mRNA_E-siliculosus-1a_F_contig10023.82.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10023.82.1 vs. uniprot
Match: A0A6H5L771_9PHAE (P4Hc domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L771_9PHAE) HSP 1 Score: 132 bits (331), Expect = 1.360e-34 Identity = 58/59 (98.31%), Postives = 59/59 (100.00%), Query Frame = 1 Query: 25 QAAFFSYLGPDNKTDKGRTRHSGCPIIEGTKWIATLWMRMGVTAEKSWQHYDPSGLPSA 201 QAAFFSYLGPDNKTDKGRTRHSGCPIIEGTKWIATLWMRMGVTAEKSWQ+YDPSGLPSA Sbjct: 406 QAAFFSYLGPDNKTDKGRTRHSGCPIIEGTKWIATLWMRMGVTAEKSWQYYDPSGLPSA 464
BLAST of mRNA_E-siliculosus-1a_F_contig10023.82.1 vs. uniprot
Match: A0A835YYR1_9STRA (Fe2OG dioxygenase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYR1_9STRA) HSP 1 Score: 90.5 bits (223), Expect = 1.220e-19 Identity = 40/58 (68.97%), Postives = 45/58 (77.59%), Query Frame = 1 Query: 25 QAAFFSYLGPD-NKTDKGRTRHSGCPIIEGTKWIATLWMRMGVTAEKSWQHYDPSGLP 195 QAAFF+Y + N TD GRTRHSGCPII GTKWIATLWMR GV+ KS+ H+DP G P Sbjct: 433 QAAFFAYYDKERNVTDSGRTRHSGCPIISGTKWIATLWMRNGVSKAKSYMHFDPEGRP 490
BLAST of mRNA_E-siliculosus-1a_F_contig10023.82.1 vs. uniprot
Match: A0A7S0SW76_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SW76_9STRA) HSP 1 Score: 83.6 bits (205), Expect = 1.290e-18 Identity = 33/55 (60.00%), Postives = 40/55 (72.73%), Query Frame = 1 Query: 28 AAFFSYLGPDNKTDKGRTRHSGCPIIEGTKWIATLWMRMGVTAEKSWQHYDPSGL 192 A FFSY GPD + D+G T HSGCP+IEG KWI TLWMR GV+ + W +DP G+ Sbjct: 105 ATFFSYKGPDGRMDEGYTEHSGCPVIEGEKWITTLWMREGVSYYEPWTMFDPQGV 159
BLAST of mRNA_E-siliculosus-1a_F_contig10023.82.1 vs. uniprot
Match: A0A836CGT5_9STRA (P4Hc domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGT5_9STRA) HSP 1 Score: 86.3 bits (212), Expect = 3.500e-18 Identity = 36/58 (62.07%), Postives = 42/58 (72.41%), Query Frame = 1 Query: 25 QAAFFSYLGPDN-KTDKGRTRHSGCPIIEGTKWIATLWMRMGVTAEKSWQHYDPSGLP 195 QA FFSY + + D GRTRHSGCP+IEGTKWIATLWMR GV+ W+ +DP G P Sbjct: 373 QAVFFSYYDSEKERVDNGRTRHSGCPVIEGTKWIATLWMRKGVSKSVPWERFDPQGRP 430
BLAST of mRNA_E-siliculosus-1a_F_contig10023.82.1 vs. uniprot
Match: A0A7S3XMW1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XMW1_HETAK) HSP 1 Score: 84.3 bits (207), Expect = 5.500e-18 Identity = 35/57 (61.40%), Postives = 41/57 (71.93%), Query Frame = 1 Query: 28 AAFFSYLGPDNKTDKGRTRHSGCPIIEGTKWIATLWMRMGVTAEKSWQHYDPSGLPS 198 A FFSY+G D + D G T HSGCPI EG KWIATLWMR GV+ E W +DP+G P+ Sbjct: 239 ATFFSYIGDDGEWDDGLTLHSGCPIKEGEKWIATLWMRQGVSDEAPWSSFDPAGNPA 295
BLAST of mRNA_E-siliculosus-1a_F_contig10023.82.1 vs. uniprot
Match: A0A7R9U6N7_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U6N7_9STRA) HSP 1 Score: 81.3 bits (199), Expect = 2.070e-16 Identity = 33/58 (56.90%), Postives = 40/58 (68.97%), Query Frame = 1 Query: 22 LQAAFFSYLGPDNKTDKGRTRHSGCPIIEGTKWIATLWMRMGVTAEKSWQHYDPSGLP 195 L + FFSYLGPD + D G T HSGCPI EG+K+IAT+W R GV++ W DP G P Sbjct: 381 LDSVFFSYLGPDGRMDDGLTEHSGCPITEGSKYIATMWFRKGVSSAWPWTKSDPQGYP 438
BLAST of mRNA_E-siliculosus-1a_F_contig10023.82.1 vs. uniprot
Match: A0A6U4DUF5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4DUF5_9STRA) HSP 1 Score: 78.6 bits (192), Expect = 1.870e-15 Identity = 31/58 (53.45%), Postives = 40/58 (68.97%), Query Frame = 1 Query: 28 AAFFSYLGPDNKTDKGRTRHSGCPIIEGTKWIATLWMRMGVTAEKSWQHYDPSGLPSA 201 + FFSY+G D + D G T HSGCPI EG+K+IAT+W R GV+ ++ W DP G P A Sbjct: 398 SVFFSYMGQDGRMDDGLTEHSGCPIFEGSKFIATMWFRKGVSKDRKWFQSDPLGYPKA 455
BLAST of mRNA_E-siliculosus-1a_F_contig10023.82.1 vs. uniprot
Match: A0A8J2WTQ6_9STRA (Hypothetical protein n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WTQ6_9STRA) HSP 1 Score: 73.9 bits (180), Expect = 8.390e-14 Identity = 29/55 (52.73%), Postives = 38/55 (69.09%), Query Frame = 1 Query: 28 AAFFSYL-GPDNKTDKGRTRHSGCPIIEGTKWIATLWMRMGVTAEKSWQHYDPSG 189 A FFSYL + D G T HSGCP++EG KW+ TLW R GV+A + W+ +DP+G Sbjct: 535 AVFFSYLDAASGRMDVGHTLHSGCPVVEGDKWVLTLWFRKGVSAAEPWERFDPTG 589
BLAST of mRNA_E-siliculosus-1a_F_contig10023.82.1 vs. uniprot
Match: A0A7S2CQI0_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CQI0_9STRA) HSP 1 Score: 66.2 bits (160), Expect = 1.880e-12 Identity = 28/60 (46.67%), Postives = 34/60 (56.67%), Query Frame = 1 Query: 13 PLNLQAAFFSYLGPDN-KTDKGRTRHSGCPIIEGTKWIATLWMRMGVTAEKSWQHYDPSG 189 P A FSY P D G T HSGCP++ GTKW+ T WMR+GV + W DP+G Sbjct: 52 PRATDAVLFSYYDPKTGDMDTGLTEHSGCPVMAGTKWVITEWMRLGVGKDNPWTSSDPTG 111
BLAST of mRNA_E-siliculosus-1a_F_contig10023.82.1 vs. uniprot
Match: A0A7S3NFK8_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NFK8_9STRA) HSP 1 Score: 70.1 bits (170), Expect = 1.890e-12 Identity = 30/60 (50.00%), Postives = 38/60 (63.33%), Query Frame = 1 Query: 13 PLNLQAAFFSYLG-PDNKTDKGRTRHSGCPIIEGTKWIATLWMRMGVTAEKSWQHYDPSG 189 P A FFSY D G+T HSGCP++EG K++ATLW+R GV+ SW YDP+G Sbjct: 441 PQPNDAVFFSYFDMTSGLMDTGQTTHSGCPVLEGDKFVATLWLRKGVSKTDSWTQYDPTG 500 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10023.82.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10023.82.1 >prot_E-siliculosus-1a_F_contig10023.82.1 ID=prot_E-siliculosus-1a_F_contig10023.82.1|Name=mRNA_E-siliculosus-1a_F_contig10023.82.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=68bp TPHPPLNLQAAFFSYLGPDNKTDKGRTRHSGCPIIEGTKWIATLWMRMGVback to top mRNA from alignment at E-siliculosus-1a_F_contig10023:3..206+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig10023.82.1 ID=mRNA_E-siliculosus-1a_F_contig10023.82.1|Name=mRNA_E-siliculosus-1a_F_contig10023.82.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=204bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10023:3..206+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10023:3..206+ >mRNA_E-siliculosus-1a_F_contig10023.82.1 ID=mRNA_E-siliculosus-1a_F_contig10023.82.1|Name=mRNA_E-siliculosus-1a_F_contig10023.82.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=408bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10023:3..206+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |