mRNA_E-siliculosus-1a_F_contig1002.78.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1002.78.1 vs. uniprot
Match: A0A6H5JG38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG38_9PHAE) HSP 1 Score: 207 bits (528), Expect = 2.860e-62 Identity = 99/129 (76.74%), Postives = 108/129 (83.72%), Query Frame = 2 Query: 620 DDSLQFAAMRDPRAVAVSTHFHVNSHTEENIGHPSLVKSLDEAVLLILPQICQFTTIRHILFDGQLSDRSKIFWYEDAMRDPLGWHYRWASFAGFTLPARWIEDIHATLPEWQQDAHRDPHPSGQDKAS 1006
DDSLQFA +RDPRAVAVST+F+V SH H S KSLDEAVLLILPQ+CQFTTIRH+LFDGQLSD+S+IFWYEDAMRDPLGWHYRWASFAGF LPA WI+DI ATLPE QQ RDPHP GQ +S
Sbjct: 27 DDSLQFAVLRDPRAVAVSTYFYVKSHPAFYSDHVSRGKSLDEAVLLILPQLCQFTTIRHLLFDGQLSDKSEIFWYEDAMRDPLGWHYRWASFAGFALPASWIKDIDATLPEAQQKVKRDPHPGGQQVSS 155
BLAST of mRNA_E-siliculosus-1a_F_contig1002.78.1 vs. uniprot
Match: A0A6H5KDV7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDV7_9PHAE) HSP 1 Score: 207 bits (526), Expect = 1.590e-61 Identity = 105/218 (48.17%), Postives = 136/218 (62.39%), Query Frame = 2 Query: 431 ISRVEVAASTRFKHSFPVPDSCRWKHDAGIAKVGEGCGSVNGRPVENASDLWLCMEEASCEYSDDSLQFAAMRDPRAVAVSTHFHVNSHTEENIGHPSLVKSLDEAVLLILPQICQFTTIRHILFDGQLSDRSKIFWYEDAMRDPLGWHYRWASFAGFTLPARWIEDIHATLPEWQQDAHRDPHPSG---------QDKAST-VRPTGGVVSCVNPWL 1054
+ RVE++ ST KH PV +SC W H +G G+GC S +G PVE +DLW CM++ CE +D+ LQF +RDPRAVAVST+FH H + N + L SLD+ VL ILP +C FTT+RHILF G LS+R+++FWYE + DP WHYRWASFAG LP WI+ + A E Q H +PHP G QD+ S +RP + S + WL
Sbjct: 2 LRRVEISISTVDKHRLPVNESCPWSHGSGTVHEGDGCWSFDGHPVETGADLWACMQKTPCEITDNRLQFVPIRDPRAVAVSTYFH-RVHKDNN--YQKLHPSLDQTVLEILPVLCHFTTLRHILFGGLLSNRTELFWYEQTVEDPFDWHYRWASFAGLILPGGWIDGMVA---ENQAHKHLNPHPGGAETSDNRTWQDEVSPGIRPE--MDSILRKWL 211
BLAST of mRNA_E-siliculosus-1a_F_contig1002.78.1 vs. uniprot
Match: D8LJE4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJE4_ECTSI) HSP 1 Score: 193 bits (491), Expect = 7.200e-54 Identity = 105/283 (37.10%), Postives = 152/283 (53.71%), Query Frame = 2 Query: 131 LGIGQCLPCQGLFGRLKEAPDGELQQSSQIELRGEPKSGTRFSWGWAHGLLEHTCEHLKHIYGDKTCRI-----------ERTRDETHLTNMT---LVFEP----GLAGSDGL----CSCEGISRVEVAASTRFKHSFPVPDSCRWKHDAGIAKVGEGCGSVNGRPVENASDLWLCMEEASCEYSDDSLQFAAMRDPRAVAVSTHFHVNSHTEENIGHPSLVKSLDEAVLLILPQICQFTTIRHILFDGQLSDRSKIFWYEDAMRDPLGWHYRWASFAGFTLP 913
L +C PC+ +FG+L A QQ +++LRGEPKSGT F + WA L TCE L +YG+ TC + ET L +M VF+P G + + G C C + +V + S+ FKH PVP SC W+H + +GC +VNGR V N +D C+++ C DD +Q +RDPRAVAVS+ FH+ +H H + +S+D VL +LP IC F +R+++ +L ++ F Y++++ DPL WH RW S G T P
Sbjct: 78 LQADECPPCETMFGKLNGA-----QQHVELQLRGEPKSGTSFMFEWAVNALMVTCEELGRLYGEGTCTFRWRGFFSRRKQKPVSPETALVDMKEVFFVFKPNRQHGRSSAGGPSASPCPCSTVDKVSIMVSSLFKHDLPVPPSCPWQHVDNVTPENKGCTTVNGRRVGNYTDTVECLQQHPCRIVDDRIQMLILRDPRAVAVSSFFHLKTHHHPFWKHLT-DESVDSFVLRMLPTICHFIHLRYLVLHEKLGGKTVEFTYDESLADPLQWHQRWLSSVGLTPP 354
BLAST of mRNA_E-siliculosus-1a_F_contig1002.78.1 vs. uniprot
Match: D7G2T4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2T4_ECTSI) HSP 1 Score: 177 bits (450), Expect = 4.980e-51 Identity = 97/172 (56.40%), Postives = 115/172 (66.86%), Query Frame = 2 Query: 644 MRDPRAVAVSTHFHVNSHTEENIGHPSLVKSLDEAVLLILPQICQFTTIRHILFDGQLSDRSKIFWYEDAMRDPLGWHYRWASFAGFTLPARWIEDIHATLPEW-QQDAHRDPHPSGQDKASTVRPTGGVVSCVNPWLSR--PRERLHPKSSPSIQPPTVFVRKYRAAMTRT 1150
MRDPRAVAVST+F++ + ++ HPS KSLDEAV++ILPQICQFTTIRHILFDGQLSDRS+IFWYEDAMRDPLGW+ RWAS AGFTLPARWI+DI A+L E + D R+PHP GQ VVS W P RL S P V + ++ + T
Sbjct: 1 MRDPRAVAVSTYFYIK-RSPIHLHHPSRGKSLDEAVVVILPQICQFTTIRHILFDGQLSDRSEIFWYEDAMRDPLGWYNRWASLAGFTLPARWIKDIQASLTEAAENDRKREPHPGGQ-----------VVSSDRTWEDEVSPETRLEMNSILRTWLPGVLLARFDVPASET 160
BLAST of mRNA_E-siliculosus-1a_F_contig1002.78.1 vs. uniprot
Match: D7FUF6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUF6_ECTSI) HSP 1 Score: 73.6 bits (179), Expect = 1.470e-12 Identity = 32/64 (50.00%), Postives = 42/64 (65.62%), Query Frame = 2 Query: 800 LFDGQLSDRSKIFWYEDAMRDPLGWHYRWASFAGFTLPARWIEDIHATLPEWQQDAHRDPHPSG 991
+F+G LSDRS++FWYE+ + DP WHYRWASFAG LP WI+ + A Q+ + HP G
Sbjct: 1 MFEGLLSDRSEMFWYEETLEDPFAWHYRWASFAGLILPRAWIDGMVAVN---QERLFFNRHPGG 61 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1002.78.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 5 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1002.78.1 >prot_E-siliculosus-1a_F_contig1002.78.1 ID=prot_E-siliculosus-1a_F_contig1002.78.1|Name=mRNA_E-siliculosus-1a_F_contig1002.78.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=393bp MLGRACVCLPLALLGAYAASGVELVSEYITRTRPPETLGIGQCLPCQGLFback to top mRNA from alignment at E-siliculosus-1a_F_contig1002:2434..6708+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1002.78.1 ID=mRNA_E-siliculosus-1a_F_contig1002.78.1|Name=mRNA_E-siliculosus-1a_F_contig1002.78.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4275bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1002:2434..6708+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1002:2434..6708+ >mRNA_E-siliculosus-1a_F_contig1002.78.1 ID=mRNA_E-siliculosus-1a_F_contig1002.78.1|Name=mRNA_E-siliculosus-1a_F_contig1002.78.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2358bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1002:2434..6708+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |