEEAGDDGLGPVAKCRDRSKSLWIHFPHVELLFILYAFQGALAAQIDVLRHGSGALVPVAAIALVVYPVLVLGVMLRVIFVRVLPPVATGLAFAVTQKDTYYTTNGQRGCRGFFSRVRKGLEEDHSAFAWAKKGAWRTVENEDTKEQRLRNWFRIGFEPLFVDYTKAGSWFAVYALMEAAVIAGVGVLIDNSQVQLLIFLGLNVVQLVLVVRLTPFANRVVESMAACRVGVNAFCMVLLVGAEAEGDSVHAERMETAVGCFELILLIGRKHRQAAFS 386
BLAST of mRNA_E-siliculosus-1a_F_contig10053.97.1 vs. uniprot
Match: A0A6H5KCW7_9PHAE (VWFA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCW7_9PHAE) HSP 1 Score: 521 bits (1342), Expect = 7.230e-175 Identity = 286/320 (89.38%), Postives = 296/320 (92.50%), Query Frame = 1 Query: 10 SYEQVAIKPGGQATSVDGPPPQGLXXXXXXXXXXXXXXXDDVNDGAEGKRSAGGEEAGDDGLGPVAKCRDRSKSLWIHFPHVELLFILYAFQGALAAQIDVLRHGSGALVPVAAIAMVVYPVLVLGVMLRVIFVRVLPPAATGLAFAVTQKDSYYTTNGERGCRGFFSRVRRGLKEDHSAFAWAKKGAWRTVENEDTKEQRLRNWFRIGFEPLFVDYTKAGSWFAAYALVEAAVIACVGVLIDNSQAQLLIFLGLNVVQFVLVVHLTPFANRVVESMAACRVGVNAFCMILLVGAEAEGDSVHAERMETAVGCFELILLI 969 SYEQVAIKP GQ XXXXXXXXXXXXXXXDDVN GAEG RSAGGEEAGDDGLGPVAKCRDRSKSLWIHFPHVELLFILYAFQGALAAQ+DVLRHGSGALVPVAAIA+VVYPVLVL VM+RV+F RV PP ATGLAFAVTQKDSYYTTNG+RGCRGFF RVR+GL+EDHSAFAWAKKGAWRTVENED KEQRLRNWFRIGFEPLFVDYTKAGSWFA YAL+EAAVIACVGVLID+SQ QLLIFLGLNVVQFVLV HLTPFANRVVESMAACRVGVNAFCM+LLVGAEAEGDSVHAERMETAVGCFELILLI Sbjct: 612 SYEQVAIKPDGQXXXXXXXXXXXXXXXXXXXXXXXXXXXDDVNVGAEGTRSAGGEEAGDDGLGPVAKCRDRSKSLWIHFPHVELLFILYAFQGALAAQVDVLRHGSGALVPVAAIALVVYPVLVLWVMVRVVFARVFPPTATGLAFAVTQKDSYYTTNGQRGCRGFFWRVRKGLEEDHSAFAWAKKGAWRTVENEDAKEQRLRNWFRIGFEPLFVDYTKAGSWFALYALMEAAVIACVGVLIDSSQVQLLIFLGLNVVQFVLVAHLTPFANRVVESMAACRVGVNAFCMVLLVGAEAEGDSVHAERMETAVGCFELILLI 931
BLAST of mRNA_E-siliculosus-1a_F_contig10053.97.1 vs. uniprot
Match: D7G1B8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1B8_ECTSI) HSP 1 Score: 206 bits (525), Expect = 9.970e-62 Identity = 104/113 (92.04%), Postives = 107/113 (94.69%), Query Frame = 1 Query: 523 RGLKEDHSAFAWAKKGAWRTVENEDTKEQRLRNWFRIGFEPLFVDYTKAGSWFAAYALVEAAVIACVGVLIDNSQAQLLIFLGLNVVQFVLVVHLTPFANRVVESMAACRVGV 861 +GL+EDHSAFAWAKKGAWRTVENEDTKEQRLRNWFRIGFEPLFVDYTKAGSWFA YAL+EAAVIA V VLIDNSQ QLLIFLGLNVVQ VLVV LTPFANRVVESMAACRVGV Sbjct: 117 KGLEEDHSAFAWAKKGAWRTVENEDTKEQRLRNWFRIGFEPLFVDYTKAGSWFAVYALMEAAVIAGVEVLIDNSQVQLLIFLGLNVVQLVLVVRLTPFANRVVESMAACRVGV 229
BLAST of mRNA_E-siliculosus-1a_F_contig10053.97.1 vs. uniprot
Match: D8LN93_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN93_ECTSI) HSP 1 Score: 213 bits (542), Expect = 4.460e-58 Identity = 117/264 (44.32%), Postives = 163/264 (61.74%), Query Frame = 1 Query: 193 LGPVAKCRDRSKSLWIHFPHVELLFILYAFQGALAAQIDVLRHGSGALVPVAA-IAMVVYPVLVLGVMLRVIFVRVLPPAATGLAFAVTQKDSYYTTNGERGCRG----FFSRVRRGLKEDHSAFAWAKKGAWRTVENEDTKEQRLRNWFRIGFEPLFVDYTKAGSWFAAYALVEAAVIACVGVLIDNSQAQLLIFLGLNVVQFVLVVHLTPFANRVVESMAACRVGVNAFCMILL-VGAEAEGDSVHAERMETAVGCFELILL 966 L PVA+CR+ S+S W+HFPHVEL+F+ +A++GA+A+Q+ LR V +AA +A+V YP+L+ +LR FVRV P D+ + E G R F S+VR G +EDHS FAWA KG W T E ++ +R WFRIGFEPLFVD+TK+G+WF A+ LVE A + C+G LID S QL +F L+ + F+L+V PFAN V+ +M A VG++A CM LL V A + A ++++ V +L L Sbjct: 1020 LSPVAECREHSRSAWLHFPHVELVFLFFAYEGAVASQVSALREAGCPPVMIAAGLALVFYPILMFVAVLRTFFVRVRPNTLIVFTPKEADDDTGDAGDAEEGQRARSASFLSKVRAGWEEDHSLFAWANKGTWETAETDNEGTRREGQWFRIGFEPLFVDFTKSGAWFVAFTLVEWAALGCIGALIDESVLQLSLFCALHTLSFLLLVVFRPFANSVINAMGAGLVGIDAVCMALLAVSASRWEGTAAAGKVDSVVMLLQLFAL 1283
BLAST of mRNA_E-siliculosus-1a_F_contig10053.97.1 vs. uniprot
Match: D8LN89_ECTSI (Liver stage antigen 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN89_ECTSI) HSP 1 Score: 208 bits (529), Expect = 2.700e-56 Identity = 118/275 (42.91%), Postives = 175/275 (63.64%), Query Frame = 1 Query: 172 EEAGDDGLGPVAKCRDRSKSLWIHFPHVELLFILYAFQGALAAQIDVLRHGSGALVPVAAI-AMVVYPVLVLGVMLRVIFVRV--------LPPAATGLAFAVTQKDSYYTTNGERGCRGFFSRVRRGLKEDHSAFAWAKKGAWRTVENEDTKEQRLRNWFRIGFEPLFVDYTKAGSWFAAYALVEAAVIACVGVLIDNSQAQLLIFLGLNVVQFVLVVHLTPFANRVVESMAACRVGVNAFCM-ILLVGAEAEGDSVHAERMETAVGCFELILL 966 E G L +A+CR+RS+S+W+HFPHVEL+++L+AF+GA+AAQ+ +R + LV + A+ A++ +PVL+ ++ F ++ +P A AV + YT+ R F S+VRRGLKE +S FAW+ KG W +V+ D +++R R+WFRIGFEPLFVD+T AGSWFA YAL+E A VGV++DNS QL +F N V F+L+V L PFAN ++ M A G++A CM +L V A+ G + A ++++ V +L+ L Sbjct: 2383 ETVGRSKLSKIAECRERSQSVWLHFPHVELMYLLFAFEGAVAAQVSAIRENATLLVLILAVLALLFFPVLMTFNVMCTFFGKIRSKKHIVFIPNADD----AVEAESDLYTS-----VRSFGSKVRRGLKESYSMFAWSNKGEWESVDTPDEEDKRARDWFRIGFEPLFVDFTGAGSWFAVYALIELVANAVVGVVVDNSVLQLSLFGAFNTVSFLLLVVLKPFANGIINFMGAAVYGIDAACMAVLAVTADKWGGTERASQVDSVVVIVQLLTL 2648
BLAST of mRNA_E-siliculosus-1a_F_contig10053.97.1 vs. uniprot
Match: D7G1L9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1L9_ECTSI) HSP 1 Score: 201 bits (512), Expect = 6.650e-56 Identity = 119/264 (45.08%), Postives = 165/264 (62.50%), Query Frame = 1 Query: 202 VAKCRDRSKSLWIHFPHVELLFILYAFQGALAAQIDVLRHGSGALVPVAAIA-MVVYPVLVLGVMLRVIFVRVLPPAATGLAFAVTQKDSYYTTNGERGCRGFFSRVRRGLKEDHSAFAWAKKGAWRTVENEDTKEQRLRNWFRIGFEPLFVDYTKAGSWFAAYALVEAAVIACVGVLIDNSQAQLLIFLGLNVVQFVLVVHLTPFANRVVESMAACRVGVNAFCMILLVGAEAEGDSVH-------AERMETAVGCFELILLI 969 +A CR RS S+W++FPH+ELLF+L+AF+GA+A+Q+ +R G V +A A +VVYPVL++ + R VRV P T + F ++ + T+G R F S+VR GLKEDHS FAWA GAW TVE D + R + FRIGFEPLFVD+TK SWF Y L+E IAC VL+D+S QL +F GL+ + F+L+V PFAN ++ +M AC ++A M +L D+ H A+RM+TAV +L+ L+ Sbjct: 249 LADCRYRSSSVWLYFPHIELLFLLFAFEGAMASQLATMRGGGCPWVFYSACASLVVYPVLMIILSYRTHRVRVAPD--TLIVFKPVGEEENHGTDGTVP-RSFLSKVRTGLKEDHSMFAWANTGAWETVETPDEETVREGDQFRIGFEPLFVDFTKKASWFTVYFLLEMTGIACTAVLVDDSVVQLFLFCGLHSLSFLLLVIFRPFANSIINTMGACLTLIDAASMAMLA------DTAHRWQRTSRAKRMDTAVVVLQLVALV 503
BLAST of mRNA_E-siliculosus-1a_F_contig10053.97.1 vs. uniprot
Match: A0A6H5JD90_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD90_9PHAE) HSP 1 Score: 199 bits (505), Expect = 4.290e-53 Identity = 119/263 (45.25%), Postives = 161/263 (61.22%), Query Frame = 1 Query: 193 LGPVAKCRDRSKSLWIHFPHVELLFILYAFQGALAAQIDVLRHGSGALVPVAAIA-MVVYPVLVLGVMLRVIFVRVLPPAATGLAFAVTQKDSYYTTNGE--RGCRGFFSRVRRGLKEDHSAFAWAKKGAWRTVENEDTKEQRLRNWFRIGFEPLFVDYTKAGSWFAAYALVEAAVIACVGVLIDNSQAQLLIFLGLNVVQFVLVVHLTPFANRVVESMAACRVGVNAFCMILLVGAEA--EGDSVHAERMETAVGCFELILL 966 L PVA CR+ S S W+HFPHVEL+F+ +AF+GA+A+ +R+ + AIA MV+YP+L+ ++R +FVRV P L F +D TNG G GF SR + E++S F+WA KG W TV+ + R +WFRIGFEP+FVDYTK G+WF +LVE A IA VGV+IDNS QLL+F GL F+++V L PFAN V+ + AC V ++A C LL A EG S A + +AVG +++ L Sbjct: 1601 LSPVAMCREHSTSAWLHFPHVELVFLFFAFEGAVASFASAIRNSECPEMFYTAIAAMVLYPLLMFATVVRTLFVRVRPDEL--LIFKTYDEDG---TNGNTPNGRGGFLSRFKSSWAENYSLFSWADKGQWETVQTPNRNITREGDWFRIGFEPVFVDYTKRGTWFIVISLVEWASIALVGVMIDNSYVQLLLFCGLQSAMFLILVCLKPFANSVINGIGACIVAIDAVCTGLLAVAALKWEGTS-RATDVNSAVGVLQIVSL 1857
BLAST of mRNA_E-siliculosus-1a_F_contig10053.97.1 vs. uniprot
Match: D8LLG6_ECTSI (Mucin-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLG6_ECTSI) HSP 1 Score: 194 bits (492), Expect = 2.300e-51 Identity = 118/263 (44.87%), Postives = 160/263 (60.84%), Query Frame = 1 Query: 193 LGPVAKCRDRSKSLWIHFPHVELLFILYAFQGALAAQIDVLRHGSGALVPVAAIA-MVVYPVLVLGVMLRVIFVRVLPPAATGLAFAVTQKDSYYTTNGER-GCRG-FFSRVRRGLKEDHSAFAWAKKGAWRTVENEDTKEQRLRNWFRIGFEPLFVDYTKAGSWFAAYALVEAAVIACVGVLIDNSQAQLLIFLGLNVVQFVLVVHLTPFANRVVESMAACRVGVNAFCMILLVGAEA--EGDSVHAERMETAVGCFELILL 966 L PVA CR+ S S W+HFPHVEL+F+ +AF+GA+A+ +R+ + AIA MV+YP+L+ ++R +FVRV P L F +D TNG CRG F S + E++S F+WA KG W TV+ + R +WFRIGFEP+FVDYTK G+WF +LVE A IA VGV+IDNS QLL+F GL F+++V L PFAN V+ + AC V ++A LL A EG S A + +AVG +++ L Sbjct: 1560 LSPVATCREHSTSAWLHFPHVELVFLFFAFEGAVASFASAIRNSECPEMFYTAIAAMVLYPLLMFATVVRTLFVRVRPDEL--LIFKTYDEDG---TNGNAPNCRGGFLSHFKSSWAENYSLFSWADKGQWETVQTPNRNITREGDWFRIGFEPVFVDYTKRGTWFIVISLVEWASIALVGVMIDNSNVQLLLFCGLQSAMFLILVCLKPFANSVINGIGACIVAIDAVSTGLLAVAALKWEGTS-RATDVNSAVGVLQIVSL 1816
BLAST of mRNA_E-siliculosus-1a_F_contig10053.97.1 vs. uniprot
Match: D7G5F3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5F3_ECTSI) HSP 1 Score: 181 bits (459), Expect = 4.390e-50 Identity = 94/212 (44.34%), Postives = 139/212 (65.57%), Query Frame = 1 Query: 193 LGPVAKCRDRSKSLWIHFPHVELLFILYAFQGALAAQIDVLRHGSGALVPVAAIA-MVVYPVLVLGVMLRVIFVRVLPPAATGLAFAVTQKDSYYTTNGERGCRGFFSRVRRGLKEDHSAFAWAKKGAWRTVENEDTKEQRLRNWFRIGFEPLFVDYTKAGSWFAAYALVEAAVIACVGVLIDNSQAQLLIFLGLNVVQFVLVVHLTPFANR 825 +G V++CR+ S+S W+H+PH+EL+F+L+AF+GA+ +Q+ LR S + V AA+A +V YPVL++ +++R VRV A + F + D G G +S+ GL++D S FAWA KG W TV+ D +R +WFRIGFEPLF D+T+AGSWF Y L+E AV+AC+ VL+DN+ Q +F ++ + F+L+V PFANR Sbjct: 183 IGQVSQCRELSQSAWLHYPHLELVFLLFAFEGAVTSQVSALRTTSSSTVFYAAVATLVFYPVLMVAMVVRTHRVRVRSDAL--IVFTSNESDE-----GSTGTSSIYSKTIAGLRKDSSLFAWADKGQWETVQTTDEDARRNADWFRIGFEPLFADFTQAGSWFIVYTLIEWAVLACIAVLVDNTAVQCGLFCAIHSMTFILLVACKPFANR 387
BLAST of mRNA_E-siliculosus-1a_F_contig10053.97.1 vs. uniprot
Match: A0A6H5J9C2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9C2_9PHAE) HSP 1 Score: 185 bits (470), Expect = 2.370e-49 Identity = 106/252 (42.06%), Postives = 159/252 (63.10%), Query Frame = 1 Query: 193 LGPVAKCRDRSKSLWIHFPHVELLFILYAFQGALAAQIDVLRHGSGALVPVAAIA-MVVYPVLVLGVMLRVIFVRVLPPAATGLAFAVTQKDSYYTTNGERGCRGFFSRVRRGLKEDHSAFAWAKKGAWRTVENEDTKEQRLRNWFRIGFEPLFVDYTKAGSWFAAYALVEAAVIACVGVLIDNSQAQLLIFLGLNVVQFVLVVHLTPFANRVVESMAACRVGVNAFCM-ILLVGAEAEGDSVHAERMETAV 942 +G V+ CR+ S+S W+H+PH+EL+F+ +AF+GA+ +Q+ LR + + + AA+A +V+YP+L++ ++ R V V P A + FA ++ T G SR GLK D S F+WA KG W TV+ + K +R +WFRIGFEPLF D+T+AGSWF Y L+E AV+A + VL+DNS Q L+F ++ + FVL+V PFAN V+ ++AA + +A CM +L + A + A RM+TAV Sbjct: 350 IGQVSDCRELSQSPWLHYPHLELIFLFFAFEGAVTSQMAALRSANSSTILYAAVATLVLYPLLMVVMVARTHRVWVQPDAL--IVFASSE-----TEEALAGKPSTLSRTVSGLKNDFSLFSWADKGQWETVQTANDKARRKADWFRIGFEPLFADFTQAGSWFIIYTLIECAVLASIAVLVDNSAMQFLLFCAMHSLTFVLLVGWKPFANSVLNAVAAMVMLTDAVCMGMLALAAGTFNGTATAARMDTAV 594 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10053.97.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10053.97.1 >prot_E-siliculosus-1a_F_contig10053.97.1 ID=prot_E-siliculosus-1a_F_contig10053.97.1|Name=mRNA_E-siliculosus-1a_F_contig10053.97.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=309bp MVTTPDGAADDVNDGAEGKRSAGGEEAGDDGLGPVAKCRDRSKSLWIHFPback to top mRNA from alignment at E-siliculosus-1a_F_contig10053:5..2283+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig10053.97.1 ID=mRNA_E-siliculosus-1a_F_contig10053.97.1|Name=mRNA_E-siliculosus-1a_F_contig10053.97.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2279bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10053:5..2283+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10053:5..2283+ >mRNA_E-siliculosus-1a_F_contig10053.97.1 ID=mRNA_E-siliculosus-1a_F_contig10053.97.1|Name=mRNA_E-siliculosus-1a_F_contig10053.97.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1854bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10053:5..2283+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |