mRNA_E-siliculosus-1a_F_contig1004.89.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1004.89.1 vs. uniprot
Match: D7FKN9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKN9_ECTSI) HSP 1 Score: 503 bits (1296), Expect = 2.630e-172 Identity = 245/258 (94.96%), Postives = 251/258 (97.29%), Query Frame = 2 Query: 725 NRYVLVAPNSCLSTEKASLTNTRHRPDTESFEKVVVLAQEYGQAYYHLLVENLSRITVVKDLLMENPDIKIHADLAIVPPSTVCGKPNAAMVNLLRHHLLQFNLEDFPRVQLVGRTGLYPHTGGVPPVPPRPVIVLVVRVKKRGLQNNAEVREALVQNFPDFDVVEFDGVDHIRAQLGMFATASMIVGPHGAGLSNMVVSPLHTMILEIGPIDCPACYVNLAIKLQHIYARHTGSDRGDDPCDSWYEPNVDEVVSLAR 1498
N V VAPNSC STEKASLTNTRHRPDTESFEKVVVLAQEYGQAYYHLLVENLSRITVVKD+LMENPD+KIHADLAIVPPSTVCGKPNAAMVNLLRHHLLQFNLE+FPRVQLVGR G+YPHTGGVPPVPPRPVIVLVVRVKKRGLQNNAEVREAL QNFPDFDVVEF+GV+HIRAQLGMFATASMIVGPHGAGLSNMVVSPLHTMILEIGPIDCPACYVNLAIKLQHIYARHTGSD GDDPCDSWYEPNVDEVVSLAR
Sbjct: 240 NDKVFVAPNSCRSTEKASLTNTRHRPDTESFEKVVVLAQEYGQAYYHLLVENLSRITVVKDVLMENPDVKIHADLAIVPPSTVCGKPNAAMVNLLRHHLLQFNLENFPRVQLVGRPGMYPHTGGVPPVPPRPVIVLVVRVKKRGLQNNAEVREALAQNFPDFDVVEFNGVEHIRAQLGMFATASMIVGPHGAGLSNMVVSPLHTMILEIGPIDCPACYVNLAIKLQHIYARHTGSDPGDDPCDSWYEPNVDEVVSLAR 497
BLAST of mRNA_E-siliculosus-1a_F_contig1004.89.1 vs. uniprot
Match: D7FKP0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKP0_ECTSI) HSP 1 Score: 342 bits (878), Expect = 4.300e-110 Identity = 180/294 (61.22%), Postives = 202/294 (68.71%), Query Frame = 2 Query: 725 NRYVLVAPNSCLSTEKASLTNT---RHRPDTESFEKVVVLAQEYGQAYYHLLVENLSRITVVKDLLMENPDIK---------------------------------IHADLAIVPPSTVCGKPNAAMVNLLRHHLLQFNLEDFPRVQLVGRTGLYPHTGGVPPVPPRPVIVLVVRVKKRGLQNNAEVREALVQNFPDFDVVEFDGVDHIRAQLGMFATASMIVGPHGAGLSNMVVSPLHTMILEIGPIDCPACYVNLAIKLQHIYARHTGSDRGDDPCDSWYEPNVDEVVSLAR 1498
N LVAPNSC S+ A NT R RP KVVVL QEYG AYYHLLVENLSRIT+V D+L+ENPDIK IHADLA+VPP+TVCGKPNA +V LLRH LLQ G+YP TGGVPP PP+P++VL+VR KRGL NN EVR+AL+QNFPD DVVEF G D IR QL +FATAS+IV PHGAGL+N+VVSPLHTMILEIGPI+CP CYVN+AIKLQHIYARH GSDR DD C SWYEPNVDE+V+L R
Sbjct: 141 NDQDLVAPNSCRSSVNARDVNTHETRLRPGEARHGKVVVLTQEYGLAYYHLLVENLSRITIVLDMLLENPDIKVAVHSISESHREYIYGLFELLGISQDRVLFIHKIHADLALVPPATVCGKPNAVLVTLLRHALLQ---------------GMYPDTGGVPPTPPKPIMVLIVRKNKRGLGNNTEVRDALIQNFPDHDVVEFFGTDPIREQLDLFATASVIVAPHGAGLANIVVSPLHTMILEIGPIECPTCYVNMAIKLQHIYARHAGSDRWDDDCSSWYEPNVDEIVNLVR 419
BLAST of mRNA_E-siliculosus-1a_F_contig1004.89.1 vs. uniprot
Match: A0A6H5JMF5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMF5_9PHAE) HSP 1 Score: 321 bits (823), Expect = 2.380e-101 Identity = 175/331 (52.87%), Postives = 198/331 (59.82%), Query Frame = 2 Query: 737 LVAPNSCLST---EKASLTNTRHRPDTESFEKVVVLAQEYGQAYYHLLVENLSRITVVKDLLMENPDIK--------------------------------------------------------------------------IHADLAIVPPSTVCGKPNAAMVNLLRHHLLQFNLEDFPRVQLVGRTGLYPHTGGVPPVPPRPVIVLVVRVKKRGLQNNAEVREALVQNFPDFDVVEFDGVDHIRAQLGMFATASMIVGPHGAGLSNMVVSPLHTMILEIGPIDCPACYVNLAIKLQHIYARHTGSDRGDDPCDSWYEPNVDEVVSLAR 1498
LVAPNSC S TR P KVVVL QEYG AYYHLLVENLSRIT+V D+L+ENPDIK IHADLA+VPP+TVCGKPNA +V LLRH LLQ G+YP TGGVPP+PP+P++VL+VR KRGL NN EVR+AL+QNFPD DVVEF G D IR QL +FATAS+IV PHGAGL+N+VVSPLHTM+LEIGPI+CP CYVN+AIKLQHIYARH GSDR DD C SWYEPNVDE+V+L R
Sbjct: 147 LVAPNSCQSLVNGRNVDTNETRLGPGEARHGKVVVLTQEYGLAYYHLLVENLSRITIVLDVLLENPDIKVAQFSFLFFRAGTYACDQLHDDPMPSTCRLVKSCSRPLIFTVEKHAKVELLREYIYGLFELLGISQERVMFIEKIHADLALVPPATVCGKPNAVLVTLLRHALLQ---------------GMYPDTGGVPPIPPKPIMVLIVRANKRGLGNNDEVRDALIQNFPDHDVVEFFGTDPIREQLELFATASVIVAPHGAGLANIVVSPLHTMVLEIGPIECPTCYVNMAIKLQHIYARHAGSDRWDDDCSSWYEPNVDEIVNLVR 462
BLAST of mRNA_E-siliculosus-1a_F_contig1004.89.1 vs. uniprot
Match: D7FWK4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWK4_ECTSI) HSP 1 Score: 264 bits (675), Expect = 1.280e-79 Identity = 145/311 (46.62%), Postives = 184/311 (59.16%), Query Frame = 2 Query: 713 RQGA--NRYVLVAPNSCL-----STEKASLTNTRHRPD-TESFEKVVVLAQEYGQAYYHLLVENLSRITVVKDLLMENPDI-----------------------------------------KIHADLAIVPPSTVCGKPNAAMVNLLRHHLLQFNLEDFPRVQLVGRTGLYPHTGGVPPVPPRPVIVLVVRVKKRGLQNNAEVREALVQNFPDFDVVEFDGVDHIRAQLGMFATASMIVGPHGAGLSNMVVSPLHTMILEIGPIDCPACYVNLAIKLQHIYARHTGSDRGDDPCDSWYEPNVDEVVSLAR 1498
R+GA N + +AP +C E A L T P ES+EKV V+AQE+G YYH VE+L RIT+ D+L++NPDI ++HA+LAIVP +T+CG P+ MVN+LR+ LQ L+P TGGVPPVPPRPVIVL+VR RGL+NN EVREAL NF FDVVEF G D +R QL +FATA+MI+ PHGAGL+NM+V+PLHT +LEI P++CP C++ LA KL HIYARHT D C++WY P VD ++ LAR
Sbjct: 124 RKGAVWNEHDFIAPVNCARFTKDEAEDALLEATGDVPRYVESYEKVFVMAQEWGPNYYHFTVEHLPRITLALDILIDNPDIMIVMRHHGQDKWHDTSTEFETHMELFELIGISRERVVDTSHEVHANLAIVPTTTICGDPDPHMVNMLRNRFLQ---------------SLFPDTGGVPPVPPRPVIVLIVRSNIRGLENNNEVREALEMNFTSFDVVEFFGTDPVRDQLKIFATAAMIIAPHGAGLANMIVAPLHTPVLEIAPLECPPCFLRLAFKLHHIYARHTAGDEWTISCNTWYNPGVDGIIDLAR 419
BLAST of mRNA_E-siliculosus-1a_F_contig1004.89.1 vs. uniprot
Match: A0A6H5L2R1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2R1_9PHAE) HSP 1 Score: 245 bits (626), Expect = 1.520e-74 Identity = 130/265 (49.06%), Postives = 161/265 (60.75%), Query Frame = 2 Query: 833 LAQEYGQAYYHLLVENLSRITVVKDLLMENPDIKI-------------------------------------------HADLAIVPPSTVCGKPNAAMVNLLRHHLLQFNLEDFPRVQLVGRTGLYPHTGGVPPVPPRPVIVLVVRVKKRGLQNNAEVREALVQNFPDFDVVEFDGVDHIRAQLGMFATASMIVGPHGAGLSNMVVSPLHTMILEIGPIDCPACYVNLAIKLQHIYARHTGSDRGDDPCDSWYEPNVDEVVSLAR 1498
+ QE+ YYH VE+L RITV D+L+ENP+IKI HA+LAIVP ST+CG P+A MVN+LR+ LLQ GL+P T GVPP P RPVIVLVVR RGL+NN EV+EAL NFP FDVVEF G D +R QL FA ASM++ PHGAGL+NM+V+PLHT +LEI P+ CP+C++ LA+KL HIYARH G + + C +WYEP++DEVV L R
Sbjct: 1 MTQEWNPNYYHFTVEHLPRITVALDILLENPEIKIAMHYSQHDKLHKGGLSNEIETHMEMFEILGISRDRVVLAMKQMHAELAIVPTSTMCGDPDAHMVNMLRNRLLQ---------------GLFPTTNGVPPAPARPVIVLVVRTTLRGLKNNDEVKEALKINFPSFDVVEFFGTDPVRDQLLTFAKASMVIAPHGAGLANMIVAPLHTPVLEIAPLSCPSCFLRLALKLHHIYARHPGGEWSQE-CHTWYEPDIDEVVDLVR 249
BLAST of mRNA_E-siliculosus-1a_F_contig1004.89.1 vs. uniprot
Match: D8LIQ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIQ4_ECTSI) HSP 1 Score: 252 bits (643), Expect = 3.720e-74 Identity = 133/269 (49.44%), Postives = 165/269 (61.34%), Query Frame = 2 Query: 815 FEKVVVLAQEYGQAYYHLLVENLSRITVVKDLLMENPDI-----------------------------------------KIHADLAIVPPSTVCGKPNAAMVNLLRHHLLQFNLEDFPRVQLVGRTGLYPHTGGVPPVPPRPVIVLVVRVKKRGLQNNAEVREALVQNFPDFDVVEFDGVDHIRAQLGMFATASMIVGPHGAGLSNMVVSPLHTMILEIGPIDCPACYVNLAIKLQHIYARHTGSDRGDDPCDSWYEPNVDEVVSLAR 1498
+EKV V+ Q++G YYH VE+L RIT+ D+L+ NPDI +IHADL IVP +TVCG P+A MVN+LR+ LQ GL+P T GVPP PPRPVIVLVVR RGL+NN EVREAL NFP FDVVEF G D +R QL FA+A+MI+ PHGAGL+NMVV+PLHT +LEI PI CP C++ LA+KL H+YARH G + C +WY+ +VDE+V+LAR
Sbjct: 226 YEKVFVMTQDWGPNYYHFTVEHLPRITLALDILLRNPDIMIAVHFHDTDHWHDTSTELEAHMGMFEILGISRERIILVKTRIHADLVIVPTTTVCGDPDAHMVNMLRNRFLQ---------------GLFPTTDGVPPAPPRPVIVLVVRTTLRGLKNNEEVREALEMNFPSFDVVEFFGTDPVRDQLKTFASAAMIIAPHGAGLANMVVAPLHTPVLEIAPIRCPPCFLRLALKLHHVYARHPGG-KWTKRCQTWYKTDVDEIVTLAR 478
BLAST of mRNA_E-siliculosus-1a_F_contig1004.89.1 vs. uniprot
Match: A0A6H5JM62_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM62_9PHAE) HSP 1 Score: 243 bits (620), Expect = 1.160e-73 Identity = 135/263 (51.33%), Postives = 162/263 (61.60%), Query Frame = 2 Query: 821 KVVVLAQEYGQAYYHLLVENLSRITVVKDLLMENPDIK-------------------------------------IHADLAIVPPSTVCGKPNAAMVNLLRHHLLQFNLEDFPRVQLVGRTGLYPHTGGVPPVPPRPVIVLVVRVKKRGLQNNAEVREALVQNFPDFDVVEFDGVDHIRAQLGMFATASMIVGPHGAGLSNMVVSPLHTMILEIGPIDCPACYVNLAIKLQHIYARHTGSDRGDDPCDSWYEPNVDEVVSLAR 1498
KVVV+AQ +G YYH LVE L RIT++ D+L+EN DIK IHADLAI+P ST CG+P+ MVN+LR LL+ +YP T G+PP PRPVIVLVVR +R L+NN +VREAL Q FPD D+VEF G+ I Q+ +FATAS+IV PHGAGLSNMV SPLHT +LEIG DC ACY++LA+KLQH+YARH G+ C S YEPNVDEVV L R
Sbjct: 6 KVVVIAQYWGDEYYHFLVEALPRITLMLDVLVENLDIKVAVHAPKPGSESHTTYIYELLALLGIESERVIFIQTEIHADLAILPSSTPCGRPDTQMVNMLRSVLLK---------------AMYPRTRGIPPQVPRPVIVLVVRESRRWLKNNDQVREALKQYFPDHDIVEFWGIGPIIRQMQLFATASVIVAPHGAGLSNMVASPLHTPVLEIGSPDCSACYLHLALKLQHVYARHPGTKERRTACASAYEPNVDEVVRLVR 253
BLAST of mRNA_E-siliculosus-1a_F_contig1004.89.1 vs. uniprot
Match: A0A6H5L311_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L311_9PHAE) HSP 1 Score: 249 bits (635), Expect = 2.350e-71 Identity = 132/274 (48.18%), Postives = 164/274 (59.85%), Query Frame = 2 Query: 803 DTESFEKVVVLAQEYGQAYYHLLVENLSRITVVKDLLMENPDI------------------------------------------KIHADLAIVPPSTVCGKPNAAMVNLLRHHLLQFNLEDFPRVQLVGRTGLYPHTGGVPPVPPRPVIVLVVRVKKRGLQNNAEVREALVQNFPDFDVVEFDGVDHIRAQLGMFATASMIVGPHGAGLSNMVVSPLHTMILEIGPIDCPACYVNLAIKLQHIYARHTGSDRGDDPCDSWYEPNVDEVVSLAR 1498
D E ++KV V+AQE+ YYH E+L RIT++ D+L++NPDI ++HA+LAI+P STVCG P+ MVN+LR+ LQ GL+P T GVPP PPRP IVLVVR RGLQNN EV+EAL +FP FDVVEF G D + Q FATA+MIV PHGAGL+N++V+PLHT +LEI PI CP C++ LA+KL HIYARH G D C SWYEP VDE++ LAR
Sbjct: 401 DPERYDKVFVMAQEWSPNYYHFTAEHLPRITLMLDVLLDNPDIIISMHFYEKDIIHENISAVHEVQMEMLEILGISRERVVLVDQQMHANLAIIPTSTVCGDPDPHMVNMLRNRFLQ---------------GLFPTTNGVPPAPPRPTIVLVVRTTLRGLQNNEEVKEALKISFPSFDVVEFFGTDPVGHQFKTFATAAMIVAPHGAGLANIIVAPLHTPVLEIAPISCPPCFLRLALKLHHIYARHPG-DHWSQECMSWYEPPVDEIIELAR 658
BLAST of mRNA_E-siliculosus-1a_F_contig1004.89.1 vs. uniprot
Match: A0A6H5JZT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZT9_9PHAE) HSP 1 Score: 248 bits (632), Expect = 6.520e-71 Identity = 131/269 (48.70%), Postives = 166/269 (61.71%), Query Frame = 2 Query: 815 FEKVVVLAQEYGQAYYHLLVENLSRITVVKDLLMENPDI-----------------------------------------KIHADLAIVPPSTVCGKPNAAMVNLLRHHLLQFNLEDFPRVQLVGRTGLYPHTGGVPPVPPRPVIVLVVRVKKRGLQNNAEVREALVQNFPDFDVVEFDGVDHIRAQLGMFATASMIVGPHGAGLSNMVVSPLHTMILEIGPIDCPACYVNLAIKLQHIYARHTGSDRGDDPCDSWYEPNVDEVVSLAR 1498
+EKV V+ Q++G YYH VE+L RIT+ D+L+EN +I +I+ADL IVP +TVCG P+A MVN+LR+ LQ GL+P T GVPP PPRPVIVLVVR RGL+NN EVREAL NFP FDVVEF G D +R QL FATA+MI+ PHGAGL+N+VV+PLHT +LEI PI CP C++ L++KL H+YARH G + C +WY+P+VDE+V+LAR
Sbjct: 398 YEKVFVMTQDWGPNYYHFTVEHLPRITLALDILLENSEIMIAVHYHDTDKWHDTSTELEAHMGMFEILGISRERIILVKTRIYADLVIVPTTTVCGDPDAHMVNMLRNRFLQ---------------GLFPTTNGVPPAPPRPVIVLVVRTTLRGLKNNDEVREALQINFPSFDVVEFFGTDPVRDQLKTFATAAMIIAPHGAGLANVVVAPLHTPVLEIAPIRCPPCFLRLSLKLHHVYARHPGG-KWKKRCQTWYKPDVDEIVTLAR 650
BLAST of mRNA_E-siliculosus-1a_F_contig1004.89.1 vs. uniprot
Match: D7FWK6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWK6_ECTSI) HSP 1 Score: 245 bits (626), Expect = 4.210e-70 Identity = 128/275 (46.55%), Postives = 166/275 (60.36%), Query Frame = 2 Query: 803 DTESFEKVVVLAQEYGQAYYHLLVENLSRITVVKDLLMENPDIKI-------------------------------------------HADLAIVPPSTVCGKPNAAMVNLLRHHLLQFNLEDFPRVQLVGRTGLYPHTGGVPPVPPRPVIVLVVRVKKRGLQNNAEVREALVQNFPDFDVVEFDGVDHIRAQLGMFATASMIVGPHGAGLSNMVVSPLHTMILEIGPIDCPACYVNLAIKLQHIYARHTGSDRGDDPCDSWYEPNVDEVVSLAR 1498
+ ES+EKV V+ QE+ YYH VE+L RIT++ D+L+ENPDI I HA+LAIVP ST+CG P+A MVN+LR+ LQ L+P T GVPP RPVIVLVVR RGL+NN EV+EAL NFP FDVVEF G D ++ QL FA ASM++ PHGAGL+N++V+PLHT +LEI P+ CP+C++ LA+KL HIYARH G + + C +WYEP++DE++ L R
Sbjct: 385 EDESYEKVFVMTQEWNPNYYHFTVEHLPRITLMLDVLLENPDIMIAMHYSQHDKLHQGGFSNEIETHMEMFEILGISRDRVVLAMKQMHAELAIVPTSTICGDPDAHMVNMLRNRFLQ---------------SLFPTTNGVPPAQARPVIVLVVRTTLRGLKNNDEVKEALEINFPSFDVVEFFGTDPVQDQLLTFANASMVIAPHGAGLANIIVAPLHTPVLEIAPLSCPSCFLRLALKLHHIYARHPGGEWSQE-CHTWYEPDIDEIIDLVR 643 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1004.89.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1004.89.1 >prot_E-siliculosus-1a_F_contig1004.89.1 ID=prot_E-siliculosus-1a_F_contig1004.89.1|Name=mRNA_E-siliculosus-1a_F_contig1004.89.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=242bp MVWQAATQRRPLASSAVAAPWTERRRGKLDLSRGILFLLLLASQLGHVPRback to top mRNA from alignment at E-siliculosus-1a_F_contig1004:1395..11132+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1004.89.1 ID=mRNA_E-siliculosus-1a_F_contig1004.89.1|Name=mRNA_E-siliculosus-1a_F_contig1004.89.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=9738bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1004:1395..11132+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1004:1395..11132+ >mRNA_E-siliculosus-1a_F_contig1004.89.1 ID=mRNA_E-siliculosus-1a_F_contig1004.89.1|Name=mRNA_E-siliculosus-1a_F_contig1004.89.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1452bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1004:1395..11132+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |