mRNA_E-siliculosus-1a_F_contig10002.68.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10002.68.1 vs. uniprot
Match: D8LG36_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG36_ECTSI) HSP 1 Score: 152 bits (385), Expect = 6.130e-47 Identity = 72/79 (91.14%), Postives = 74/79 (93.67%), Query Frame = 1 Query: 1 MSGLFRRNSSQPLFLCISCALLEPCSHFGKGRKQDTLGNRAITCSTVMPVDFYGRRLTPDDESDPLHVACSFEILQEDA 237
MS LFRRN+SQPLFLCISCALL CS FGKGRKQDTLGN AITCSTVMPVDFYGRRLTPDDESDPLHVACSFEIL+EDA
Sbjct: 1 MSSLFRRNASQPLFLCISCALLGSCSQFGKGRKQDTLGNHAITCSTVMPVDFYGRRLTPDDESDPLHVACSFEILKEDA 79
BLAST of mRNA_E-siliculosus-1a_F_contig10002.68.1 vs. uniprot
Match: A0A6H5LJP6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJP6_9PHAE) HSP 1 Score: 74.7 bits (182), Expect = 7.190e-14 Identity = 38/50 (76.00%), Postives = 38/50 (76.00%), Query Frame = 1 Query: 88 KGRKQDTLGNRAITCSTVMPVDFYGRRLTPDDESDPLHVACSFEILQEDA 237
K RKQDT NRAI CST MPVD YGRRLTP DESDPL VA E LQEDA
Sbjct: 586 KARKQDTPANRAIMCSTKMPVDVYGRRLTPVDESDPLLVARGLEALQEDA 635
BLAST of mRNA_E-siliculosus-1a_F_contig10002.68.1 vs. uniprot
Match: D7FI37_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI37_ECTSI) HSP 1 Score: 72.4 bits (176), Expect = 4.720e-13 Identity = 36/49 (73.47%), Postives = 38/49 (77.55%), Query Frame = 1 Query: 88 KGRKQDTLGNRAITCSTVMPVDFYGRRLTPDDESDPLHVACSFEILQED 234
K RKQDT GNRAI CST MPVD YGRRLTP DES+PL VA E LQ+D
Sbjct: 1298 KARKQDTPGNRAIMCSTKMPVDVYGRRLTPADESNPLLVARDLEALQKD 1346
BLAST of mRNA_E-siliculosus-1a_F_contig10002.68.1 vs. uniprot
Match: A0A6H5JHL7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHL7_9PHAE) HSP 1 Score: 72.0 bits (175), Expect = 6.320e-13 Identity = 35/49 (71.43%), Postives = 38/49 (77.55%), Query Frame = 1 Query: 88 KGRKQDTLGNRAITCSTVMPVDFYGRRLTPDDESDPLHVACSFEILQED 234
K R+QDT NRAI CST PV+ YGRRLTPDDESDPL +A S E LQED
Sbjct: 351 KAREQDTPENRAIMCSTKRPVEGYGRRLTPDDESDPLRIARSLETLQED 399
BLAST of mRNA_E-siliculosus-1a_F_contig10002.68.1 vs. uniprot
Match: D7FI63_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI63_ECTSI) HSP 1 Score: 69.7 bits (169), Expect = 4.170e-12 Identity = 35/50 (70.00%), Postives = 37/50 (74.00%), Query Frame = 1 Query: 88 KGRKQDTLGNRAITCSTVMPVDFYGRRLTPDDESDPLHVACSFEILQEDA 237
K RKQDT NR+I CST PV+ YGRRLT DDESDPL V S E LQEDA
Sbjct: 929 KARKQDTPENRSIMCSTKRPVEGYGRRLTADDESDPLRVGRSLETLQEDA 978
BLAST of mRNA_E-siliculosus-1a_F_contig10002.68.1 vs. uniprot
Match: D7FI39_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI39_ECTSI) HSP 1 Score: 59.7 bits (143), Expect = 1.400e-8 Identity = 29/41 (70.73%), Postives = 31/41 (75.61%), Query Frame = 1 Query: 97 KQDTLGNRAITCSTVMPVDFYGRRLTPDDESDPLHVACSFE 219
KQD+ NRAI CSTVMPVD YGRRL+ DESDPL VA E
Sbjct: 1165 KQDSPDNRAIMCSTVMPVDVYGRRLSASDESDPLRVAKMIE 1205
BLAST of mRNA_E-siliculosus-1a_F_contig10002.68.1 vs. uniprot
Match: A0A6H5L4M7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4M7_9PHAE) HSP 1 Score: 57.0 bits (136), Expect = 1.230e-7 Identity = 27/41 (65.85%), Postives = 30/41 (73.17%), Query Frame = 1 Query: 97 KQDTLGNRAITCSTVMPVDFYGRRLTPDDESDPLHVACSFE 219
KQD+ NRAI CST+MPVD YGRRL+ DE DPL VA E
Sbjct: 476 KQDSPDNRAIMCSTMMPVDVYGRRLSASDEGDPLRVAKMIE 516 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10002.68.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 7 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10002.68.1 >prot_E-siliculosus-1a_F_contig10002.68.1 ID=prot_E-siliculosus-1a_F_contig10002.68.1|Name=mRNA_E-siliculosus-1a_F_contig10002.68.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=79bp MSGLFRRNSSQPLFLCISCALLEPCSHFGKGRKQDTLGNRAITCSTVMPVback to top mRNA from alignment at E-siliculosus-1a_F_contig10002:110..708- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig10002.68.1 ID=mRNA_E-siliculosus-1a_F_contig10002.68.1|Name=mRNA_E-siliculosus-1a_F_contig10002.68.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=599bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10002:110..708- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10002:110..708- >mRNA_E-siliculosus-1a_F_contig10002.68.1 ID=mRNA_E-siliculosus-1a_F_contig10002.68.1|Name=mRNA_E-siliculosus-1a_F_contig10002.68.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=474bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10002:110..708- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |