mRNA_E-siliculosus-1a_F_contig1004.91.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1004.91.1 vs. uniprot
Match: D7FKN7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKN7_ECTSI) HSP 1 Score: 169 bits (429), Expect = 1.500e-52 Identity = 98/115 (85.22%), Postives = 101/115 (87.83%), Query Frame = 1 Query: 1 MSLSPSSIRAVLKSAGQRVGGVSELERPARPEEIESAVATADGGEGTVSVSSPTGSSRENRSPATRGRSRTSRRGLSVGRGLIPSFL--PRDSKSQPHGRSSGSAGGHRQGQRYG 339
MSLSPSSIRAVLKSAGQR GGV ELERPARPEEIESAVATADGGEG VSV P GSSRENRSPATRGRSRT RRGLSVGR L+P+FL R+ K QPHGRSSGS GGHRQGQRYG
Sbjct: 1 MSLSPSSIRAVLKSAGQRAGGVPELERPARPEEIESAVATADGGEGLVSVGLPAGSSRENRSPATRGRSRTPRRGLSVGRDLMPNFLRAAREPKPQPHGRSSGSVGGHRQGQRYG 115
BLAST of mRNA_E-siliculosus-1a_F_contig1004.91.1 vs. uniprot
Match: A0A6H5JG62_9PHAE (IPPc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG62_9PHAE) HSP 1 Score: 134 bits (338), Expect = 2.450e-34 Identity = 82/98 (83.67%), Postives = 83/98 (84.69%), Query Frame = 1 Query: 1 MSLSPSSIRAVLKSAGQRVGGVSELERPARPEEIESAVATADGGEGTVSVSSPTGSSRENRSPATRGRSRTSRRGLSVGRGLIPSFLPRDS-KSQPHG 291
MSLSPSSIRAV KSAGQR GGVSELERPAR EEIESAVATADG EG VSV PTGSSRENRSPATRGRSRTSRRGLSVGRGLI +FL S K P G
Sbjct: 1 MSLSPSSIRAVFKSAGQRAGGVSELERPARSEEIESAVATADGEEGLVSVGLPTGSSRENRSPATRGRSRTSRRGLSVGRGLISNFLREPSTKMNPAG 98 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1004.91.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1004.91.1 >prot_E-siliculosus-1a_F_contig1004.91.1 ID=prot_E-siliculosus-1a_F_contig1004.91.1|Name=mRNA_E-siliculosus-1a_F_contig1004.91.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=113bp MSLSPSSIRAVLKSAGQRVGGVSELERPARPEEIESAVATADGGEGTVSVback to top mRNA from alignment at E-siliculosus-1a_F_contig1004:26318..27072- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1004.91.1 ID=mRNA_E-siliculosus-1a_F_contig1004.91.1|Name=mRNA_E-siliculosus-1a_F_contig1004.91.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=755bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1004:26318..27072- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1004:26318..27072- >mRNA_E-siliculosus-1a_F_contig1004.91.1 ID=mRNA_E-siliculosus-1a_F_contig1004.91.1|Name=mRNA_E-siliculosus-1a_F_contig1004.91.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=678bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1004:26318..27072- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |