mRNA_E-siliculosus-1a_F_contig1002.79.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1002.79.1 vs. uniprot
Match: D7FI89_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI89_ECTSI) HSP 1 Score: 95.1 bits (235), Expect = 1.420e-24 Identity = 44/55 (80.00%), Postives = 47/55 (85.45%), Query Frame = 1 Query: 1 GYDGGDCCECTCEVGNPWDDDDDSTCSHQNYGFACIDPAAPCVDDDDITAVMVEN 165
GYDGGDCCECTCE +PWDDD+D CS GFACIDPAAPCV+DDDITAVMVEN
Sbjct: 3 GYDGGDCCECTCE--SPWDDDNDWLCSSDGSGFACIDPAAPCVEDDDITAVMVEN 55
BLAST of mRNA_E-siliculosus-1a_F_contig1002.79.1 vs. uniprot
Match: A0A6H5JM92_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM92_9PHAE) HSP 1 Score: 89.0 bits (219), Expect = 2.530e-19 Identity = 43/60 (71.67%), Postives = 45/60 (75.00%), Query Frame = 1 Query: 1 GYDGGDCCECTCEV-----GNPWDDDDDSTCSHQNYGFACIDPAAPCVDDDDITAVMVEN 165
GYDGGDCCECTC +PWDDDDD CS GFACIDPAAPCV+DDDITA MVEN
Sbjct: 74 GYDGGDCCECTCVACKKHGQSPWDDDDDWLCSSGGSGFACIDPAAPCVEDDDITADMVEN 133
BLAST of mRNA_E-siliculosus-1a_F_contig1002.79.1 vs. uniprot
Match: D7FI87_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI87_ECTSI) HSP 1 Score: 87.4 bits (215), Expect = 8.770e-19 Identity = 39/55 (70.91%), Postives = 43/55 (78.18%), Query Frame = 1 Query: 1 GYDGGDCCECTCEVGNPWDDDDDSTCSHQNYGFACIDPAAPCVDDDDITAVMVEN 165
GYDGGDCCECTC+ NPW DDD+ CS YGFACIDP APCVDDDDIT + +N
Sbjct: 44 GYDGGDCCECTCQ--NPWGDDDEWFCSKDGYGFACIDPDAPCVDDDDITIEIAQN 96
BLAST of mRNA_E-siliculosus-1a_F_contig1002.79.1 vs. uniprot
Match: A0A6H5JXR2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXR2_9PHAE) HSP 1 Score: 82.0 bits (201), Expect = 6.930e-17 Identity = 38/55 (69.09%), Postives = 40/55 (72.73%), Query Frame = 1 Query: 1 GYDGGDCCECTCEVGNPWDDDDDSTCSHQNYGFACIDPAAPCVDDDDITAVMVEN 165
GYDGGDCCECTC NPW DDDD CS GFACIDP A CVDDDDIT + +N
Sbjct: 20 GYDGGDCCECTCV--NPWGDDDDWVCSKDGSGFACIDPDASCVDDDDITVEIAQN 72
BLAST of mRNA_E-siliculosus-1a_F_contig1002.79.1 vs. uniprot
Match: D7G3F4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F4_ECTSI) HSP 1 Score: 79.0 bits (193), Expect = 8.260e-16 Identity = 40/57 (70.18%), Postives = 42/57 (73.68%), Query Frame = 1 Query: 1 GYDGGDCCECTCEVGNP--WDDDDDSTCSHQNYGFACIDPAAPCVDDDDITAVMVEN 165
GYDGGDCCECTCE +P WDDD D C FACIDP+APCVDDDDIT MVEN
Sbjct: 214 GYDGGDCCECTCEYESPYDWDDDWDYHCME----FACIDPSAPCVDDDDITVDMVEN 266
BLAST of mRNA_E-siliculosus-1a_F_contig1002.79.1 vs. uniprot
Match: D7FI92_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI92_ECTSI) HSP 1 Score: 65.9 bits (159), Expect = 3.650e-13 Identity = 36/56 (64.29%), Postives = 39/56 (69.64%), Query Frame = 1 Query: 1 GYDGGDCCECTCEVGNP-WDDDDDSTCSHQNYGFACIDPAAPCVDDDDITAVMVEN 165
GYDGGDCCECTC+V N W + +Y FACID APCVDDDDITA MVEN
Sbjct: 8 GYDGGDCCECTCQVTNSGWG-------CNPDY-FACIDLEAPCVDDDDITAEMVEN 55
BLAST of mRNA_E-siliculosus-1a_F_contig1002.79.1 vs. uniprot
Match: D7G0S4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S4_ECTSI) HSP 1 Score: 70.1 bits (170), Expect = 7.040e-13 Identity = 36/55 (65.45%), Postives = 41/55 (74.55%), Query Frame = 1 Query: 1 GYDGGDCCECTCEVGNPWDDDDDSTCSHQNYGFACIDPAAPCVDDDDITAVMVEN 165
GYDGGDCCECTC N WDDD +C+ + ACIDP+APCVDDDD+T MVEN
Sbjct: 76 GYDGGDCCECTCV--NAWDDD--YSCAANS---ACIDPSAPCVDDDDVTVDMVEN 123
BLAST of mRNA_E-siliculosus-1a_F_contig1002.79.1 vs. uniprot
Match: A0A6H5KB04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB04_9PHAE) HSP 1 Score: 69.3 bits (168), Expect = 2.050e-12 Identity = 36/57 (63.16%), Postives = 38/57 (66.67%), Query Frame = 1 Query: 1 GYDGGDCCECTCEVGNP--WDDDDDSTCSHQNYGFACIDPAAPCVDDDDITAVMVEN 165
GYDGGDCCECTCE +P WDDD D C F+CIDP A CV DDDIT M EN
Sbjct: 114 GYDGGDCCECTCEYESPYDWDDDWDYHCRE----FSCIDPNAACVSDDDITVDMFEN 166
BLAST of mRNA_E-siliculosus-1a_F_contig1002.79.1 vs. uniprot
Match: A0A6H5K2J7_9PHAE (LNR domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2J7_9PHAE) HSP 1 Score: 66.2 bits (160), Expect = 2.690e-12 Identity = 35/55 (63.64%), Postives = 41/55 (74.55%), Query Frame = 1 Query: 1 GYDGGDCCECTCEVGNPWDDDDDSTCSHQNYGFACIDPAAPCVDDDDITAVMVEN 165
GYDGGDCCECTC+ + DDD S +++Y ACIDP A CVDDDD+TA MVEN
Sbjct: 51 GYDGGDCCECTCQTQS--DDDYYSWGCNKDY-MACIDPDASCVDDDDVTAEMVEN 102
BLAST of mRNA_E-siliculosus-1a_F_contig1002.79.1 vs. uniprot
Match: D7G4F9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4F9_ECTSI) HSP 1 Score: 68.6 bits (166), Expect = 3.800e-12 Identity = 35/57 (61.40%), Postives = 41/57 (71.93%), Query Frame = 1 Query: 1 GYDGGDCCECTCEV--GNPWDDDDDSTCSHQNYGFACIDPAAPCVDDDDITAVMVEN 165
GYDGGDCCECTCEV + WD+D C GFACIDP+APCV+DDDIT + E+
Sbjct: 124 GYDGGDCCECTCEVPTDDDWDNDLYVACGE---GFACIDPSAPCVNDDDITVDVDES 177 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1002.79.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1002.79.1 >prot_E-siliculosus-1a_F_contig1002.79.1 ID=prot_E-siliculosus-1a_F_contig1002.79.1|Name=mRNA_E-siliculosus-1a_F_contig1002.79.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=55bp GYDGGDCCECTCEVGNPWDDDDDSTCSHQNYGFACIDPAAPCVDDDDITAback to top mRNA from alignment at E-siliculosus-1a_F_contig1002:18785..20351+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1002.79.1 ID=mRNA_E-siliculosus-1a_F_contig1002.79.1|Name=mRNA_E-siliculosus-1a_F_contig1002.79.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1567bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1002:18785..20351+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1002:18785..20351+ >mRNA_E-siliculosus-1a_F_contig1002.79.1 ID=mRNA_E-siliculosus-1a_F_contig1002.79.1|Name=mRNA_E-siliculosus-1a_F_contig1002.79.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=330bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1002:18785..20351+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |